|
Name |
Accession |
Description |
Interval |
E-value |
| recA |
PRK09354 |
recombinase A; Provisional |
1-346 |
0e+00 |
|
recombinase A; Provisional
Pssm-ID: 236476 [Multi-domain] Cd Length: 349 Bit Score: 687.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 1 MDENKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 80
Cdd:PRK09354 3 MDEEKQKALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 81 EAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD 160
Cdd:PRK09354 83 EAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 161 AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE 240
Cdd:PRK09354 163 SHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNR 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 241 TRVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGKANAAKYLEDNPEIGSVLEK 320
Cdd:PRK09354 243 TKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPELADEIEK 322
|
330 340
....*....|....*....|....*.
gi 15598813 321 TIRDQLLAKSGPVKADAEEVADAEAD 346
Cdd:PRK09354 323 KIREKLGLSAAAAEEEEEEDEEEEEE 348
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
1-346 |
0e+00 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 666.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 1 MDENKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 80
Cdd:COG0468 6 ASSEKEKALEAALSQIEKQFGKGSIMRLGDKARQDVEVISTGSLALDIALGVGGLPRGRIVEIYGPESSGKTTLALHAIA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 81 EAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD 160
Cdd:COG0468 86 EAQKAGGIAAFIDAEHALDPEYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDLIVVDSVAALVPKAEIEGEMGD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 161 AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE 240
Cdd:COG0468 166 SHVGLQARLMSQALRKLTGAISKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNR 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 241 TRVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGKANAAKYLEDNPEIGSVLEK 320
Cdd:COG0468 246 TRVKVVKNKVAPPFKEAEFDIMYGEGISKEGELLDLAVELGIIEKSGAWYSYGGERLGQGRENAKQFLKENPELAEEIEA 325
|
330 340
....*....|....*....|....*.
gi 15598813 321 TIRDQLLAKSGPVKADAEEVADAEAD 346
Cdd:COG0468 326 KIREKLGLGAVSEAAAAEEEEDEEEE 351
|
|
| tigrfam_recA |
TIGR02012 |
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization ... |
4-324 |
0e+00 |
|
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 162659 [Multi-domain] Cd Length: 321 Bit Score: 586.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 4 NKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQ 83
Cdd:TIGR02012 1 DKQKALEAALAQIEKQFGKGSIMRLGEKTVMDVETISTGSLALDLALGVGGLPKGRIIEIYGPESSGKTTLALHAIAEAQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 84 KQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHV 163
Cdd:TIGR02012 81 KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 164 GLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRV 243
Cdd:TIGR02012 161 GLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTVKQGEEVVGNRTKV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 244 KVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGKANAAKYLEDNPEIGSVLEKTIR 323
Cdd:TIGR02012 241 KVVKNKVAPPFREAEFDILYGEGISKLGEIIDLAVELDIIKKSGSWYSYGDEKLGQGRENAKAFLKENPELAQEIEKKVR 320
|
.
gi 15598813 324 D 324
Cdd:TIGR02012 321 E 321
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
7-267 |
0e+00 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 514.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 7 RALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQG 86
Cdd:pfam00154 1 KALEAALKQIEKQFGKGSIMKLGDEKKLDVETISTGSLALDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 87 ATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQ 166
Cdd:pfam00154 81 GTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAIDLIVVDSVAALVPKAEIEGEMGDSHVGLQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 167 ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVV 246
Cdd:pfam00154 161 ARLMSQALRKLTGSISKSNTTVIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQIKQGEEVIGNKTKVKVV 240
|
250 260
....*....|....*....|.
gi 15598813 247 KNKVSPPFRQAEFQILYGKGI 267
Cdd:pfam00154 241 KNKVAPPFKEAEFDIMYGEGI 261
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
36-269 |
1.05e-168 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 468.96 E-value: 1.05e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 36 IPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLV 115
Cdd:cd00983 2 VEVIPTGSLSLDIALGIGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKLGGTAAFIDAEHALDPEYAKKLGVDIDNLLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 116 SQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIR 195
Cdd:cd00983 82 SQPDTGEQALEIADTLIRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSLSKSKTTVIFINQLR 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598813 196 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFRQAEFQILYGKGIYR 269
Cdd:cd00983 162 EKIGVMFGNPETTTGGNALKFYASVRLDIRRIELIKEGEDVIGNRTKVKVVKNKVAPPFKQAEFDILYGEGISR 235
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
4-249 |
1.09e-121 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 368.65 E-value: 1.09e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 4 NKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQ 83
Cdd:PRK09519 6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 84 KQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHV 163
Cdd:PRK09519 86 AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 164 GLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRV 243
Cdd:PRK09519 166 GLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRV 245
|
....*.
