NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15599350|ref|NP_252844|]
View 

hypothetical protein PA4155 [Pseudomonas aeruginosa PAO1]

Protein Classification

LLM class oxidoreductase( domain architecture ID 139659)

LLM (luciferase-like monooxygenase) class oxidoreductase may be a flavin-utilizing monoxygenase or a F420-dependent oxidoreductase

CATH:  3.20.20.30
EC:  1.-.-.-
Gene Ontology:  GO:0016491
SCOP:  3000585

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Flavin_utilizing_monoxygenases super family cl19096
Flavin-utilizing monoxygenases
22-431 8.47e-130

Flavin-utilizing monoxygenases


The actual alignment was detected with superfamily member TIGR03860:

Pssm-ID: 450250 [Multi-domain]  Cd Length: 422  Bit Score: 381.08  E-value: 8.47e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350    22 AWRRPDSNIEGIFGSDFAVDIARRSEAAHLDFVFRPDVSSL---PLDVLETGSGFASLDPTVLLAAVARETSRIGLVSTV 98
Cdd:TIGR03860  14 LWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVydvPDAALRRAAQLPRFEPLTLLSALAAVTEHIGLGATA 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350    99 STTFYPPYVVARQLQSLHWISDGRAGWNIVTALQGHE--NFGLDAMPDAEQRYARAAEFTRLVHDLWDSFPREALLVDRE 176
Cdd:TIGR03860  94 STTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAarNFGLDEHPPHDERYERAEEFVDVVYKLWDSWEDDAFVRDKA 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   177 SGRYADVSRVRPVDHDGEFLKVKGPLNLPAFGEARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAE 256
Cdd:TIGR03860 174 SGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLEDAQAFYADIKARAA 253
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   257 RHGRSPRDVRLLPGFSLYLAESREEAREIFMQTHARLDRARKFAAIRQMLGLDLSDWPLDRPISaaDLPPpvaNPGSRTH 336
Cdd:TIGR03860 254 AAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWTGIDLSQYDLDAPLP--DLPT---EAGQKSR 328
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   337 TDLLRRLIERETLRLDQLLLRpEVISAAHWQVIGTVDDAVEQIVDWAAAGAMDGFIAAPGGSVGSLRLFLEQVVPRLVEK 416
Cdd:TIGR03860 329 FDLILELARRENLTLRQLALR-LAGGRGHPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFVDLVVPELQRR 407
                         410
                  ....*....|....*
gi 15599350   417 GLFRERYSATTFAGH 431
Cdd:TIGR03860 408 GLFRTEYEGGTLREH 422
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
22-431 8.47e-130

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 381.08  E-value: 8.47e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350    22 AWRRPDSNIEGIFGSDFAVDIARRSEAAHLDFVFRPDVSSL---PLDVLETGSGFASLDPTVLLAAVARETSRIGLVSTV 98
Cdd:TIGR03860  14 LWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVydvPDAALRRAAQLPRFEPLTLLSALAAVTEHIGLGATA 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350    99 STTFYPPYVVARQLQSLHWISDGRAGWNIVTALQGHE--NFGLDAMPDAEQRYARAAEFTRLVHDLWDSFPREALLVDRE 176
Cdd:TIGR03860  94 STTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAarNFGLDEHPPHDERYERAEEFVDVVYKLWDSWEDDAFVRDKA 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   177 SGRYADVSRVRPVDHDGEFLKVKGPLNLPAFGEARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAE 256
Cdd:TIGR03860 174 SGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLEDAQAFYADIKARAA 253
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   257 RHGRSPRDVRLLPGFSLYLAESREEAREIFMQTHARLDRARKFAAIRQMLGLDLSDWPLDRPISaaDLPPpvaNPGSRTH 336
Cdd:TIGR03860 254 AAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWTGIDLSQYDLDAPLP--DLPT---EAGQKSR 328
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   337 TDLLRRLIERETLRLDQLLLRpEVISAAHWQVIGTVDDAVEQIVDWAAAGAMDGFIAAPGGSVGSLRLFLEQVVPRLVEK 416
Cdd:TIGR03860 329 FDLILELARRENLTLRQLALR-LAGGRGHPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFVDLVVPELQRR 407
                         410
                  ....*....|....*
gi 15599350   417 GLFRERYSATTFAGH 431
Cdd:TIGR03860 408 GLFRTEYEGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
22-419 2.55e-99

