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Conserved domains on  [gi|15598805|ref|NP_252299|]
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polyamine ABC transporter permease PotC [Pseudomonas aeruginosa PAO1]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 1-256 1.83e-86

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 257.73  E-value: 1.83e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   1 MRRPYLLWSATALVYLFLYVPLVIVVLYSFNDSRLNA-EWVGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGT 79
Cdd:COG1177   3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  80 LAGVALHRFKLR---VLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLT 156
Cdd:COG1177  83 PAALALARYRFRgrrLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 157 EAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYTMIKIAVTPEVNAVSTLLML 236
Cdd:COG1177 163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLIL 242

                       250       260
                ....*....|....*....|
gi 15598805 237 LTLVLIVIASKLSPSAIKGH 256
Cdd:COG1177 243 LSLLLLLLAERLRRRGERRR 262
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 1-256 1.83e-86

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 257.73  E-value: 1.83e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   1 MRRPYLLWSATALVYLFLYVPLVIVVLYSFNDSRLNA-EWVGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGT 79
Cdd:COG1177   3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  80 LAGVALHRFKLR---VLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLT 156
Cdd:COG1177  83 PAALALARYRFRgrrLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 157 EAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYTMIKIAVTPEVNAVSTLLML 236
Cdd:COG1177 163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLIL 242

                       250       260
                ....*....|....*....|
gi 15598805 237 LTLVLIVIASKLSPSAIKGH 256
Cdd:COG1177 243 LSLLLLLLAERLRRRGERRR 262
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 13-248 2.52e-77

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 234.49  E-value: 2.52e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   13 LVYLFLYVPLVIVVLYSFNDSRLNAEWVGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGTLAGVALHRFKLR- 91
Cdd:PRK09500  12 LVYAYLYIPIIILIVNSFNSSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRg 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   92 --VLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQS 169
Cdd:PRK09500  92 kkFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTI 171

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598805  170 FHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYTMIKIAVTPEVNAVSTLLMLLTLVLIVIASKL 248
Cdd:PRK09500 172 LRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLL 250
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 12-216 2.62e-16

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 77.80  E-value: 2.62e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    12 ALVYLFLYVPLVIVVLYSFNDSrlNAEWVGFTLdwYRKLFGNRDMLQAAANSLVIALVSASVATLLGTLAGVALHRFKL- 90
Cdd:TIGR03262  12 LALLLFLLLPLLALLTKSVYDS--DGDFIGLAN--FAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIp 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    91 --RVLPLLVLTPIAIPELLMGVSLVIFF---------IGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLTEAA 159
Cdd:TIGR03262  88 gkGAFRLVALLPLLAPSLLPAISLIYLFgnqgllkglLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAA 167

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15598805   160 RDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITfFTAGGGFATLPTQIY 216
Cdd:TIGR03262 168 RAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVP-KVIGGDYNVLATDIY 223
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 60-218 6.88e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 65.38  E-value: 6.88e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  60 AANSLVIALVSASVATLLGTLAGVALHRFKLRVLPLL---VLTPIAIPELLMGVSLVIFF-----IGLNMSLGMLSVTLA 131
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLrriIDLLLSLPSLVLGLLLVLLFgvllgWGILPGLGLPALILA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 132 HItFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATL 211
Cdd:cd06261  81 LL-LIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159


                ....*..
gi 15598805 212 PTQIYTM 218
Cdd:cd06261 160 GTGLLLI 166
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 74-216 9.12e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 56.54  E-value: 9.12e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    74 ATLLGTLAGVALHRFKLRVLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDE 153
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598805   154 SLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVIT-FFTAGGGFATLPTQIY 216
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLeFLGSWPGLGLLLIEAI 144
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 1-256 1.83e-86