gi 15598813 244 KVVKNK 249
Cdd:PRK09519 246 KVVKNK 251
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
58-226 |
1.53e-53 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 174.46 E-value: 1.53e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 58 GRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYA-----------GKLGVNVDDLLVSQPDTGEQALE 126
Cdd:cd01393 1 GKITEIYGPPGSGKTQLALQLAANALLLGGGVVWIDTEGAFPPSRLvqileaspsseLELAEALSRLLYFRPPDTLAHLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 127 ITDMLVRSNA----VDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMF 202
Cdd:cd01393 81 ALDSLPESLFpppnTSLVVVDSVSALFRKAFPRGGDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTTKIRGGS 160
|
170 180
....*....|....*....|....*
gi 15598813 203 G-NPETTTGGNALKFYASVRLDIRR 226
Cdd:cd01393 161 GaSLVPPALGNTWEHSVSTRLLLYR 185
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
245-326 |
2.13e-24 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 104.40 E-value: 2.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 245 VVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGKANAAKYLEDNPEIGSVLEKTIRD 324
Cdd:PRK09519 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKE 766
|
..
gi 15598813 325 QL 326
Cdd:PRK09519 767 KL 768
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
39-261 |
2.65e-17 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 79.28 E-value: 2.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEhALDPD----YAG-KLGVNVDDL 113
Cdd:cd01394 1 LSTGSKSLDSLLG-GGVERGTITQIYGPPGSGKTNICLQLAVEAAKQGKKVVYIDTE-GLSPErfqqIAGeRFESIASNI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 114 LVSQP-DTGEQALEI--TDMLVRSNAVDVIIVDSVAALVpKAEiegEMGDAhvGLQARLMSQaLRKITGNIKNANCLVIF 190
Cdd:cd01394 79 IVFEPySFDEQGVAIqeAEKLLKSDKVDLVVVDSATALY-RLE---LGDDS--EANRELSRQ-MSKLLSIARKYDIPVVI 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598813 191 INQIRMKIGVMFGNPettTGGNALKFyasvrldirRTGAVKEGDEVVGSETRVKVVKNKVSPPFRQAEFQI 261
Cdd:cd01394 152 TNQVYSDIDDDRLKP---VGGTLLEH---------WSKAIIRLEKSPPGLRRATLEKHRSRPEGQSAGFRI 210
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
39-206 |
8.88e-14 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 69.56 E-value: 8.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDP--DYAGKLGVNVDDLL-- 114
Cdd:COG0467 2 VPTGIPGLDELLG-GGLPRGSSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYVSFEESPEQllRRAESLGLDLEEYIes 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 115 ----VSQPDTGEQALEITDML------VRSNAVDVIIVDSVAALVpkAEIEGEMgdahvglQARLMsqaLRKITGNIKNA 184
Cdd:COG0467 81 gllrIIDLSPEELGLDLEELLarlreaVEEFGAKRVVIDSLSGLL--LALPDPE-------RLREF---LHRLLRYLKKR 148
|
170 180
....*....|....*....|..