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 300.78  E-value: 2.55e-99
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  22 AWRRPDSNIEGIFGSDFAVDIARRSEAAHLDFVFRPDvsSLPLDVLETGSGFASLDPTVLLAAVARETSRIGLVSTVSTT 101
Cdd:cd01095  15 AAWRHPAPPDASIDFDHYVRLARTAERAKFDAVFLAD--GLAIRALSRPHPVARLEPLTLLAALAAVTERIGLVATASTT 92
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 102 FYPPYVVARQLQSLHWISDGRAGWNIVTALQGHE--NFGLDAMPDAEQRYARAAEFTRLVHDLWDSFPREALLVDRESGR 179
Cdd:cd01095  93 YNEPYHLARRFASLDHISGGRAGWNVVTSANPGEarNFGRDEHPEHDERYARAEEFVEVVKGLWDSWEDDALVRDKASGR 172
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 180 YADVSRVRPVDHDGEFLKVKGPLNLPAFGEARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAERHG 259
Cdd:cd01095 173 FADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTLEEAQAFYADVKARAAAAG 252
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 260 RsprdvrllpgfslylaesreeareifmqtharldrarkfaairqmlgldlsdwpldrpisAADLPPPVANPGSRTHTDL 339
Cdd:cd01095 253 R------------------------------------------------------------LDPPPPDLPDLGSRLSASR 272
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 340 LRRL-IERETLRLDQLLLRPEVI------SAAHWQVIGTVDDAvEQIVDWAAAGAMDGFIAAPGGSVGSLRLFLEQVVPR 412
Cdd:cd01095 273 LLLAdLLARGGLHRREVGTAREVadrlerAAGGGTVVGPEQIA-DELEEWFEAGAADGFNIMPPYLPGGLDDFVDLVVPE 351

                ....*..
gi 15599350 413 LVEKGLF 419
Cdd:cd01095 352 LQRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
47-413 1.55e-55

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 185.91  E-value: 1.55e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  47 EAAHLDFVFRPDVSSLPldvletgsGFASLDPTVLLAAVARETSRIGLVS-TVSTTFYPPYVVARQLQSLHWISDGRAGW 125
Cdd:COG2141   2 ERLGFDRVWVADHHFPP--------GGASPDPWVLLAALAAATSRIRLGTgVVVLPLRHPLVVAEQFATLDHLSGGRLDL 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 126 NIVTA--LQGHENFGLDAmpdaEQRYARAAEFTRLVHDLWDSfpreallvdresgryadvsrvRPVDHDGEFLKVKGPLN 203
Cdd:COG2141  74 GVGRGwgPDEFAAFGLDH----DERYERFEEALEVLRRLWTG---------------------EPVTFEGEFFTVEGARL 128
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 204 LPA-FGEARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAERHGRSPRDVRLLPGFSLYLAESREEA 282
Cdd:COG2141 129 VPRpVQGPHPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVIVAETDEEA 208
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 283 REIFMQTHARLDRARKFAAIRQMlgldlsdwpldrpisaadlpppvanpgsrthtdllrrlieretlrLDQLLLRPEVIS 362
Cdd:COG2141 209 RERARPYLRALLALPRGRPPEEA---------------------------------------------EEGLTVREDLLE 243
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15599350 363 AAHWQVIGTVDDAVEQIVDWAAAGAMDGFI-----AAPGGSVGSLRLFLEQVVPRL 413
Cdd:COG2141 244 LLGAALVGTPEQVAERLEELAEAAGVDEFLlqfpgLDPEDRLRSLELFAEEVLPLL 299
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
37-387 1.07e-36