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 257.73  E-value: 1.83e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   1 MRRPYLLWSATALVYLFLYVPLVIVVLYSFNDSRLNA-EWVGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGT 79
Cdd:COG1177   3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  80 LAGVALHRFKLR---VLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLT 156
Cdd:COG1177  83 PAALALARYRFRgrrLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 157 EAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYTMIKIAVTPEVNAVSTLLML 236
Cdd:COG1177 163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLIL 242

                       250       260
                ....*....|....*....|
gi 15598805 237 LTLVLIVIASKLSPSAIKGH 256
Cdd:COG1177 243 LSLLLLLLAERLRRRGERRR 262
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 13-248 2.52e-77

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 234.49  E-value: 2.52e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   13 LVYLFLYVPLVIVVLYSFNDSRLNAEWVGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGTLAGVALHRFKLR- 91
Cdd:PRK09500  12 LVYAYLYIPIIILIVNSFNSSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRg 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   92 --VLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQS 169
Cdd:PRK09500  92 kkFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTI 171

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598805  170 FHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYTMIKIAVTPEVNAVSTLLMLLTLVLIVIASKL 248
Cdd:PRK09500 172 LRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLL 250
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 12-231 2.72e-53

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 173.88  E-value: 2.72e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   12 ALVYLFLYVPLVIVVLYSFNDSRLNAEWVGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGTLAGVALHRF-KL 90
Cdd:PRK10592  17 VLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFgRF 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   91 RV---LPLLVLTPIAIPELLMGVSLVIFFIGLNMSLG------MLSVTLAHITFSVGFVALVVQARMSGMDESLTEAARD 161
Cdd:PRK10592  97 RGsngFAFMITAPLVMPDVITGLSLLLLFVALAHAIGwpadrgMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMD 176

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  162 LGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYTMIKIAVTPEVNAVS 231
Cdd:PRK10592 177 LGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALA 246
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-249 2.06e-31

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 121.04  E-value: 2.06e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   2 RRPYLLWSATALVYLFLYVPLVIVVLYSFNDSRLNaewvGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGTLA 81
Cdd:COG1178 286 WRWLALALCLLLVLLGLLLPLLALLLWSLTKALDD----NLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLL 361

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  82 GVALHRFKLR---VLPLLVLTPIAIPELLMGVSLVIFF---IGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESL 155
Cdd:COG1178 362 AYLVRRRRGRlarLLDRLAMLPYAVPGIVLGLGLLLLFnrpLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSL 441

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 156 TEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYTMIKIAVTPEVNAVSTLLM 235
Cdd:COG1178 442 EEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLV 521

                       250
                ....*....|....
gi 15598805 236 LLTLVLIVIASKLS 249
Cdd:COG1178 522 LVSLLPVLLLERLL 535
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 2-219 2.21e-29

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 111.78  E-value: 2.21e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   2 RRPYLLWSATALVYLFLYVPLVIVVLYSFNDSRLNAEWV-GFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGTL 80
Cdd:COG1176  10 RPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVpGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYP 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  81 AGVALHRFKLR---VLPLLVLTPIAIPELLMGVSLVIFF------------IGL-----NMSLGMLSVTLAHITFSVGFV 140
Cdd:COG1176  90 IAYFLARAPPRwrnLLLLLVILPFWTSFLVRTYAWIVLLgrngllnslllaLGLideplRLLYTEFAVVIGLVYVYLPFM 169

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598805 141 ALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYTMI 219
Cdd:COG1176 170 VLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQF 248
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-219 3.33e-27

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 109.48  E-value: 3.33e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   2 RRPYLLWSATALVY-LFLYVPLVIVVLYSFNDSrlnaewvgftLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGTL 80
Cdd:COG1178   7 RRPRLLLLLLALLLaLLVLLPLLALLLRAFTDG----------LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVP 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  81 AGVALHRFKL---RVLPLLVLTPIAIPELLMGVSLVIFF---------------IGLNMSLGMLSVTLAHITFSVGFVAL 142
Cdd:COG1178  77 LAWLLARTDFpgrRLLRWLLLLPLALPPYVVALAWIALFgpngllntllralfgLEPPDIYGLGGIILVLVLFNYPYVYL 156