gi 15598813 185 NCLVIFINQIRMKIGVMFGNPE 206
Cdd:COG0467 149 GVTTLLTSETGGLEDEATEGGL 170
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
32-226 |
1.85e-12 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 67.21 E-value: 1.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 32 ERQAIPAISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTLT--LSVIAEAQKQ----GATCAFVDAEHALDP----D 101
Cdd:PRK04301 77 RRKNVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQIChqLAVNVQLPEEkgglEGKAVYIDTEGTFRPerieQ 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 102 YAGKLGVNVDDLL----VSQP-DTGEQAL---EITDMLVRSNAVDVIIVDSVAALVpKAEiegemgdaHVGL------QA 167
Cdd:PRK04301 156 MAEALGLDPDEVLdnihVARAyNSDHQMLlaeKAEELIKEGENIKLVIVDSLTAHF-RAE--------YVGRgnlaerQQ 226
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15598813 168 RL---MSQALRKITGNiknaNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 226
Cdd:PRK04301 227 KLnkhLHDLLRLADLY----NAAVVVTNQVMARPDAFFGDPTQPIGGHILGHTATFRIYLRK 284
|
|
| COG4544 |
COG4544 |
Uncharacterized conserved protein [Function unknown]; |
27-143 |
3.10e-12 |
|
Uncharacterized conserved protein [Function unknown];
Pssm-ID: 443609 [Multi-domain] Cd Length: 230 Bit Score: 65.34 E-value: 3.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 27 RMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPE-SSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGK 105
Cdd:COG4544 17 RGEGLAAAARAVLPTGFAALDAALPGGGLPRGALHEILGPApGIGELGLLLPLLARLAQAGGPVLWIAPPYDLYAPGLAA 96
|
90 100 110
....*....|....*....|....*....|....*...
gi 15598813 106 LGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVD 143
Cdd:COG4544 97 AGLDPERLLLVRARRPADALWAAEEALRSGACGAVVAW 134
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
46-199 |
3.90e-12 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 64.74 E-value: 3.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 46 LDIALGiGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAE-------HALDPDYAGKLGVNVDDLLVSQP 118
Cdd:TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEglsperfKQIAEDRPERALSNFIVFEVFDF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 119 DTGEQALEITDMLVRSNAVDVIIVDSVAALVpKAEIEGEMGDAHVGL--QARLMSQALRKitgniknANCLVIFINQIRM 196
Cdd:TIGR02237 80 DEQGVAIQKTSKFIDRDSASLVVVDSFTALY-RLELSDDRISRNRELarQLTLLLSLARK-------KNLAVVITNQVYT 151
|
...
gi 15598813 197 KIG 199
Cdd:TIGR02237 152 DVN 154
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
39-275 |
7.31e-12 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 64.11 E-value: 7.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEhALDPDYAGKL-GVNVDDLL--- 114
Cdd:PRK09361 5 LPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIaGEDFEELLsni 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 115 -VSQP-DTGEQALEITDM--LVRSNaVDVIIVDSVAALVpKAEIEGEM--GDAHVGLQARLmsQALRKITgniKNANCLV 188
Cdd:PRK09361 83 iIFEPsSFEEQSEAIRKAekLAKEN-VGLIVLDSATSLY-RLELEDEEdnSKLNRELGRQL--THLLKLA---RKHDLAV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 189 IFINQIRMKIGvmfGNPETTTGGNALKFYASVRLDIRRTGavkegdevvGSETRVKVVKNKVSPPFRQAEFQILyGKGIy 268
Cdd:PRK09361 156 VITNQVYSDID---SDGLRPLGGHTLEHWSKTILRLEKFR---------NGKRRATLEKHRSRPEGESAEFRIT-DRGI- 221
|
....*..
gi 15598813 269 rtgEIID 275
Cdd:PRK09361 222 ---EIID 225
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
31-268 |
9.82e-12 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 64.25 E-value: 9.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 31 HERQAIPAISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSVIAEAQK-QGAT---CAFVDAEHALDPD--- 101
Cdd:pfam08423 11 QRRSELIQITTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLchTLCVTCQLPLeMGGGegkALYIDTEGTFRPErlv 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 102 -YAGKLGVNVDDLLVSQP-------DTGEQALEITDMLVRSNAVDVIIVDSVAALVpKAEIE--GEMGDAHVGLqARLMS 171
Cdd:pfam08423 90 aIAERYGLDPEDVLDNVAyaraynsEHQMQLLQQAAAMMSESRFALLIVDSATALY-RTDFSgrGELAERQQHL-AKFLR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 172 qALRKITGNIKNAnclVIFINQIRMKIG---VMF-GNPETTTGGNALKFYASVRLDIRRtgavKEGDEVVgsetrVKVVK 247
Cdd:pfam08423 168 -TLQRLADEFGVA---VVITNQVVAQVDgaaGMFsGDPKKPIGGHIMAHASTTRLSLRK----GRGEQRI-----CKIYD 234
|
250 260
....*....|....*....|...
