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Conserved domains on  [gi|15599280|ref|NP_252774|]
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chaperone CupB2 [Pseudomonas aeruginosa PAO1]

Protein Classification

molecular chaperone( domain architecture ID 11459711)

molecular chaperone belonging to the periplasmic pilus chaperone family may be involved in fimbrial biogenesis; similar to Escherichia coli fimbrial chaperones, YraI, YqiH, YbgP and ElfD

CATH:  2.60.40.10
Gene Ontology:  GO:0061077|GO:0030288|GO:0043711
PubMed:  1683764|8670884
SCOP:  4002248|4007561

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
5-246 1.36e-87

P pilus assembly protein, chaperone PapD [Extracellular structures];


:

Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 259.54  E-value: 1.36e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   5 MHRFhSFVAASAVAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTP 84
Cdd:COG3121   1 MKRL-LRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGPDKATAPFVVTP 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  85 AVTRVEPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDEN--NALQFSFRSRFKLFFRPSQLK-SVDSAAGKLQW 161
Cdd:COG3121  80 PLFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASEEgkNTLQIALRTRIKLFYRPAGLKgSPEDAAEKLTW 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280 162 KFlesggagKKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYGGRNT 241
Cdd:COG3121 160 SL-------VGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGSTRRWPLPAGASLAAGGKVTWATINDYGGAVP 232


                ....*
gi 15599280 242 HDRAL 246
Cdd:COG3121 233 LEATL 237
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
5-246 1.36e-87

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 259.54  E-value: 1.36e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   5 MHRFhSFVAASAVAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTP 84
Cdd:COG3121   1 MKRL-LRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGPDKATAPFVVTP 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  85 AVTRVEPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDEN--NALQFSFRSRFKLFFRPSQLK-SVDSAAGKLQW 161
Cdd:COG3121  80 PLFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASEEgkNTLQIALRTRIKLFYRPAGLKgSPEDAAEKLTW 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280 162 KFlesggagKKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYGGRNT 241
Cdd:COG3121 160 SL-------VGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGSTRRWPLPAGASLAAGGKVTWATINDYGGAVP 232


                ....*
gi 15599280 242 HDRAL 246
Cdd:COG3121 233 LEATL 237
PRK09926 PRK09926
fimbrial chaperone;
1-238 1.60e-77

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 234.23  E-value: 1.60e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280    1 MAPLMHRFHSFVAASAVAIALcvgTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPF 80
Cdd:PRK09926   1 MFFNTKHTTALCFATCMAFSS---SSIADIVISGTRIIYKSDQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPF 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   81 SVTPAVTRVEPNGGAVLRIAYLKA-PLPTDRESLFWLNILEVPPR----DEDENNALQFSFRSRFKLFFRPSQLKSVDS- 154
Cdd:PRK09926  78 TATPPVSRIDPKRGQTIKLMYTAStALPKDRESVFWFNVLEVPPKpdaeKVANQSLLQLAFRTRIKLFYRPDGLKGNPSe 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  155 AAGKLQWKFLESGGagkKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVIN 234
Cdd:PRK09926 158 APLALKWSWAGSEG---KASLRVTNPTPYYVSFSSGDLEAGGKRYPVDSKMIAPFSDESMKVKGLSGKASSGKVHFYAIN 234


                 ....
gi 15599280  235 DYGG 238
Cdd:PRK09926 235 DFGG 238
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 34-150 1.73e-54

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 171.23  E-value: 1.73e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280    34 GTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKAPLPTDRESL 113
Cdd:pfam00345   5 GTRVIYPAGEKEASVTVSNTGDNPYLVQSWVDDGNEEGTDEKAKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPTDRESL 84

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 15599280   114 FWLNILEVPPRD--EDENNALQFSFRSRFKLFFRPSQLK 150
Cdd:pfam00345  85 FWLNVLEIPPKDkpKGGQNGLQLALRSRIKLFYRPAGLA 123
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
5-246 1.36e-87