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598805 143 VVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDF--VITFftaGGGFATLPTQIYTMI 219
Cdd:COG1178 157 LLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFgtPLVL---GGGYTTLTTAIYQAW 232
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 7-217 2.00e-25

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 100.98  E-value: 2.00e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   7 LWSATALVYLFLYV--PLVIVVLYSFndsrlnaewvGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGTLAGVA 84
Cdd:COG0555  11 LTLGLTLLYLSLIVllPLAALVLKAA----------GLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWV 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  85 LHRFKL---RVLPLLVLTPIAIPELLMGVSLVIFF------------IGLNMSLGMLSVTLAHITFSVGFVALVVQARMS 149
Cdd:COG0555  81 LVRYRFpgkRLVDALVDLPFALPTAVAGIALLLLFgpngwlgqllapLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLE 160

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598805 150 GMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAG---GGFATLPTQIYT 217
Cdd:COG0555 161 ELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGnlpMKTEILPLLIYL 231
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-216 7.98e-22

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 91.73  E-value: 7.98e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   2 RRPYLLWSATALVYL-FLYVPLVIVVLYSFNDSRL---NAEWVGFtlDWYRKLFGNRDMLQAAANSLVIALVSASVATLL 77
Cdd:COG1175  18 LAAYLFLLPALLLLLvFVLYPLLYTLYLSFTDWNLlgpPPEFVGL--DNYARLFTDPRFWNALGNTLLFTVVSVPLQLVL 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  78 GTLAGVALHR-FKLR-VLPLLVLTPIAIPELLMGVSLVIFF-------------IGL-------NMSLGMLSVTLAHITF 135
Cdd:COG1175  96 GLLLALLLNRkLRGRgFFRTLFFLPWVISPVVVALIWKWLFnpdygllnallgaLGLepinwlgDPSLALPAVIIVTVWK 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 136 SVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFA----TL 211
Cdd:COG1175 176 GTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGnsttTL 255


                ....*
gi 15598805 212 PTQIY 216
Cdd:COG1175 256 VLYIY 260
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 5-219 1.31e-21

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 90.93  E-value: 1.31e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   5 YLLWSATALVYLFlyvPLVIVVLYSFNDS----RLNAEWV--GFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLG 78
Cdd:COG0395  18 YLLLILLALLFLF---PLYWMVVTSFKPPaeifSGPPSLLpsEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLS 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  79 TLAGVALHRFKLR---VLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESL 155
Cdd:COG0395  95 SLAAYALARFRFRgrkLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPREL 174

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15598805 156 TEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITF-FTAGGGFATLPTQIYTMI 219
Cdd:COG0395 175 EEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLiLLTSPDLRTLPVGLASFQ 239
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 2-219 5.93e-19

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 83.66  E-value: 5.93e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   2 RRPYLLWSATALVYLFLYV--PLVIVVLYSFNDSR----LNAEWVGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVAT 75
Cdd:COG3833  11 RRLKLGLRHLVLIILAIIAlfPILWVVSASFNPGGslysSSLIPENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISV 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  76 LLGTLAGVALHRFKLR-----VLPLLVLTpiAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSG 150
Cdd:COG3833  91 FLAALAAYAFSRFRFKgrkagLLALLLLQ--MFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWLMKGYFDT 168

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598805 151 MDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVI--TFFTAGGGFaTLPTQIYTMI 219
Cdd:COG3833 169 IPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILasVLLRSPENY-TLAVGLYSFV 238
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 55-217 9.83e-17