gi 15598813 248 nkvSP--PFRQAEFQIlYGKGIY 268
Cdd:pfam08423 235 ---SPclPESEAVFAI-GSGGII 253
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
27-261 |
1.59e-11 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 64.37 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 27 RMGDHERQAIPAISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSVIAE-AQKQGA---TCAFVDAEHALDP 100
Cdd:PLN03186 93 SQLHAQRQEIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLchTLCVTCQlPLDQGGgegKAMYIDTEGTFRP 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 101 ----DYAGKLGVNVDDLL-----VSQPDTGEQA---LEITDMLVRSNaVDVIIVDSVAALVpKAEIEGEmGDahvgLQAR 168
Cdd:PLN03186 172 qrliQIAERFGLNGADVLenvayARAYNTDHQSellLEAASMMAETR-FALMIVDSATALY-RTEFSGR-GE----LSAR 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 169 --LMSQALRKITGNIKNANCLVIFINQIRMKI--GVMFGNPETT-TGGNALKFYASVRLdirrtgAVKEGDevvgSETRV 243
Cdd:PLN03186 245 qmHLGKFLRSLQRLADEFGVAVVITNQVVAQVdgSAFFAGPQLKpIGGNIMAHASTTRL------ALRKGR----GENRI 314
|
250
....*....|....*....
gi 15598813 244 -KVVKNKVSPPfRQAEFQI 261
Cdd:PLN03186 315 cKVISSPCLPE-AEARFSI 332
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
39-231 |
1.63e-11 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 63.15 E-value: 1.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSVIAEAQKQ----GATCAFVDAEHALDP----DYAGKLGV 108
Cdd:cd19515 1 ISTGSKELDKLLG-GGIETQAITEVFGEFGSGKTQLchQLAVNVQLPPEegglNGKAVYIDTENTFRPerimQMAKALGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 109 NVDDLL----VSQP-DTGEQAL---EITDMLVRSNAVDVIIVDSVAALVpKAEI--EGEMGDAHVGLqARLMSQALRkiT 178
Cdd:cd19515 80 DPDEVLdniyVARAyNSNHQMLlveKAEDLIKEGNNIKLLIVDSLTSHF-RAEYvgRGTLAERQQKL-NKHLHDLHR--L 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 15598813 179 GNIknANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVK 231
Cdd:cd19515 156 ADL--YNIAVLVTNQVMAKPDAFFGDPTQAIGGHILGHAATFRVYLRKGKGGK 206
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
57-226 |
4.36e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 60.46 E-value: 4.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 57 KGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSqpDTGEQALEITDMLVRSNA 136
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS--GSGELRLRLALALARKLK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 137 VDVIIVDSVAALVPKaeiegemgdahVGLQARLMSQALRKITGNIKNANCLVIFINqirmkigvmfgNPETTTGGNALKF 216
Cdd:smart00382 79 PDVLILDEITSLLDA-----------EQEALLLLLEELRLLLLLKSEKNLTVILTT-----------NDEKDLGPALLRR 136
|
170
....*....|
gi 15598813 217 YASVRLDIRR 226
Cdd:smart00382 137 RFDRRIVLLL 146
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
39-226 |
1.65e-10 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 60.24 E-value: 1.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSVIAEAQKQ----GATCAFVDAEHALDPD----YAGKLGV 108
Cdd:cd01123 1 ITTGSKELDKLLG-GGIETGSITEMFGEFRTGKTQLchTLAVTCQLPIDrgggEGKAIYIDTEGTFRPErlraIAQRFGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 109 NVDDLL----VSQPDTGEQALEITD----MLVRSnAVDVIIVDSVAALVPKAEI-EGEMGDAHVGLqARLMSqALRKITG 179
Cdd:cd01123 80 DPDDVLdnvaYARAFNSDHQTQLLDqaaaMMVES-RFKLLIVDSATALYRTDYSgRGELSARQMHL-AKFLR-MLQRLAD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 15598813 180 NIKNAnclVIFINQIRMKIG---VMFGNPETTTGGNALKFYASVRLDIRR 226
Cdd:cd01123 157 EFGVA---VVVTNQVVAQVDgamMFAADPKKPIGGNILAHASTTRLYLRK 203
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
39-261 |
1.83e-10 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 60.06 E-value: 1.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSVIA----EAQKQGATCAFVDAEHALDPD----YAGKLGV 108
Cdd:cd19514 1 ISTGSTELDKLLG-GGIESMSITEVFGEFRTGKTQLshTLCVTAqlpgSMGGGGGKVAYIDTEGTFRPDrirpIAERFGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 109 N----VDDLLVSQPDTGEQALEITDMLVRSNAVD----VIIVDSVAALVpKAEI--EGEMGDAHVGLqARLMSQaLRKIT 178
Cdd:cd19514 80 DhdavLDNILYARAYTSEHQMELLDYVAAKFHEEavfrLLIIDSIMALF-RVDFsgRGELAERQQKL-AQMLSR-LQKIS 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 179 gniKNANCLVIFINQIRMKIG--VMF-GNPETTTGGNALKFYASVRLDIRRTGAvkegdevvgsETRVKVVKNKVSPPFR 255
Cdd:cd19514 157 ---EEYNVAVFITNQVTADPGaaMTFqADPKKPIGGHILAHASTTRISLRKGRG----------EERIAKIYDSPDLPEN 223
|
....*.