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 259.54  E-value: 1.36e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   5 MHRFhSFVAASAVAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTP 84
Cdd:COG3121   1 MKRL-LRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGPDKATAPFVVTP 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  85 AVTRVEPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDEN--NALQFSFRSRFKLFFRPSQLK-SVDSAAGKLQW 161
Cdd:COG3121  80 PLFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASEEgkNTLQIALRTRIKLFYRPAGLKgSPEDAAEKLTW 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280 162 KFlesggagKKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYGGRNT 241
Cdd:COG3121 160 SL-------VGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGSTRRWPLPAGASLAAGGKVTWATINDYGGAVP 232


                ....*
gi 15599280 242 HDRAL 246
Cdd:COG3121 233 LEATL 237
PRK09926 PRK09926
fimbrial chaperone;
1-238 1.60e-77

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 234.23  E-value: 1.60e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280    1 MAPLMHRFHSFVAASAVAIALcvgTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPF 80
Cdd:PRK09926   1 MFFNTKHTTALCFATCMAFSS---SSIADIVISGTRIIYKSDQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPF 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   81 SVTPAVTRVEPNGGAVLRIAYLKA-PLPTDRESLFWLNILEVPPR----DEDENNALQFSFRSRFKLFFRPSQLKSVDS- 154
Cdd:PRK09926  78 TATPPVSRIDPKRGQTIKLMYTAStALPKDRESVFWFNVLEVPPKpdaeKVANQSLLQLAFRTRIKLFYRPDGLKGNPSe 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  155 AAGKLQWKFLESGGagkKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVIN 234
Cdd:PRK09926 158 APLALKWSWAGSEG---KASLRVTNPTPYYVSFSSGDLEAGGKRYPVDSKMIAPFSDESMKVKGLSGKASSGKVHFYAIN 234


                 ....
gi 15599280  235 DYGG 238
Cdd:PRK09926 235 DFGG 238
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 34-150 1.73e-54

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 171.23  E-value: 1.73e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280    34 GTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKAPLPTDRESL 113
Cdd:pfam00345   5 GTRVIYPAGEKEASVTVSNTGDNPYLVQSWVDDGNEEGTDEKAKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPTDRESL 84

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 15599280   114 FWLNILEVPPRD--EDENNALQFSFRSRFKLFFRPSQLK 150
Cdd:pfam00345  85 FWLNVLEIPPKDkpKGGQNGLQLALRSRIKLFYRPAGLA 123
PRK15249 PRK15249
fimbrial chaperone;
17-243 4.59e-49

fimbrial chaperone;


Pssm-ID: 237930 [Multi-domain]  Cd Length: 253  Bit Score: 161.89  E-value: 4.59e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   17 VAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEE-LQVPFSVTPAVTRVEPNGGA 95
Cdd:PRK15249  17 LFLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENsSAMPFIATPPVFRIQPKAGQ 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   96 VLRIAYLKA-PLPTDRESLFWLNILEVPPRD---EDENNALQFSFRSRFKLFFRPSQLKSVDSAAGKLQWKFLE--SGGA 169
Cdd:PRK15249  97 VVRVIYNNTkKLPQDRESVFWFNVLQVPPTNigsDSGQNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNkgSGKS 176

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15599280  170 GkktvVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFdWQGNPKNMEAAS--VRYEVINDYGGRNTHD 243
Cdd:PRK15249 177 G----IVIVNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTW-WLPGKRSLKSFSgtVTVTLVNDQGARISES 247
PRK15253 PRK15253
putative fimbrial assembly chaperone protein StcB; Provisional
 15-237 2.64e-45

putative fimbrial assembly chaperone protein StcB; Provisional


Pssm-ID: 185165 [Multi-domain]  Cd Length: 242  Bit Score: 151.74  E-value: 2.64e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   15 SAVAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGG 94
Cdd:PRK15253  20 SAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   95 AVLRIAYLKAPLPTDRESLFWLNILEVPP--RDEDENNALQFSFRSRFKLFFRPSQLKSVDSAAgklqwkFLESGGAGKK 172
Cdd:PRK15253 100 QQIKIKKMPNSLPDNKESLFYLNVLDIPPnsQENAGKNVLKFAMQNRIKLIWRPSRIAAVTKDS------FQRIGLFRSN 173