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 136.34  E-value: 1.07e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350    37 DFAVDIARRSEAAHLDFVFrpdvsslpldVLETGSGFASLDPTVLLAAVARETSRIGLVSTVST-TFYPPYVVARQLQSL 115
Cdd:pfam00296  23 RYLVELARAAEELGFDGVW----------LAEHHGGPGGPDPFVVLAALAAATSRIRLGTAVVPlPTRHPAVLAEQAATL 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   116 HWISDGRAGWNIVTALQGHE--NFGLDAmpdaEQRYARAAEFTRLVHDLWDSfpreallvdresgryadvsrvRPVDHDG 193
Cdd:pfam00296  93 DHLSGGRFDLGLGTGGPAVEfrRFGVDH----DERYARLREFLEVLRRLWRG---------------------EPVDFEG 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   194 EFLKVKGPLNLPAfGEARIPLVQAGASESGRDFAASVAD-LVFAPTPDKEAALELRRDLSRRAERHGRSPRDVRLLPGFS 272
Cdd:pfam00296 148 EFFTLDGAFLLPR-PVQGIPVWVAASSPAMLELAARHADgLLLWGFAPPAAAAELIERVRAGAAEAGRDPADIRVGASLT 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   273 LYLAESREEAREIFMQTHARLDRARKFAAIRQMLGLdlsdwpldrpisaadlpppvanpGSRTHTDLLRRLIERetlrlD 352
Cdd:pfam00296 227 VIVADTEEEARAEARALIAGLPFYRMDSEGAGRLAE-----------------------AREIGEEYDAGDWAG-----A 278
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 15599350   353 QLLLRPEVISAAhwQVIGTVDDAVEQIVDWAAAGA 387
Cdd:pfam00296 279 ADAVPDELVRAF--ALVGTPEQVAERLAAYAEAGV 311
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
77-263 9.22e-11

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 63.05  E-value: 9.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   77 DPTVLLAAVARETSRIGLVSTVSTTFYPPYVVARQLQSLHWISDGRAGWNIVTALQGHENFGLDAMPDAEQRYARAAEFT 156
Cdd:PRK00719  55 DAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLDRLSNGRLLINLVTGGDPAELAGDGLFLDHDERYEASAEFL 134
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  157 RlvhdLWdsfpREalLVDRESgryadvsrvrpVDHDGEFLKVKGP-LNLPAFGEARIPLVQAGASESGRDFAASVADLVF 235
Cdd:PRK00719 135 R----IW----RR--LLEGET-----------VDFEGKHIQVKGAkLLFPPVQQPYPPLYFGGSSDAAQELAAEQVDLYL 193
                        170       180
                 ....*....|....*....|....*...
gi 15599350  236 APTPDKEAALELRRDLSRRAERHGRSPR 263
Cdd:PRK00719 194 TWGEPPAQVKEKIEQVRAKAAAHGRKVR 221
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
22-431 8.47e-130

