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Conserved domains on  [gi|15599773|ref|NP_253267|]
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hypothetical protein PA4577 [Pseudomonas aeruginosa PAO1]

Protein Classification

TraR/DksA family transcriptional regulator( domain architecture ID 10004441)

TraR/DksA family transcriptional regulator similar to Bacillus subtilis general stress protein 16O (GSP16O) and Agrobacterium tumefaciens DnaK suppressor protein

CATH:  1.10.287.3960
Gene Ontology:  GO:0008270
PubMed:  15294157|12665246|17210253|15963892|15718139|10529348|15333933
SCOP:  4003090

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DksA super family cl42442
RNA polymerase-binding transcription factor DksA [Transcription];
10-86 1.92e-05

RNA polymerase-binding transcription factor DksA [Transcription];


The actual alignment was detected with superfamily member COG1734:

Pssm-ID: 441340  Cd Length: 119  Bit Score: 40.27  E-value: 1.92e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599773  10 LETLATEYAARAAAIRRDLARSHSPDFAEQAVQRQNDEVLEGLLAEAEAGMRQVGLARLRLAEGRYGQCERCGEAIE 86
Cdd:COG1734  17 REELLEELEETEEELLSGDLSAYDPDPADRATEEEERELELALRDRERKLLRKIDAALERIEEGTYGICEECGEPIP 93
 
Name Accession Description Interval E-value
DksA COG1734
RNA polymerase-binding transcription factor DksA [Transcription];
10-86 1.92e-05

RNA polymerase-binding transcription factor DksA [Transcription];


Pssm-ID: 441340  Cd Length: 119  Bit Score: 40.27  E-value: 1.92e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599773  10 LETLATEYAARAAAIRRDLARSHSPDFAEQAVQRQNDEVLEGLLAEAEAGMRQVGLARLRLAEGRYGQCERCGEAIE 86
Cdd:COG1734  17 REELLEELEETEEELLSGDLSAYDPDPADRATEEEERELELALRDRERKLLRKIDAALERIEEGTYGICEECGEPIP 93
 
Name Accession Description Interval E-value
DksA COG1734
RNA polymerase-binding transcription factor DksA [Transcription];
10-86 1.92e-05

RNA polymerase-binding transcription factor DksA [Transcription];


Pssm-ID: 441340  Cd Length: 119  Bit Score: 40.27  E-value: 1.92e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599773  10 LETLATEYAARAAAIRRDLARSHSPDFAEQAVQRQNDEVLEGLLAEAEAGMRQVGLARLRLAEGRYGQCERCGEAIE 86
Cdd:COG1734  17 REELLEELEETEEELLSGDLSAYDPDPADRATEEEERELELALRDRERKLLRKIDAALERIEEGTYGICEECGEPIP 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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