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 76.63  E-value: 9.83e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  55 DMLQAAANSLVIALVSASVATLLGTLAGVALHRFKLRVLPL---LVLTPIAIPELLMGVSLVIFFiGLNMSLGMLSVTLA 131
Cdd:COG4149   4 EDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLleaLVTLPLVLPPTVLGFYLLLLF-GRNGPLGQLLEELF 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 132 HITFSVGFVALVV--------------QARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDF 197
Cdd:COG4149  83 GISLVFTWTGAVLasvvvslplmvqplRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEF 162

                       170       180
                ....*....|....*....|....*.
gi 15598805 198 --VITFftaGGGFA----TLPTQIYT 217
Cdd:COG4149 163 gaTLMF---AGNIPgktqTLPLAIYD 185
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 2-217 1.62e-16

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 76.97  E-value: 1.62e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    2 RRPYLLWSATALVYL---FLYvPLVIVVLYSFNDSRlnaewvGFTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLG 78
Cdd:PRK15050  21 RLRPLLWLLLPLLVLaplVVY-PLVRVVLQSLTGEH------GLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLG 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   79 TLAGVALHrFK----LRVLPLLVLTPIAIPELLMGVSLvIFFIG-------------------LNMSLGMLSVTLAHITF 135
Cdd:PRK15050  94 VLLALVLA-FVpfpgASLVGRFIDTFVAFPSFLITLAF-TFLYGsagsvnialqrlfgleappLDFLYSPGGVILAEITF 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  136 SVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQI 215
Cdd:PRK15050 172 YTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLI 251


                 ..
gi 15598805  216 YT 217
Cdd:PRK15050 252 YS 253
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 12-216 2.62e-16

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 77.80  E-value: 2.62e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    12 ALVYLFLYVPLVIVVLYSFNDSrlNAEWVGFTLdwYRKLFGNRDMLQAAANSLVIALVSASVATLLGTLAGVALHRFKL- 90
Cdd:TIGR03262  12 LALLLFLLLPLLALLTKSVYDS--DGDFIGLAN--FAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIp 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    91 --RVLPLLVLTPIAIPELLMGVSLVIFF---------IGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLTEAA 159
Cdd:TIGR03262  88 gkGAFRLVALLPLLAPSLLPAISLIYLFgnqgllkglLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAA 167

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15598805   160 RDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITfFTAGGGFATLPTQIY 216
Cdd:TIGR03262 168 RAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVP-KVIGGDYNVLATDIY 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 63-216 1.10e-14

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 70.74  E-value: 1.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    63 SLVIALVSASVATLLGTLAGVALHRFKLRVLPL---LVLTPIAIPELLMGVSLVIFF-----IGLNMSLGMLS------- 127
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLlevLVTLPLVLPPTVLGFYLLIAFgpngpIGKLLELFGISlvftftg 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   128 VTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAG-- 205
Cdd:TIGR02141  83 AVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGni 162

                         170
                  ....*....|..
gi 15598805   206 -GGFATLPTQIY 216
Cdd:TIGR02141 163 pGETQTIPLAIY 174
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 10-216 2.71e-14

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 70.46  E-value: 2.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    10 ATALVYLF--LYVPLVIVVLYSFNDSrlnaewvgftLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGTLAGVALHR 87
Cdd:TIGR00969  20 GIALLYVFliLILPVAALFVQAFSKG----------LGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    88 FKLR---VLPLLVLTPIAIPELLMGVSLVIFF------------IGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMD 152
Cdd:TIGR00969  90 YQFPgrkLLDALIDLPFALSPVVAGLTLALLYgsngwlgswlasFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELG 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598805   153 ESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAG---GGFATLPTQIY 216
Cdd:TIGR00969 170 TEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGnipGKTLTLPLLIE 236
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 54-219 8.60e-14

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 68.58  E-value: 8.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    54 RDMLQAAANSLVIALVSASVATLLGTLAGVALHRFKL---RVLPLLVLTPIAIPELLMGVSLVIFF------------IG 118
Cdd:TIGR01581  17 PENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFplkKLLDTLLDLPMVLPPLVAGLALLLLFgrngllgpyleaAG 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   119 LNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFV 198
Cdd:TIGR01581  97 IQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFG 176