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15599280  173 TVVQVNNPTPYYVSFASVELivdGRV-MSVGKGMVAPFSTKEFdwqgnpkNMEAASVR-YEV--INDYG 237
Cdd:PRK15253 174 KTVIMKNDTANWITVTDVKA---GNTkINDQTIMLPPLSTQNI-------NMKYASTSqYEVtiIDDNG 232
PRK15218 PRK15218
fimbrial assembly chaperone;
19-156 1.19e-40

fimbrial assembly chaperone;


Pssm-ID: 185140 [Multi-domain]  Cd Length: 226  Bit Score: 139.35  E-value: 1.19e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   19 IALCVGTAH----AGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGG 94
Cdd:PRK15218   5 IALCLACAAmpawSGIYIYGTRIIYPAQKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSG 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15599280   95 AVLRIAYLKAPLPTDRESLFWLNILEVPPrDEDEN---NALQFSFRSRFKLFFRPSQLKSVDSAA 156
Cdd:PRK15218  85 QQLKIKKLANNLPGDRESLFYLNVLDIPP-NSDENkdkNIIKFALQNRIKLIYRPPGVQKVDKAT 148
PRK15295 PRK15295
fimbrial assembly chaperone;
13-237 2.21e-40

fimbrial assembly chaperone;


Pssm-ID: 237936 [Multi-domain]  Cd Length: 226  Bit Score: 138.54  E-value: 2.21e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   13 AASAVAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEElqvPFSVTPAVTRVEPN 92
Cdd:PRK15295   4 KKSVLVVLLTSHVAHASIVVGGTRLVFDGNNDESSINVENKDSKANLVQSWLSVVDPQVTNKQ---AFIITPPLFRLDAG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   93 GGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDED-ENNALQFSFRSRFKLFFRPSQLK--SVDSAAGKLQWkflesGGA 169
Cdd:PRK15295  81 QKNSIRVIRSGAPLPADRESMYWLNIKGIPSIDDNaSANRVEISINTQIKLIYRPPALTksTPDSQSQQLKW-----QTA 155

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15599280  170 GkkTVVQVNNPTPYYVSFASVELivDGRVMSvGKGMVAPFSTKEFDWQgnPKNMEAASVRYEVINDYG 237
Cdd:PRK15295 156 G--DVITVNNPTPYYMNFASVTL--NSHEVK-SATFVPPKSSASFKLG--STAAPHGTVTWRLISDYG 216
lfpB PRK15290
fimbrial chaperone;
15-237 3.33e-37

fimbrial chaperone;


Pssm-ID: 237934 [Multi-domain]  Cd Length: 243  Bit Score: 130.88  E-value: 3.33e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   15 SAVAIALCVG---TAHAGLIAQGTRVVFPASEREVTLRV-SNTSGTPVLAQAWIDDGRQDvppEELQVPFSVTPAVTRVE 90
Cdd:PRK15290  21 TAIILSVFLGqpaLTYAGVVIGGTRVVYLSNNPDKSISVfSKEEKIPYLIQAWVDPFNKE---DKSKAPFTVIPPVSRLE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   91 PNGGAVLRIAYLKAP-LPTDRESLFWLNILEVPPRDEDE-NNALQFSFRSRFKLFFRPSQLKSV-DSAAGKLQWKflesg 167
Cdd:PRK15290  98 PSQEKVLRIIHTKGVsLPDDRESVFWLNIKNIPPSASNKaTNSLEIAVKTRIKLFWRPASIRLIpEDAAPKVKWR----- 172

