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Conserved domains on  [gi|15598887|ref|NP_252381|]
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hypothetical protein PA3691 [Pseudomonas aeruginosa PAO1]

Protein Classification

DUF4398 domain-containing protein( domain architecture ID 10627019)

DUF4398 domain-containing protein similar to Pseudomonas aeruginosa PA2901

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4398 pfam14346
Domain of unknown function (DUF4398); This family of proteins is functionally uncharacterized. ...
 40-117 6.00e-13

Domain of unknown function (DUF4398); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 127 and 269 amino acids in length.


:

Pssm-ID: 464144 [Multi-domain]  Cd Length: 78  Bit Score: 59.58  E-value: 6.00e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598887    40 EQFAVTESAVNNAVSAGGPEYAPVEMKSAQDKLSQARIAMNDKEYDQAKRLAQQAEWDARVAERKTQAAKAQKAVKDA 117
Cdd:pfam14346   1 AELAQARAAVDAAEADGAAQYAPLELKRARDALAKAEAAMAEKDYEKARHLAYLAEADAELAEAKARAAKAEAAAAQA 78
 
Name Accession Description Interval E-value
DUF4398 pfam14346
Domain of unknown function (DUF4398); This family of proteins is functionally uncharacterized. ...
 40-117 6.00e-13

Domain of unknown function (DUF4398); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 127 and 269 amino acids in length.


Pssm-ID: 464144 [Multi-domain]  Cd Length: 78  Bit Score: 59.58  E-value: 6.00e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598887    40 EQFAVTESAVNNAVSAGGPEYAPVEMKSAQDKLSQARIAMNDKEYDQAKRLAQQAEWDARVAERKTQAAKAQKAVKDA 117
Cdd:pfam14346   1 AELAQARAAVDAAEADGAAQYAPLELKRARDALAKAEAAMAEKDYEKARHLAYLAEADAELAEAKARAAKAEAAAAQA 78
LpoA COG3107
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ...
 6-119 6.91e-03

Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442341 [Multi-domain]  Cd Length: 610  Bit Score: 35.33  E-value: 6.91e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598887   6 MSKQHTGSLRgLKLALLAVGTSLVLAGCA---GNPPTEQFAVTESA-------VNNAVSAGGPEyapvemkSAQDKLSQA 75
Cdd:COG3107   1 MLPILTKRTS-VSRLLLLLLLALLLAGCAstsTAPQTPAADLQGEAtasaeyyLQQAEQSQPEE-------KADYQLLAA 72

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15598887  76 RIAMNDKEYDQAKRL-----------AQQAEW---DARVAERKTQAAKAQKAVKDAQQ 119
Cdd:COG3107  73 RALLQEGQLAQARALlaqlppqqlspEQQLEYqllLAELALAQGDPEAALALLSQLSL 130
 
Name Accession Description Interval E-value
DUF4398 pfam14346
Domain of unknown function (DUF4398); This family of proteins is functionally uncharacterized. ...
 40-117 6.00e-13

Domain of unknown function (DUF4398); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 127 and 269 amino acids in length.


Pssm-ID: 464144 [Multi-domain]  Cd Length: 78  Bit Score: 59.58  E-value: 6.00e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598887    40 EQFAVTESAVNNAVSAGGPEYAPVEMKSAQDKLSQARIAMNDKEYDQAKRLAQQAEWDARVAERKTQAAKAQKAVKDA 117
Cdd:pfam14346   1 AELAQARAAVDAAEADGAAQYAPLELKRARDALAKAEAAMAEKDYEKARHLAYLAEADAELAEAKARAAKAEAAAAQA 78
LpoA COG3107
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ...
 6-119 6.91e-03

Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442341 [Multi-domain]  Cd Length: 610  Bit Score: 35.33  E-value: 6.91e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598887   6 MSKQHTGSLRgLKLALLAVGTSLVLAGCA---GNPPTEQFAVTESA-------VNNAVSAGGPEyapvemkSAQDKLSQA 75
Cdd:COG3107   1 MLPILTKRTS-VSRLLLLLLLALLLAGCAstsTAPQTPAADLQGEAtasaeyyLQQAEQSQPEE-------KADYQLLAA 72

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15598887  76 RIAMNDKEYDQAKRL-----------AQQAEW---DARVAERKTQAAKAQKAVKDAQQ 119
Cdd:COG3107  73 RALLQEGQLAQARALlaqlppqqlspEQQLEYqllLAELALAQGDPEAALALLSQLSL 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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