                         170       180
                  ....*....|....*....|....
gi 15598805   199 ITFFTAGGGFA---TLPTQIYTMI 219
Cdd:TIGR01581 177 ATLMFAGSIQGktrTLPLAIYLNI 200
modB PRK09421
molybdate ABC transporter permease subunit;
57-219 1.72e-13

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 67.64  E-value: 1.72e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   57 LQAAANSLVIALVSASVATLLGTLAGVALHRFKLR---VLPLLVLTPIAIPELLMGVSLVIFFiGLNMSLGMLSVTLAHI 133
Cdd:PRK09421   8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPgksLLDSLLHLPLVLPPVVTGYLLLISM-GRRGFIGQWLYEWFGI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  134 TFS------------VGFVALVVQARMS--GMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDF-- 197
Cdd:PRK09421  87 SFAfswrgaalaaavMAFPLMVRAIRLSleAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFga 166

                        170       180
                 ....*....|....*....|...
gi 15598805  198 VITFFT-AGGGFATLPTQIYTMI 219
Cdd:PRK09421 167 TITFVSnIPGETQTIPSAMYTLI 189
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 8-214 4.85e-13

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 68.36  E-value: 4.85e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   8 WSATALVYLFLYVPLVIVVLYSFNDS-RLNAEW-VGFTLD-WYRKLFGnrdMLQAAANSLVIALVSASVATLLGTLAGVA 84
Cdd:COG4135 306 LALMLLIALLSLLGLALLLLWSFAGRwRFPDALpSSWTLRfWQRAAPG---LLEPLGNTLLLALASALIALVLVLACLEA 382

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  85 LHRFKLRVLPLLvLTPIAIPELLMGVS----LVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLTEAAR 160
Cdd:COG4135 383 EARRGRRPGRRA-LWLLYLPLLVPQIAflfgLQVLLLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAA 461

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 15598805 161 DLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQ 214
Cdd:COG4135 462 SLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLLIGAGRVATLTTE 515
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 60-218 6.88e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 65.38  E-value: 6.88e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  60 AANSLVIALVSASVATLLGTLAGVALHRFKLRVLPLL---VLTPIAIPELLMGVSLVIFF-----IGLNMSLGMLSVTLA 131
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLrriIDLLLSLPSLVLGLLLVLLFgvllgWGILPGLGLPALILA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 132 HItFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATL 211
Cdd:cd06261  81 LL-LIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159


                ....*..
gi 15598805 212 PTQIYTM 218
Cdd:cd06261 160 GTGLLLI 166
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 2-219 2.41e-12

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 65.21  E-value: 2.41e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   2 RRPYLLWSA--TALVYLFLYVPLVIVVLYSFNDsrlnaEWVGFTLDWYRKLFgNRDMLQAAANSLVIALVSASVATLLGT 79
Cdd:COG4132  11 KWLAWLGLLpfFLFVLLFLLLPTVWVVIGAFQD-----DDGGFTLANYAELT-SPFYLQAFWNSIWLSLASALIGAVIGL 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  80 LAGVALHRFKLRVLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSV---------------------TLAHITFSVG 138
Cdd:COG4132  85 LLAYALRRGGPGWLRRAVLAFSGVASNFAGVPLAFAFIATLGRNGLVTLllkqlgidlydgfnlysfwglILVYLYFQIP 164

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 139 FVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYTM 218
Cdd:COG4132 165 LMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYATAYALTGGNYNLVPIRIGAL 244


                .
gi 15598805 219 I 219
Cdd:COG4132 245 I 245
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
66-205 2.44e-10