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 381.08  E-value: 8.47e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350    22 AWRRPDSNIEGIFGSDFAVDIARRSEAAHLDFVFRPDVSSL---PLDVLETGSGFASLDPTVLLAAVARETSRIGLVSTV 98
Cdd:TIGR03860  14 LWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVydvPDAALRRAAQLPRFEPLTLLSALAAVTEHIGLGATA 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350    99 STTFYPPYVVARQLQSLHWISDGRAGWNIVTALQGHE--NFGLDAMPDAEQRYARAAEFTRLVHDLWDSFPREALLVDRE 176
Cdd:TIGR03860  94 STTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAarNFGLDEHPPHDERYERAEEFVDVVYKLWDSWEDDAFVRDKA 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   177 SGRYADVSRVRPVDHDGEFLKVKGPLNLPAFGEARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAE 256
Cdd:TIGR03860 174 SGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLEDAQAFYADIKARAA 253
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   257 RHGRSPRDVRLLPGFSLYLAESREEAREIFMQTHARLDRARKFAAIRQMLGLDLSDWPLDRPISaaDLPPpvaNPGSRTH 336
Cdd:TIGR03860 254 AAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWTGIDLSQYDLDAPLP--DLPT---EAGQKSR 328
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   337 TDLLRRLIERETLRLDQLLLRpEVISAAHWQVIGTVDDAVEQIVDWAAAGAMDGFIAAPGGSVGSLRLFLEQVVPRLVEK 416
Cdd:TIGR03860 329 FDLILELARRENLTLRQLALR-LAGGRGHPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFVDLVVPELQRR 407
                         410
                  ....*....|....*
gi 15599350   417 GLFRERYSATTFAGH 431
Cdd:TIGR03860 408 GLFRTEYEGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
22-419 2.55e-99

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 300.78  E-value: 2.55e-99
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  22 AWRRPDSNIEGIFGSDFAVDIARRSEAAHLDFVFRPDvsSLPLDVLETGSGFASLDPTVLLAAVARETSRIGLVSTVSTT 101
Cdd:cd01095  15 AAWRHPAPPDASIDFDHYVRLARTAERAKFDAVFLAD--GLAIRALSRPHPVARLEPLTLLAALAAVTERIGLVATASTT 92
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 102 FYPPYVVARQLQSLHWISDGRAGWNIVTALQGHE--NFGLDAMPDAEQRYARAAEFTRLVHDLWDSFPREALLVDRESGR 179
Cdd:cd01095  93 YNEPYHLARRFASLDHISGGRAGWNVVTSANPGEarNFGRDEHPEHDERYARAEEFVEVVKGLWDSWEDDALVRDKASGR 172
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 180 YADVSRVRPVDHDGEFLKVKGPLNLPAFGEARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAERHG 259
Cdd:cd01095 173 FADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTLEEAQAFYADVKARAAAAG 252
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 260 RsprdvrllpgfslylaesreeareifmqtharldrarkfaairqmlgldlsdwpldrpisAADLPPPVANPGSRTHTDL 339
Cdd:cd01095 253 R------------------------------------------------------------LDPPPPDLPDLGSRLSASR 272
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 340 LRRL-IERETLRLDQLLLRPEVI------SAAHWQVIGTVDDAvEQIVDWAAAGAMDGFIAAPGGSVGSLRLFLEQVVPR 412
Cdd:cd01095 273 LLLAdLLARGGLHRREVGTAREVadrlerAAGGGTVVGPEQIA-DELEEWFEAGAADGFNIMPPYLPGGLDDFVDLVVPE 351

                ....*..
gi 15599350 413 LVEKGLF 419
Cdd:cd01095 352 LQRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
47-413 1.55e-55

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 185.91  E-value: 1.55e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  47 EAAHLDFVFRPDVSSLPldvletgsGFASLDPTVLLAAVARETSRIGLVS-TVSTTFYPPYVVARQLQSLHWISDGRAGW 125
Cdd:COG2141   2 ERLGFDRVWVADHHFPP--------GGASPDPWVLLAALAAATSRIRLGTgVVVLPLRHPLVVAEQFATLDHLSGGRLDL 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 126 NIVTA--LQGHENFGLDAmpdaEQRYARAAEFTRLVHDLWDSfpreallvdresgryadvsrvRPVDHDGEFLKVKGPLN 203
Cdd:COG2141  74 GVGRGwgPDEFAAFGLDH----DERYERFEEALEVLRRLWTG---------------------EPVTFEGEFFTVEGARL 128
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 204 LPA-FGEARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAERHGRSPRDVRLLPGFSLYLAESREEA 282
Cdd:COG2141 129 VPRpVQGPHPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVIVAETDEEA 208
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 283 REIFMQTHARLDRARKFAAIRQMlgldlsdwpldrpisaadlpppvanpgsrthtdllrrlieretlrLDQLLLRPEVIS 362
Cdd:COG2141 209 RERARPYLRALLALPRGRPPEEA---------------------------------------------EEGLTVREDLLE 243
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15599350 363 AAHWQVIGTVDDAVEQIVDWAAAGAMDGFI-----AAPGGSVGSLRLFLEQVVPRL 413
Cdd:COG2141 244 LLGAALVGTPEQVAERLEELAEAAGVDEFLlqfpgLDPEDRLRSLELFAEEVLPLL 299
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
37-387 1.07e-36