gi 15598813 256 QAEFQI 261
Cdd:cd19514 224 EATFAI 229
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
33-264 |
2.45e-09 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 57.86 E-value: 2.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 33 RQAIPAISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSVIAE-AQKQGATC---AFVDAEHALDPD----Y 102
Cdd:PLN03187 102 RKSVVRITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLahTLCVTTQlPTEMGGGNgkvAYIDTEGTFRPDrivpI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 103 AGKLGVN----VDDLLVSQPDTGEQ---ALEITDMLVRSNAVDVIIVDSVAALVPKAEI-EGEMGDAhvglQARLmSQAL 174
Cdd:PLN03187 181 AERFGMDadavLDNIIYARAYTYEHqynLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTgRGELAER----QQKL-AQML 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 175 RKITGNIKNANCLVIFINQIRMKIG--VMFGNPETTTGGNALKFYASVRLDIRRTGAvkegdevvgsETRVKVVKNKVSP 252
Cdd:PLN03187 256 SRLTKIAEEFNVAVYMTNQVIADPGggMFISDPKKPAGGHVLAHAATIRLMLRKGKG----------EQRVCKVFDAPNL 325
|
250
....*....|..
gi 15598813 253 PFRQAEFQILYG 264
Cdd:PLN03187 326 PEAEAEFQITSG 337
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
47-226 |
2.60e-09 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 56.56 E-value: 2.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 47 DIALGiGGLPKGRIVEIYGPESSGKT----TLTLSVIAEAQKQGAT--CAFVDAEHALDP-------------DYAGKLG 107
Cdd:cd19493 1 DTALA-GGLPLGAITEITGASGSGKTqfalTLASSAAMPARKGGLDggVLYIDTESKFSAerlaeiaearfpeAFSGFME 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 108 VN------VDDLLVSQPDTGEQALEITDML---VRSNAVDVIIVDSVAALVPKaEIEGEMGDA---HVGLqARLMSqALR 175
Cdd:cd19493 80 ENeraeemLKRVAVVRVTTLAQLLERLPNLeehILSSGVRLVVIDSIAALVRR-EFGGSDGEVterHNAL-AREAS-SLK 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 15598813 176 KITgniKNANCLVIFINQIRMKIGVMFGNPETTTG--GNALKFYASVRLDIRR 226
Cdd:cd19493 157 RLA---EEFRIAVLVTNQATTHFGDAGDGSSGVTAalGDAWAHAVNTRLRLER 206
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
33-261 |
1.06e-08 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 55.94 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 33 RQAIPAISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSVIAEAQKQ----GATCAFVDAEHALDPD----Y 102
Cdd:TIGR02238 72 RKKVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLshTLCVTAQLPREmgggNGKVAYIDTEGTFRPDriraI 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 103 AGKLGVN----VDDLLVSQPDTGEQALEITDMLVRSNAVD---VIIVDSVAALVpKAEI--EGEMGDAhvglQARLmSQA 173
Cdd:TIGR02238 151 AERFGVDpdavLDNILYARAYTSEHQMELLDYLAAKFSEEpfrLLIVDSIMALF-RVDFsgRGELSER----QQKL-AQM 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 174 LRKITGNIKNANCLVIFINQIRMKIG--VMF-GNPETTTGGNALKFYASVRLDIRRTGAvkegdevvgsETRVKVVKNKV 250
Cdd:TIGR02238 225 LSRLNKISEEFNVAVFVTNQVQADPGatMTFiADPKKPIGGHVLAHASTTRILLRKGRG----------EERVAKLYDSP 294
|
250
....*....|.