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 59.38  E-value: 2.44e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   66 IALVSASVATLLGTLAGVAL------HRFKLR-VLPLLVLTPIAIPELLMGVSLVIFF------------IGLNMSLGML 126
Cdd:PRK10971  62 VTLLSAFVASIFNAVFGLLMawiltrYRFPGRtLLDALMDLPFALPTAVAGLTLASLFsvngwygewlakFDIKVTYTWL 141

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598805  127 SVTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAG 205
Cdd:PRK10971 142 GIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAG 220
cysT CHL00187
sulfate transport protein; Provisional
 57-197 4.09e-10

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 58.10  E-value: 4.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   57 LQAAANSLVIALVSASVATLLGTLAGVALHRFKL---RVLPLLVLTPIAIPELLMGVSLVIFF------------IGLNM 121
Cdd:CHL00187  54 LSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFpgkRLLDAAVDLPFALPTSVAGLTLATVYgdngwighllshLGIQI 133

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15598805  122 SLGMLSVTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDF 197
Cdd:CHL00187 134 VFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 74-216 9.12e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 56.54  E-value: 9.12e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    74 ATLLGTLAGVALHRFKLRVLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDE 153
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598805   154 SLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVIT-FFTAGGGFATLPTQIY 216
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLeFLGSWPGLGLLLIEAI 144
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 16-190 8.46e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 52.00  E-value: 8.46e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   16 LFLYVPLVIVVLYSF--NDSRLNAEWVgFTLDWYRKLFgNRDMLQAAANSLVIALVSASVATLLGTLAGVALHRFKLRVL 93
Cdd:PRK09497  21 LFVFLPNLMIIGTSFltRDDANFVKMV-FTLDNYTRLL-DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVR 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   94 PL---LVLTPIAIPELLMGVSLVIFFIG---LN---MSLGMLS-----------VTLAHITFSVGFVALVVQARMSGMDE 153
Cdd:PRK09497  99 PLllfLLIVPFWTNSLIRIYGLKIFLSTkgyLNeflLWLGVIDtpirimftesaVIIGLVYILLPFMVLPLYSSIEKLDK 178

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 15598805  154 SLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAF 190
Cdd:PRK09497 179 PLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVL 215
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 50-194 7.64e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 48.99  E-value: 7.64e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  50 LFGNRDMLQAAANSLVIALVSASVATLLGTLAGVALHRFK------------LRVLPLLVLTPIAI--------PELLMG 109
Cdd:COG0600  53 LLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRllrrlldpllvfLRPIPPLALAPLLIlwfgigeaSKIFVI 132

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 110 VSLVIFFIGLNMSLGMLSVtlahitfsvgfvalvvqarmsgmDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMA 189
Cdd:COG0600 133 FLGAFFPILLNTAAGVRSV-----------------------DPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIA 189


                ....*
gi 15598805 190 FTLSI 194
Cdd:COG0600 190 LGLAW 194
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 139-199 4.66e-06

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 47.01  E-value: 4.66e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598805  139 FVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVI 199
Cdd:PRK10683 198 FMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVI 258
malG PRK10998
maltose ABC transporter permease MalG;
62-194 5.23e-06

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 46.63  E-value: 5.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   62 NSLVIALVSASVATLLGTLAGVALHRFKLRVLPLL------------VLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVT 129
Cdd:PRK10998  87 NSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLlkgmlifqmfpaVLSLVALYALFDRLGQYIPFIGLNTHGGVIFAY 166

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15598805  130 LAHITFSVgfvaLVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSI 194
Cdd:PRK10998 167 LGGIALHV----WTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAI 227
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 12-216 6.34e-06

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 46.75  E-value: 6.34e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   12 ALVYLFLYVPLVIVVLysfndSRLNAEWVgftldwyrKLFGNRDMLQAAANSLVIALVSASVATLLGTL-----AGVALH 86
Cdd:PRK09433 286 VLALLLLLPPLLAVVV-----SGLNASLL--------RVLAQPALWQALWTSLRIALAAALLAVVLTMMllwssRELRLR 352