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  168 GAGKKTVVQvnNPTPYYVSFASVelIVDGRvmSVGKGMVAPFSTKEFDWqgnPKNMEAASVRYEVINDYG 237
Cdd:PRK15290 173 REGRNLIAE--NPNPIHISVMDV--IVDGH--DVPLNMIRPFETLTLPL---PANSAGGQMTWRFINDYG 233
PRK15246 PRK15246
fimbrial assembly chaperone;
24-248 6.53e-34

fimbrial assembly chaperone;


Pssm-ID: 185158 [Multi-domain]  Cd Length: 233  Bit Score: 121.99  E-value: 6.53e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   24 GTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYL- 102
Cdd:PRK15246   6 GPAQAAVNIDRTRIIFASDDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSs 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  103 KAPLPTDRESLFWLNILEVPPRDEDENNA---LQFSFRSRFKLFFRPSQLKSVDSA-AGKLQWKFLESGgagkktvVQVN 178
Cdd:PRK15246  86 RQQLATDRESLFWLNIYQIPPVTQDIKNHprkLVLPLRLRLKILIRPTGLKAPTEAeEKKLRFIAKENT-------IRIV 158

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  179 NPTPYYVSFAsVELIvdgRVMSVGKGMVAPFSTKEFDWQGNPKnmEAASVRYEVINDYGGRNTHDRALGK 248
Cdd:PRK15246 159 NPTSWYMSLT-LTMD---NKKSIGDIMVAPKTALDVPLTRSPT--PGASINYAVINDSGNWRQYTAILEK 222
PRK15211 PRK15211
fimbrial chaperone;
11-239 3.69e-33

fimbrial chaperone;


Pssm-ID: 185133 [Multi-domain]  Cd Length: 229  Bit Score: 119.93  E-value: 3.69e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   11 FVAASAVAIALCvGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDvppeELQVPFSVTPAVTRVE 90
Cdd:PRK15211   6 WGLVSLLSLAVC-GQAMAAFVLNGTRFIYDEGRKNISFEVTNQADQTYGGQVWIDNTTQG----SSTVYMVPAPPFFKVR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   91 PNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPR-DEDENNALQFSFRSRFKLFFRPSQLKSVDSAAGKlQWKFLESGGa 169
Cdd:PRK15211  81 PKEKQIIRIMKTDSALPKDRESLFWLNVQEIPPKpKASEGNVLAVALNTQVKLIYRPKALKEGRENAEK-NLQIIHRGG- 158

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15599280  170 gkKTVVQvnNPTPYYvsFASVELIVDGRVMSVGK------GMVAPFSTKEFDwqgnpKNMEAASVRYEVINDYGGR 239
Cdd:PRK15211 159 --ETYLK--NPTPYY--FAVTGVKLNGQPVKLSDrvmneiAQLAPFSEVSLG-----KLSLNGTVTVQAVNDWGGT 223
PRK15195 PRK15195
molecular chaperone FimC;
28-237 5.33e-31

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 114.57  E-value: 5.33e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   28 AGLIAQG-TRVVFPASEREVTLRVSNT-SGTPVLAQAWIDDGRQdvppeELQVPFSVTPAVTRVEPNGGAVLRIAYLKAP 105
Cdd:PRK15195  24 AGGIALGaTRVIYPADAKQTSLAIRNShTNERYLVNSWIENSSG-----VKEKSFIVTPPLFVSEPKSENTLRIIYAGPP 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  106 LPTDRESLFWLNILEVPPRDEDE---NNALQFSFRSRFKLFFRPSQLKSVDSAAGKlQWKFLESGgagkkTVVQVNNPTP 182
Cdd:PRK15195  99 LAADRESLFWMNVKAIPSVDKNAlegRNVLQLAILSRIKLFVRPINLQELPEEAPD-TLKFSRSG-----NHLKVHNPSP 172

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15599280  183 YYVSFasVELIVDGRvmSVGKGMVAPFSTKEfdwQGNPKNMEaASVRYEVINDYG 237
Cdd:PRK15195 173 YYVTL--VNLQVGSQ--KLGNAMIAPKVNSQ---IPLPSGVQ-GKLKFQTVNDYG 219
PRK15208 PRK15208
molecular chaperone LpfB;
12-237 7.13e-31

molecular chaperone LpfB;


Pssm-ID: 237925 [Multi-domain]  Cd Length: 228  Bit Score: 113.85  E-value: 7.13e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   12 VAASAVAIALCVGTAHAGLIA-QGTRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDGRQDVppeelQVPFSVTPAVTRV 89
Cdd:PRK15208   4 ISFTALALALIAQNSFAGGVAlSSTRVIYDGSKKEASLTVNNKSKTeEFLIQSWIDDANGNK-----KTPFIITPPLFKL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   90 EPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDED-EN-NALQFSFRSRFKLFFRPSQLK-SVDSAAGKLQWKfles 166
Cdd:PRK15208  79 DPTKNNVLRIVNITNTLPQDRESVYWINVKAIPAKSEDaENkNVLQIAVRTRLKLFYRPAGLKgNSMDAWNKLRFT---- 154

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15599280  167 gGAGKKtvVQVNNPTPYYVSFAsvELIVDGRVMSvGKGMVAPFSTKEFDWQGNPKNmeAASVRYEVINDYG 237
Cdd:PRK15208 155 -RAGNQ--IKVENPSAFNLTFN--QFYANGRDIE-KAGMVPAKGSLNIELPAGTGK--VSEVKYNIINDFG 217
PRK15299 PRK15299
fimbrial chaperone protein StiB; Provisional
 9-238 1.32e-30

fimbrial chaperone protein StiB; Provisional


Pssm-ID: 185199 [Multi-domain]  Cd Length: 227  Bit Score: 113.34  E-value: 1.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280    9 HSFVAASAVAIALCVGTAHAGLIAQGT-RVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEElqVPFSVTPAVT 87
Cdd:PRK15299   2 NSLAKAGLLCCLLCGSLAHAAGINIGTtRVIFHGDAKDASISISNSDNVPYLIQSWAQSISETGASGD--APFMVTPPLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   88 RVEPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDED-ENNALQFSFRSRFKLFFRPSQL-KSVDSAAGKLQWkfle 165
Cdd:PRK15299  80 RLNGGQKNVLRIIRTGGNLPEDRESLYWLDIKSIPSSNPDnKHNTLMLAVKAEFKLIYRPKALtQKPEEVADRLTW---- 155

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15599280  166 sggAGKKTVVQVNNPTPYYVSFASVELivdGRVMSVGKGMVAPFSTKEFDWQGnpknMEAASVRYEVINDYGG 238
Cdd:PRK15299 156 ---SRQGRTLTVKNPTPYYMNFATLSV---GSQKVKAPRYVAPFGNAQYTLPA----AASGPIAWSIINDFGG 218
PRK15285 PRK15285
fimbrial chaperone StfD;
24-239 4.47e-28

fimbrial chaperone StfD;


Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 107.17  E-value: 4.47e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   24 GTAHAGLIAQGTRVVFPASEREVTLRVSNT-SGTPVLAQAWIDDGRQdvppEELQVPFSVTPAVTRVEPNGGAVLRIAYL 102
Cdd:PRK15285  21 GSAQAAIAPDRTRLVFRGEDKSISVDLKNAnSKLPYLAQSWVEDEKG----VKITSPLIVVPPVQRIEPSAIGQVKIQGM 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  103 KA--PLPTDRESLFWLNILEVPPRdEDENNALQFSFRSRFKLFFRPSQLKSVDSaagKLQWKF---LESGGAGkktvVQV 177
Cdd:PRK15285  97 PAlaSLPQDRETLFYYNVREIPPQ-SDKPNTLQIALQTRIKVFYRPQALSKIDM---QHPWQYkitLQRQGNG----YQV 168