gi 15598813 251 SPPFRQAEFQI 261
Cdd:TIGR02238 295 DMPEAEASFQI 305
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
33-226 |
2.67e-08 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 54.62 E-value: 2.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 33 RQAIPAISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSVIAE---AQKQG-ATCAFVDAEHALDPD----Y 102
Cdd:PTZ00035 94 RKNIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLchTLCVTCQlpiEQGGGeGKVLYIDTEGTFRPErivqI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 103 AGKLGVN----VDDLLVSQPDTGEQALE----ITDMLVRSNAVdVIIVDSVAALVpkaEIE----GEMGDAHVGLqARLM 170
Cdd:PTZ00035 173 AERFGLDpedvLDNIAYARAYNHEHQMQllsqAAAKMAEERFA-LLIVDSATALF---RVDysgrGELAERQQHL-GKFL 247
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 15598813 171 SqALRKITGNIknaNCLVIFINQIRMKIG---VMFGNPETTTGGNALKFYASVRLDIRR 226
Cdd:PTZ00035 248 R-ALQKLADEF---NVAVVITNQVMADVDgasMFVADPKKPIGGHIIAHASTTRLSLRK 302
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
39-195 |
9.73e-08 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 51.88 E-value: 9.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDP--DYAGKLGVNVDDL--- 113
Cdd:cd01124 1 VKTGIPGLDELLG-GGIPKGSVTLLTGGPGTGKTLFGLQFLYAGAKNGEPGLFFTFEESPERllRNAKSFGWDFDEMede 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 114 ----LVSQPDTGEQALEITDML------VRSNAVDVIIVDSVAALvpKAEIEGEMgdahvglQARlmsQALRKITGNIKN 183
Cdd:cd01124 80 gkliIVDAPPTEAGRFSLDELLsrilsiIKSFKAKRVVIDSLSGL--RRAKEDQM-------RAR---RIVIALLNELRA 147
|
170
....*....|..
gi 15598813 184 ANCLVIFINQIR 195
Cdd:cd01124 148 AGVTTIFTSEMR 159
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
39-261 |
1.84e-07 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 51.16 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSV-----IAEAQKQGaTCAFVDAEHALDPD----YAGKLG 107
Cdd:cd19513 1 ITTGSKELDKLLG-GGIETGSITELFGEFRTGKTQLchTLAVtcqlpIDQGGGEG-KALYIDTEGTFRPErllaIAERYG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 108 VNVDDLL--VSQP---DTGEQA---LEITDMLVRSNaVDVIIVDSVAALVpKAEIEGEmGDahvgLQARLM--SQALRKI 177
Cdd:cd19513 79 LNGEDVLdnVAYArayNTDHQMqllIQASAMMAESR-YALLIVDSATALY-RTDYSGR-GE----LSARQMhlAKFLRML 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 178 TGNIKNANCLVIFINQIRMKI--GVMF-GNPETTTGGNALKFYASVRLDIRRTGAvkegdevvgsETRVKVVKNKVSPPF 254
Cdd:cd19513 152 QRLADEFGVAVVITNQVVAQVdgAAMFaGDPKKPIGGNIMAHASTTRLYLRKGRG----------ETRICKIYDSPCLPE 221
|
....*..