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 136.34  E-value: 1.07e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350    37 DFAVDIARRSEAAHLDFVFrpdvsslpldVLETGSGFASLDPTVLLAAVARETSRIGLVSTVST-TFYPPYVVARQLQSL 115
Cdd:pfam00296  23 RYLVELARAAEELGFDGVW----------LAEHHGGPGGPDPFVVLAALAAATSRIRLGTAVVPlPTRHPAVLAEQAATL 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   116 HWISDGRAGWNIVTALQGHE--NFGLDAmpdaEQRYARAAEFTRLVHDLWDSfpreallvdresgryadvsrvRPVDHDG 193
Cdd:pfam00296  93 DHLSGGRFDLGLGTGGPAVEfrRFGVDH----DERYARLREFLEVLRRLWRG---------------------EPVDFEG 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   194 EFLKVKGPLNLPAfGEARIPLVQAGASESGRDFAASVAD-LVFAPTPDKEAALELRRDLSRRAERHGRSPRDVRLLPGFS 272
Cdd:pfam00296 148 EFFTLDGAFLLPR-PVQGIPVWVAASSPAMLELAARHADgLLLWGFAPPAAAAELIERVRAGAAEAGRDPADIRVGASLT 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   273 LYLAESREEAREIFMQTHARLDRARKFAAIRQMLGLdlsdwpldrpisaadlpppvanpGSRTHTDLLRRLIERetlrlD 352
Cdd:pfam00296 227 VIVADTEEEARAEARALIAGLPFYRMDSEGAGRLAE-----------------------AREIGEEYDAGDWAG-----A 278
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 15599350   353 QLLLRPEVISAAhwQVIGTVDDAVEQIVDWAAAGA 387
Cdd:pfam00296 279 ADAVPDELVRAF--ALVGTPEQVAERLAAYAEAGV 311
Alkanesulfonate_monoxygenase cd01094
Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the ...
17-284 7.24e-31

Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).


Pssm-ID: 238527 [Multi-domain]  Cd Length: 244  Bit Score: 118.92  E-value: 7.24e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  17 WLSGDAWRRPDSNIEGIFGSDFA--VDIARRSEAAHLDFVFRPdvsslpldvletgSGFASLDPTVLLAAVARETSRIGL 94
Cdd:cd01094   6 FIPNVSGGWSLSTPPRGRPWDFEynRQIAQAAEELGFDGALSP-------------TGSSGPDGWTVAAALAAATERLKF 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  95 VSTVSTTFYPPYVVARQLQSLHWISDGRAGWNIVTALQGHENFGLDAMPDAEQRYARAAEFTRLVHDLWdsfpreallvd 174
Cdd:cd01094  73 LVAIRPGLIAPTVAARQAATLDHISGGRLGLNVVTGGDPAELRMDGDFLDHDERYARADEFLEVLRRLW----------- 141
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350 175 resgryadvSRVRPVDHDGEFLKVKG--PLNLPAFGeARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLS 252
Cdd:cd01094 142 ---------TSDEPFDFEGKFYRFKNafLRPKPPQQ-PHPPIYFGGSSEAAIEFAARHADVYFTWGEPPAQVAEAIARVR 211
                       250       260       270
                ....*....|....*....|....*....|....
gi 15599350 253 RRAERHGRSPRdvrllPGFSLY--LAESREEARE 284
Cdd:cd01094 212 AAAAAAGRDVR-----FGIRLHviVRDTEEEAWA 240
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
77-263 9.22e-11