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   87 RFKL--RVLPLLVLTPIAIPELLMGVSLVIFF--IGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLTEAARDL 162
Cdd:PRK09433 353 QRKLaaQALELSGMLILAMPGIVLATGLFLLLrnTTDLPASALGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQSL 432

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15598805  163 GATPWQSFHLVTLP-LIMPGIVAGALmAFTLSIDDF-VITFFtAGGGFATLPTQIY 216
Cdd:PRK09433 433 GIRGWSRLRLIELRaLRRPLAQAFAF-ACALSLGDFgVIALF-GSQDFRTLPFLLY 486
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 43-211 1.60e-05

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 44.66  E-value: 1.60e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  43 TLDWYRKLFGNRD-MLQAAANSLVIALVSASVATLLGTLAGVALHRFKLRVLPLLVLTPI--AIPELlmgvSLVIFFIGL 119
Cdd:COG1174   2 NLSLIEWLADNRDgILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANIlqTIPSL----ALLALLIPL 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 120 nMSLGMLSVTLAHITFSVgfvALVVQARMSGM---DESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDD 196
Cdd:COG1174  78 -LGIGPAPAIIALVLYAL---LPILRNTYTGLrsvDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGT 153

                       170
                ....*....|....*
gi 15598805 197 FVITFFTAGGGFATL 211
Cdd:COG1174 154 ATLAALIGAGGLGDL 168
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 62-219 2.31e-05

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 44.64  E-value: 2.31e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  62 NSLVIALVSASVATLLGTLAGVALHRF----KL-RVLPLLVLTPIAIPELLMGV---SLVIFFIGLNMSLGMLSVTLAHI 133
Cdd:COG0581  45 GTLLLVLLATLIAVPLGVLAAIYLAEYarggRLaRLIRFAIDVLAGVPSIVYGLfgyALFVLTLGLGFSLLAGALALALL 124

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805 134 TFSVgfVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAG-------- 205
Cdd:COG0581 125 MLPV--VIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGvspflpls 202

                       170
                ....*....|....*.
gi 15598805 206 --GGFATLPTQIYTMI 219
Cdd:COG0581 203 lfDPFATLPVHIYNLA 218
PRK15111 PRK15111
peptide ABC transporter permease SapC;
63-196 4.96e-05

peptide ABC transporter permease SapC;


Pssm-ID: 185066 [Multi-domain]  Cd Length: 296  Bit Score: 43.54  E-value: 4.96e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   63 SLVIALVSASVATLLGTLAGVAlHRFKLRVLPLLVLTPIAIPELLMGVsLVIFFIGLNMSLGMLSVTLAHITfsvGFVAL 142
Cdd:PRK15111 102 AFVVTLAATLCGLVLGVFAGAT-HGLRSAVLNHILDTLLSIPSLLLAI-IVVAFAGPSLSHAMFAVWLALLP---RMVRS 176

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15598805  143 VVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDD 196
Cdd:PRK15111 177 IYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILD 230
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
48-193 1.15e-04

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 42.50  E-value: 1.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   48 RKLFGNRdmlQAAANSLVIALVSASVATLLGTLAGVALHRFKLRVLPLLVLTpIAIPELLMGVSLVIFfIGLNMSLGMLS 127
Cdd:PRK09881  88 RVLVGSQ---QSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIM-LSIPSLVLTMALAAA-LGPSLFNAMLA 162

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598805  128 VTLAHITFsvgFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGA--------LMAFTLS 193
Cdd:PRK09881 163 IAIVRIPF---YVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQAsldigsaiLMAATLG 233
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 56-183 2.58e-04

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 41.21  E-value: 2.58e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  56 MLQAAANSLVIALVSASVATLLGTLAGVAlhrfklRVLPLLVLTPIAIP--ELLMGVSL--VIFFI-------GLNMSlG 124
Cdd:COG0765  15 LLEGLLVTLLLTVLAIVLGLVLGLLLALA------RLSPNPVLRWLATAyvEFFRGTPLlvQLFFIyfglpllGIDLS-P 87