gi 15598813 255 RQAEFQI 261
Cdd:cd19513 222 AEAVFAI 228
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
39-226 |
8.55e-07 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 49.17 E-value: 8.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDiALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAE-AQKQGATCAFVDA-EHALD-PDYAGKLGVNVDDLL- 114
Cdd:pfam06745 1 VKTGIPGLD-EILKGGFPEGRVVLITGGPGTGKTIFGLQFLYNgALKYGEPGVFVTLeEPPEDlRENARSFGWDLEKLEe 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 115 --------VSQPDTGEQALEITDML----------VRSNAVDVIIVDSVAALvpkAEIEGEMgdahvglQARlmsQALRK 176
Cdd:pfam06745 80 egklaiidASTSGIGIAEVEDRFDLeelierlreaIREIGAKRVVIDSITTL---FYLLKPA-------VAR---EILRR 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 15598813 177 ITGNIKNANCLVIFINQIRMKigvmfgnpETTTGGNALKFYAS---VRLDIRR 226
Cdd:pfam06745 147 LKRVLKGLGVTAIFTSEKPSG--------EGGIGGYGVEEFIVdgvIRLDLKE 191
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
33-226 |
1.71e-06 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 48.95 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 33 RQAIPAISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTL--TLSVIAE---AQKQG-ATCAFVDAEHALDPD----Y 102
Cdd:TIGR02239 72 RQEVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLchTLAVTCQlpiDQGGGeGKALYIDTEGTFRPErllaI 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 103 AGKLGVNVDDLL--VS-----QPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEI-EGEMGDAHVGLqARLMsQAL 174
Cdd:TIGR02239 151 AERYGLNPEDVLdnVAyarayNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSgRGELSARQMHL-ARFL-RSL 228
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 15598813 175 RKITGNIKNAnclVIFINQIRMKI---GVMF-GNPETTTGGNALKFYASVRLDIRR 226
Cdd:TIGR02239 229 QRLADEFGVA---VVITNQVVAQVdgaGSMFaGDPKKPIGGNIMAHASTTRLSLRK 281
|
|
| KaiC-like_N |
cd19488 |
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
39-150 |
1.34e-05 |
|
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410896 [Multi-domain] Cd Length: 225 Bit Score: 45.80 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVD------------AEHALDPDyagkl 106
Cdd:cd19488 1 ISTGIPGLDDILR-GGLPPRRLYLVEGAPGTGKTTLALQFLLEGAANGETGLYITlseteqelravaLSHGWSLD----- 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15598813 107 GVNVDDLlvSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVP 150
Cdd:cd19488 75 GIHIFEL--SPSESALDAAQQYTILHPSELELSETTRLIFERVE 116
|
|
| FlaH |
COG2874 |
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
39-149 |
8.22e-05 |
|
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility];
Pssm-ID: 442121 Cd Length: 230 Bit Score: 43.28 E-value: 8.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAE----------HALDPDYA----- 103
Cdd:COG2874 3 ISTGNDELDKRLG-GGIPLGSLVLIEGENGTGKSVLSQQFAYGALENGLSVTYISTElttkefikqmKSLSYDISdyllr 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 15598813 104 GKLGVNVDDLLVSQPDTGE--QALEITDMLVRSNAV--DVIIVDSVAALV 149
Cdd:COG2874 82 GRLLFLPVHPLGFEWNSKQrkDLLKRLMKYIASNLWeaDVIIIDSLSALL 131
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
55-191 |
3.55e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 40.59 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 55 LPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAehaldPDYAGKLGVNVDDllvsqpdtGEQALEITDMLVRS 134
Cdd:cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA-----SDLLEGLVVAELF--------GHFLVRLLFELAEK 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 15598813 135 NAVDVIIVDsvaalvpkaeiegEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFI 191
Cdd:cd00009 83 AKPGVLFID-------------EIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGA 126
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
53-82 |
3.82e-04 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 41.08 E-value: 3.82e-04
10 20 30
....*....|....*....|....*....|
gi 15598813 53 GGLPKGRIVEIYGPESSGKTTLTLSVIAEA 82
Cdd:cd19489 2 GGLRTGEITELVGESSSGKTQLCLTAAANV 31
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
59-152 |
6.71e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.25 E-value: 6.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 59 RIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDP-DYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 137