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15599280  178 NNPTPYYVSFASVELIVDGrvmSVGKG----MVAPFSTKEFDwqGNPKNMEAASVrYEVINDYGGR 239
Cdd:PRK15285 169 SNPTGYYVVLSNASNRMDG---TPARGfsplVIAPKSNVTLG--GDASELGHSPV-LTYVNDYGAR 228
PRK15224 PRK15224
pili assembly chaperone PapD;
1-240 1.11e-27

pili assembly chaperone PapD;


Pssm-ID: 185146 [Multi-domain]  Cd Length: 237  Bit Score: 105.98  E-value: 1.11e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280    1 MAPLMHRFHSFVAASAVAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPpeelqVPF 80
Cdd:PRK15224   1 MAAVLFVSNSITPVYAAEQKLNLNTKSFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKSSP-----APF 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   81 SVTPAVTRVEPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDENNA-------LQFSFRSRFKLFFRPSQLKSV- 152
Cdd:PRK15224  76 LVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPENEPSDTQakgatldLNLSINVCDKLIFRPDAVKGTp 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  153 DSAAGKLQWkfLESGGAgkktvVQVNNPTPYYVSFASVelIVDGRVMSvGKGMVAPFSTKEFDWQGNPKnmeaASVRYEV 232
Cdd:PRK15224 156 EDVAGNLRW--VETGNK-----LKVENPTPFYMNLASV--TVGGKPIT-GLEYIPPFADKTLNMPGSAH----GDIEWRV 221


                 ....*...
gi 15599280  233 INDYGGRN 240
Cdd:PRK15224 222 ITDFGGES 229
PRK15192 PRK15192
pili/flagellar-assembly chaperone;
21-237 7.79e-27

pili/flagellar-assembly chaperone;


Pssm-ID: 185114 [Multi-domain]  Cd Length: 234  Bit Score: 103.63  E-value: 7.79e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   21 LCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQ--DVPPEELQVPFSVTPAVTRVEPNGGAVLR 98
Cdd:PRK15192  15 LPISWAQAGVVIGGTRFIYHAGAPALSVPVSNHSEASWLIDTHILPGGRwpGTKNEGNITPFVVTPPLFMLSARQENSMR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   99 IAYLKAPLPTDRESLFWLNILEVpPRDEDENNALQFSFRSRFKLFFRPSQLKSVDSAAGK-LQWKFLESGGAgkktvvqV 177
Cdd:PRK15192  95 VVYTGAPLPADRESLFTLSIAAI-PSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQAYRhLIWSLTPDGAT-------V 166

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  178 NNPTPYYVSFasVELIVDGRVMSvGKGMVAPFSTKEFDWqgnPKNMEAASVRYEVINDYG 237
Cdd:PRK15192 167 RNPTPYYVTL--FLLRANERAQD-NAGVVAPFATRQTDW---CRHTVRCTVRWQSINDYG 220
PRK11385 PRK11385
fimbrial chaperone;
16-238 3.96e-25

fimbrial chaperone;


Pssm-ID: 183112 [Multi-domain]  Cd Length: 236  Bit Score: 99.05  E-value: 3.96e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   16 AVAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSgtpvlAQAWIDDGRQDVP-------PEELQVPFSVTPAVTR 88
Cdd:PRK11385  14 AVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTS-----QESWLINSKINRPtrwaggeASTVPAPLLAAPPLIL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   89 VEPNGGAVLRIAYLKAP-LPTDRESLFWLNILEVpPRDEDENNALQFSFRSRFKLFFRPSQLKSVD-SAAGKLQWKFLES 166
Cdd:PRK11385  89 LKPGTTGTLRLLRTESDiLPVDRETLFELSIASV-PSGKVENQSVKVAMRSVFKLFWRPEGLPGDPlEAYQQLRWTRNSQ 167