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15598805 125 MLSVTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLP----LIMPGIV 183
Cdd:COG0765  88 FVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPqalrIILPPLG 150
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 42-183 5.87e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 40.82  E-value: 5.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    42 FTLDWYRKLFGNRDMLQAAANSLVIALVSASVATLLGTLAGVALHRFKLR-----VLPLLVLTPIAIPELLMGVSLVIFF 116
Cdd:TIGR03262 316 LTLKHYNFDLMDGGGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFgllrgVLRFLAILPMAVPGLVLGLGYIFFF 395

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598805   117 IGLNMSLGMLSVTLAHIT-------FSVGFVALVVQARMsgMDESLTEAARDLGATPWQSFHLVTLPLIMPGIV 183
Cdd:TIGR03262 396 NAPTNPLNGLYGTMALLVlctvvhfYTVSHLTAVTALKQ--IDSEFEAVSASLKVPFYKTFLRVTLPVCLPAIL 467
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
153-207 2.65e-03

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 38.53  E-value: 2.65e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15598805  153 ESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGG 207
Cdd:PRK10952 236 ADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGG 290
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 16-216 3.00e-03

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 37.99  E-value: 3.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    16 LFLYVPLVIVVLYSFNDSRLNAEWVGFTLDWyRKLFGNRDMLQAAANSLVIALVSASVATLLGTLAGVALHRFK-----L 90
Cdd:TIGR00974  13 LLALLPLIWILWYILIKGLPALNLEFFTKSP-TPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIYLAEYAngsrfT 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    91 RVLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLG--MLSVTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQ 168
Cdd:TIGR00974  92 KIIRFAVDILAGVPSIVVGLFGYGFFVLTYLGGGfsLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQ 171

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15598805   169 SFHLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGG----------GFATLPTQIY 216
Cdd:TIGR00974 172 TIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGsaftppnlfdPFATLPVLIY 229
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 95-217 5.94e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 37.25  E-value: 5.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805    95 LLVLTPiAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVT 174
Cdd:TIGR02138 122 LFVLVP-FLKPHFQPFLGSNLGLIPLFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVI 200

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 15598805   175 LPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIYT 217
Cdd:TIGR02138 201 LPAARSGIVGAVVLGLGRALGETMAVTMVIGNVFPISPLSLFD 243
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
53-215 5.96e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 37.42  E-value: 5.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805   53 NRDMLQAAANSLVIALVSASVATLLGTLAGVALHRFKLR---VLPLLVLTPIAIPELLMGVsLVIFFIGLNMSLG----- 124
Cdd:PRK11602  59 DPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPgrqLLLTLLDIPFAVSPVVAGL-VYLLFYGSNGPLGgwlde 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  125 -----MLS---VTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAFTLSIDD 196
Cdd:PRK11602 138 hnlqlMFSwpgMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGE 217

                        170       180
                 ....*....|....*....|..
gi 15598805  197 FVITFFTAG---GGFATLPTQI 215
Cdd:PRK11602 218 FGAVSVVSGsirGETLSLPLQI 239
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 55-185 7.55e-03

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 36.57  E-value: 7.55e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598805  55 DMLQAAANSLVIALVSASVATLLGTLAGVALHRFK--------------------LRVLPLLVLTPIAIP--ELLMGVSl 112
Cdd:COG2011  11 LLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRpggllpnpvlyrvlgvivniFRSIPFIILLVALIPltRLIVGTS- 89

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15598805 113 viffIGLNMSLGMLSVtlahitFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAG 185
Cdd:COG2011  90 ----IGTTAAIVPLTI------AAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILG 152
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 139-190 9.28e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 36.61  E-value: 9.28e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 15598805 139 FVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAGALMAF 190
Cdd:COG0573 170 TITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGL 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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