Cdd:pfam13401 6 GILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPkDLLRALLRALGLPLSGRLSKEELLAALQQLLLALAVA 85
|
90
....*....|....*
gi 15598813 138 DVIIVDSVAALVPKA 152
Cdd:pfam13401 86 VVLIIDEAQHLSLEA 100
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
55-254 |
9.53e-04 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 40.65 E-value: 9.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 55 LPKGRIVEIYGPESSGKTTLTLSV---IAEAQ-------KQGaTCAFVDAE----------HALDPDYAGKLGVNVDDLL 114
Cdd:COG3598 10 LPEGGVTLLAGPPGTGKSFLALQLaaaVAAGGpwlgrrvPPG-KVLYLAAEddrgelrrrlKALGADLGLPFADLDGRLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 115 VSQPDTGEQALEITDML---VRSNAVDVIIVDSVAALVPkaeiegemGDAHVGLQARLMSQALRKItgnIKNANCLVIFI 191
Cdd:COG3598 89 LLSLAGDLDDTDDLEALeraIEEEGPDLVVIDPLARVFG--------GDENDAEEMRAFLNPLDRL---AERTGAAVLLV 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15598813 192 NQIRmKIGVMFGNPETTTGGNALKFYASVRLDIRRtgaVKEGDEVVgsetrVKVVKNKVSPPF 254
Cdd:COG3598 158 HHTG-KGGAGKDSGDRARGSSALRGAARSVLVLSR---EKGEDLRV-----LTRAKSNYGPEI 211
|
|
| PRK06067 |
PRK06067 |
flagellar accessory protein FlaH; Validated |
39-155 |
1.13e-03 |
|
flagellar accessory protein FlaH; Validated
Pssm-ID: 180381 Cd Length: 234 Bit Score: 39.96 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 39 ISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAE--------------HALDPDYA- 103
Cdd:PRK06067 7 ISTGNEELDRKLG-GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEntsksylkqmesvkIDISDFFLw 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 15598813 104 GKLGV---NVDDLLVSqPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIE 155
Cdd:PRK06067 86 GYLRIfplNTEGFEWN-STLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEED 139
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
32-145 |
2.26e-03 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 39.05 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 32 ERQAIPAISTGSLGLDIALGiGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDP--DYAGKLGVN 109
Cdd:cd01121 57 EAEEEERISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAQRGGKVLYVSGEESLSQikLRAERLGLG 135
|
90 100 110
....*....|....*....|....*....|....*..
gi 15598813 110 VDDLLVsqpdTGEQALE-ITDMLVRSNAvDVIIVDSV 145
Cdd:cd01121 136 SDNLYL----LAETNLEaILAEIEELKP-SLVVIDSI 167
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
39-91 |
2.49e-03 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 38.85 E-value: 2.49e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 15598813 39 ISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAF 91
Cdd:cd19484 1 ISTGIPRLDAMLGGGGFFRGSSILVSGATGTGKTLLAASFADAACRRGERCLY 53
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
58-199 |
4.10e-03 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 38.10 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 58 GRIVEIYGPESSGKTTLTLSVIAEA-----------QKQGATCAFVDAEHALD-----------------PDYAGKLGVN 109
Cdd:cd19490 1 GDVIEITGPSGSGKTELLYHLAARCilpsswggvplGGLEAAVVFIDTDGRFDilrlrsileariraaiqAANSSDDEED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 110 VDDLLVS--------QPDTGEQaLEIT-----DMLVRSNA---VDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLM--- 170
Cdd:cd19490 81 VEEIAREclqrlhifRCHSSLQ-LLATllsleNYLLSLSAnpeLGLLLIDSISAFYWQDRFSAELARAAPLLQEAALrai 159
|
170 180
....*....|....*....|....*....
gi 15598813 171 SQALRKITgniKNANCLVIFINQIRMKIG 199
Cdd:cd19490 160 LRELRRLR---RRFQLVVIATKQALFPGK 185
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
58-199 |
7.67e-03 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 36.82 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 58 GRIVEIYGPESSGKTTLTLSVIAEAQK-------QGaTCAFVDAE-----HALDP-DYAGKLGV--NVDDLLVSQPDtge 122
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIpkcfgglAG-EAIYIDTEgsfniHYFRVhDYVELLALinSLPKFLEDHPK--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598813 123 qaleitdmlvrsnaVDVIIVDSVAALVpKAEIEgemgdaHVGLQARL---MSQALRKITgniKNANCLVIFINQIRMKIG 199
Cdd:cd19492 77 --------------VKLIVVDSIAFPF-RHDFD------DLAQRTRLlngLAQLLHSLA---RQHNLAVVLTNQVTTKIS 132
|
|
| |