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15599280  167 GgagkktvVQVNNPTPYYVSFasVELIVDGRVMSvGKGMVAPFSTKEFDWqgnPKNMEAASVRYEVINDYGG 238
Cdd:PRK11385 168 G-------VQLTNPTPYYINL--IQVSVNGKALS-NAGVVPPKSQRQTSW---CQAIAPCHVAWRAINDYGG 226
PRK15274 PRK15274
putative periplasmic fimbrial chaperone protein SteC; Provisional
 5-185 3.42e-24

putative periplasmic fimbrial chaperone protein SteC; Provisional


Pssm-ID: 185177 [Multi-domain]  Cd Length: 257  Bit Score: 97.16  E-value: 3.42e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280    5 MHRFHSFVAASAVAIALCVG--TAHAGLIAQGTRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDgrqDVPPEELQVpFS 81
Cdd:PRK15274   1 MNKTNHFKRQALIASVLLAAplVSHSAIVPDRTRVIFNGNENSITVTLKNGNATlPYLAQAWLED---DKFAKDTRY-FT 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   82 VTPAVTRVEPNGGAVLRIAYLKAP--LPTDRESLFWLNILEVPPRdEDENNALQFSFRSRFKLFFRPSQLKSVDSAAGKL 159
Cdd:PRK15274  77 ALPPLQRIEPKSDGQVKVQPLPAAasLPQDRESLFYFNVREIPPK-SDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPW 155

                        170       180
                 ....*....|....*....|....*..
gi 15599280  160 QWKF-LESGGAGkktvVQVNNPTPYYV 185
Cdd:PRK15274 156 QTKLtLTYQGDG----VIFDNPTPFYL 178
PRK15254 PRK15254
fimbrial chaperone protein StdC; Provisional
 35-238 1.43e-22

fimbrial chaperone protein StdC; Provisional


Pssm-ID: 185166 [Multi-domain]  Cd Length: 239  Bit Score: 92.53  E-value: 1.43e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   35 TRVVFPASEREVTLRVSNT-SGTPVLAQAWIDDG---RQDVppeelqvpFSVTPAVTRVEPNGGAVLRIAYLKA---PLP 107
Cdd:PRK15254  23 TRIIMDAPQKTVAITLNNDdKTTPFLAQSWVTDAdgvRTDA--------LMALPPLQRIDAGQKSQVRITQVRGltdKLP 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  108 TDRESLFWLNILEVPPRDEDEnNALQFSFRSRFKLFFRPSQLksVDSAAGKLQWKFLESGGAGKKTvvqVNNPTPYYVSF 187
Cdd:PRK15254  95 QDRETLFWFNVRGVPPKPEDD-NVLQLAMQSQLKLFYRPKAI--IRSSSDQPERKLTAERNAGHLT---LRNPTPYYITV 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15599280  188 ASVELIVDGRVMSVGKG-MVAPFSTKEFDwQGNPKNMEAASVRYevINDYGG 238
Cdd:PRK15254 169 AWLGADRSHRLSGFREGvMVPPLGSLPLK-AVLPAETRTLWVGY--IDDYGG 217
PRK15188 PRK15188
fimbrial chaperone protein BcfB; Provisional
 3-208 3.63e-21

fimbrial chaperone protein BcfB; Provisional


Pssm-ID: 185110 [Multi-domain]  Cd Length: 228  Bit Score: 88.67  E-value: 3.63e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280    3 PLMHRFHSFVAASAVAIAlcvgtAHAGLIAQG-TRVVFPASEREVTLRVSNTSGTPV-LAQAWID--DGRQdvppeelQV 78
Cdd:PRK15188   6 PIFLRLLLLLSAAGLSFA-----AQAGGIALGaTRVIYPQGSKQTSLPIINSSASNVfLIQSWVAnaDGSR-------ST 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   79 PFSVTPAVTRVEPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDE--NNALQFSFRSRFKLFFRPSQLKSVDSAA 156
Cdd:PRK15188  74 DFIITPPLFVIQPKKENILRIMYVGPSLPTDRESVFYLNSKAIPSVDKNKltGNSLQIATQSVIKLFIRPKNLAEAPAHA 153

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15599280  157 GKLQWKFLESGGagkktvVQVNNPTPYYVSFasVELIVDGRVMSvgKGMVAP 208
Cdd:PRK15188 154 PSTLRCRNERGQ------LTITNPSPYYVSM--VELYSAGKKLP--NTMVPP 195
PapD_C pfam02753
Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is ...
 177-241 4.77e-21

Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.


Pssm-ID: 426960 [Multi-domain]  Cd Length: 63  Bit Score: 83.47  E-value: 4.77e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15599280   177 VNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKefDWQGNPKNMEAASVRYEVINDYGGRNT 241
Cdd:pfam02753   1 VKNPTPYYVTFSSLSLGGGGKELALDPGMVAPFSSQ--TFAGLPAPAAGGTVSYTYINDYGGIVP 63
PRK09918 PRK09918
putative fimbrial chaperone protein; Provisional
 6-237 7.13e-17

putative fimbrial chaperone protein; Provisional


Pssm-ID: 236632 [Multi-domain]  Cd Length: 230  Bit Score: 77.00  E-value: 7.13e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280    6 HRFHSFVAASAVAIALCVGTAHA-GLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIddgrQDVpPEELQVPFSVTP 84
Cdd:PRK09918   1 NRFNLFFLFTALVLLSSSSAVHAaGMVPETSVVIVEESDGEGSINVKNTDSNPILLYTTL----VDL-PEDKSKLLLVTP 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   85 AVTRVEPngGAVLRIAY-LKAPLPTDRESLFWLNILEVPPRDEDeNNALQFSFRSRFKLFFRPSQLKSVDSAagklqWKF 163
Cdd:PRK09918  76 PVARVEP--GQSQQVRFiLKSGSPLNTEHLLRVSFEGVPPKPGG-KNKVVMPIRQDLPVLIQPAALPVVRDP-----WKL 147

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15599280  164 LESGGAGKKtvVQVNNPTPYYVSFA-SVELIVDGRVMSVGKGMVAPFSTKEFdwQGNPKNMEAASVRYEVINDYG 237
Cdd:PRK09918 148 LVWSISGNN--LVVSNPSPYVVRLGqQVILLPSGKVVALPKPYILPGESLTV--AITNSKATDTKVRFFPASRYG 218
PRK15233 PRK15233
fimbrial chaperone SefB;
29-209 1.96e-11

fimbrial chaperone SefB;


Pssm-ID: 185149 [Multi-domain]  Cd Length: 246  Bit Score: 62.05  E-value: 1.96e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280   29 GLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWI--DDgrqdvppEELQVPFSVTPAVTRVEPNGGAVLRIAYLKAPL 106
Cdd:PRK15233  41 GLRLGTTRVIYKEDAPSTSFWIMNEKEYPILVQTQVynDD-------KSSKAPFIVTPPILKVESNARTRLKVIPTSNLF 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599280  107 PTDRESLFWLNILEVPPRDEDENN---------ALQFSFRSRFKLFFRPsqlKSVDSAAGKLQWKF-LESGGagkkTVVQ 176
Cdd:PRK15233 114 NKNEESLYWLCVKGVPPLNDNESNnknnittnlNVNVVTNSCIKLIYRP---KTIDLTTMEIADKLkLERKG----NSIV 186

                        170       180       190
                 ....*....|....*....|....*....|....
gi 15599280  177 VNNPTPYYVSFASVElivDGRV-MSVGKGMVAPF 209
Cdd:PRK15233 187 IKNPTSSYVNIANIK---SGNLsFNIPNGYIEPF 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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