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 63.05  E-value: 9.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   77 DPTVLLAAVARETSRIGLVSTVSTTFYPPYVVARQLQSLHWISDGRAGWNIVTALQGHENFGLDAMPDAEQRYARAAEFT 156
Cdd:PRK00719  55 DAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLDRLSNGRLLINLVTGGDPAELAGDGLFLDHDERYEASAEFL 134
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  157 RlvhdLWdsfpREalLVDRESgryadvsrvrpVDHDGEFLKVKGP-LNLPAFGEARIPLVQAGASESGRDFAASVADLVF 235
Cdd:PRK00719 135 R----IW----RR--LLEGET-----------VDFEGKHIQVKGAkLLFPPVQQPYPPLYFGGSSDAAQELAAEQVDLYL 193
                        170       180
                 ....*....|....*....|....*...
gi 15599350  236 APTPDKEAALELRRDLSRRAERHGRSPR 263
Cdd:PRK00719 194 TWGEPPAQVKEKIEQVRAKAAAHGRKVR 221
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
22-435 4.46e-03

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 39.47  E-value: 4.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350   22 AWRRPDSNIEGIFGSDFAVDIARRSEAAHLDFVFRPDVSSLPLDVLETGSGFASLDPTVLLAAVARETSRIGLVSTVSTT 101
Cdd:COG3321  867 PFQREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAAAALLALA 946
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  102 fypPYVVARQLQSLHWISDGRAGWNIVTALQGHENFGLDAMPDAEQRYARAAEFTRLVHDLWDSFPREALLVDRESGRYA 181
Cdd:COG3321  947 ---AAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAAAAAALLA 1023
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  182 DVSRVRPVDHDGEFLKVKGPLNLPAFGEARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAERHGRS 261
Cdd:COG3321 1024 LAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALALAALA 1103
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  262 PRDVRLLPGFSLYLAESREEAREIFMQTHARLDRARKFAAIRQMLGLDLSDWPLDRPISAADLPPPVANPGSRTHTDLLR 341
Cdd:COG3321 1104 AALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALALAA 1183
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  342 RLIERETLRLDQLLLRPEVISAAHWQVIGTVDDAVEQIVDWAAAGAMDGFIAAPGGSVGSLRLFLEQVVPRLVEKGLFRE 421
Cdd:COG3321 1184 ALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAALA 1263
                        410
                 ....*....|....
gi 15599350  422 RYSATTFAGHLAEE 435
Cdd:COG3321 1264 LLAAAAGLAALAAA 1277
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
104-435 5.30e-03

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 39.47  E-value: 5.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  104 PPYVVARQLQSLHWISDGRAGWNIVTAlqghenfGLDAMPDAEQRYARAAEFTRLVHDLWDSFPREALLVDRESGRYADV 183
Cdd:COG3321  864 PTYPFQREDAAAALLAAALAAALAAAA-------ALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALA 936
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  184 SRVRPVDHDGEFLKVKGPLNLPAFGEARIPLVQAGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAERHGRSPR 263
Cdd:COG3321  937 AAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAA 1016
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  264 DVRLLPGFSLYLAESREEAREIFMQTHARLDRARKFAAIRQMLGLDLSDWPLDRPISAADLPPPVANPGSRTHTDLLRRL 343
Cdd:COG3321 1017 AAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALA 1096
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599350  344 IERETLRLDQLLLRPEVISAAHWQVIGTVDDAVEQIVDWAAAGAMDGFIAAPGGSVGSLRLFLEQVVPRLVEKGLFRERY 423
Cdd:COG3321 1097 LALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLA 1176
                        330
                 ....*....|..
gi 15599350  424 SATTFAGHLAEE 435
Cdd:COG3321 1177 LALALAAALAAA 1188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH