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Conserved domains on  [gi|15599883|ref|NP_253377|]
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iron (III)-transporter permease HitB [Pseudomonas aeruginosa PAO1]

Protein Classification

ABC transporter permease( domain architecture ID 11439550)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
32-503 1.41e-99

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 310.17  E-value: 1.41e-99
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  32 YVAAKAWDAGWHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSF 111
Cdd:COG1178  30 ALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVAL 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 112 TWVSL------------------SPMYEGLGGAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTL 173
Cdd:COG1178 110 AWIALfgpngllntllralfglePPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTL 189

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 174 PLLRPTLAATGLLVALHMLVEFGALSIL--RYQTFTTAIYQEFELEFSNATAAMLSSVLLALCFLLLWLELRMRGRGRLV 251
Cdd:COG1178 190 PLLRPAIAAGALLVFLLCLADFGTPLVLggGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYA 269

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 252 RTGqGSARRAERVRLGLGKWPLQALLATLVLVGTGIPLVMLGYW-LYEGSSASFPLMEIASTLLSSLSL---------AF 321
Cdd:COG1178 270 TVG-GRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWsLTKALDDNLTLDNYRFVLLDPSLLrallnslllAL 348

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 322 GGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALSLVYFSLHYLPAT-YQTTGLLLVAYALLFMPLTQA 400
Cdd:COG1178 349 LAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLlYGTLAILVLAYVVRFLPFALR 428

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 401 PIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLGPTGLSTLATSVWVHTANL 480
Cdd:COG1178 429 SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSG 508

                       490       500
                ....*....|....*....|...
gi 15599883 481 EYAAAAPYAALLILISGLPVYLL 503
Cdd:COG1178 509 RYGEAAALALLLVLVSLLPVLLL 531
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
32-503 1.41e-99

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 310.17  E-value: 1.41e-99
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  32 YVAAKAWDAGWHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSF 111
Cdd:COG1178  30 ALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVAL 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 112 TWVSL------------------SPMYEGLGGAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTL 173
Cdd:COG1178 110 AWIALfgpngllntllralfglePPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTL 189

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 174 PLLRPTLAATGLLVALHMLVEFGALSIL--RYQTFTTAIYQEFELEFSNATAAMLSSVLLALCFLLLWLELRMRGRGRLV 251
Cdd:COG1178 190 PLLRPAIAAGALLVFLLCLADFGTPLVLggGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYA 269

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 252 RTGqGSARRAERVRLGLGKWPLQALLATLVLVGTGIPLVMLGYW-LYEGSSASFPLMEIASTLLSSLSL---------AF 321
Cdd:COG1178 270 TVG-GRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWsLTKALDDNLTLDNYRFVLLDPSLLrallnslllAL 348

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 322 GGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALSLVYFSLHYLPAT-YQTTGLLLVAYALLFMPLTQA 400
Cdd:COG1178 349 LAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLlYGTLAILVLAYVVRFLPFALR 428

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 401 PIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLGPTGLSTLATSVWVHTANL 480
Cdd:COG1178 429 SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSG 508

                       490       500
                ....*....|....*....|...
gi 15599883 481 EYAAAAPYAALLILISGLPVYLL 503
Cdd:COG1178 509 RYGEAAALALLLVLVSLLPVLLL 531
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 52-461 1.25e-17

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 85.89  E-value: 1.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883    52 PYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIP------AFVSSF-------TWVSLSP 118
Cdd:TIGR03262  50 PGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPsllpaiSLIYLFgnqgllkGLLGGFS 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   119 MYeGLGGAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLLVALHMLVEFGAL 198
Cdd:TIGR03262 130 IY-GFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVP 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   199 SIL--RYQTFTTAIYQEFELEFSNATAAMLSSVLLALCFLLLWLELRMRGRGRLVRTGQGSARRAERVRL---GLGKWPL 273
Cdd:TIGR03262 209 KVIggDYNVLATDIYKQVIGQQNFPMGAVVGVLLLLPALLAFGIDRAIQRRQRAQLSSRSVPYQPKPNRVrdaACLVYCA 288

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   274 QALLATLVLVGTGIPLVMLGYWLYEGS----SASFPLME--IASTLLSSLSLAFGGALLSCLLALPVSILVVRYPGA-LA 346
Cdd:TIGR03262 289 IISAALLAVVGMAVYASLVKFWPYNLSltlkHYNFDLMDggGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFgLL 368

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   347 RWTQRLPYLL-QALPGLVIALSLVYF---SLHYLPATYQTTGLLLVAYALLFMPLTQAPIRVALEKASPQLEEAARTLGQ 422
Cdd:TIGR03262 369 RGVLRFLAILpMAVPGLVLGLGYIFFfnaPTNPLNGLYGTMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKV 448

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 15599883   423 TPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVL 461
Cdd:TIGR03262 449 PFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFL 487
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 320-495 1.70e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.07  E-value: 1.70e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 320 AFGGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALSLVY-FSLHYLPATYQTTGLLLVAYALLF-MPL 397
Cdd:cd06261   8 ALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLlFGVLLGWGILPGLGLPALILALLLiAPF 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 398 TQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLGPTGLSTLATSVWVHT 477
Cdd:cd06261  88 ARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIF 167

                       170
                ....*....|....*...
gi 15599883 478 ANLEYAAAAPYAALLILI 495
Cdd:cd06261 168 AILFPGDLGVAAAVALIL 185
modB PRK09421
molybdate ABC transporter permease subunit;
389-459 8.70e-11

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 61.86  E-value: 8.70e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15599883  389 AYALLFMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATL 459
Cdd:PRK09421  98 AAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATI 168
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 331-462 7.26e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 7.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   331 ALPVSILV-VRYPGALARWTQRLPYLLQALPGLVIALSLVYFSLhyLPATYQTTGLLLVAYALLFMPLTQAPIRVALEKA 409
Cdd:pfam00528   1 GIPLGIIAaLRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAI--LSILGHGILPAIILALLGWAGYARLIRRAALRSL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15599883   410 SPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLG 462
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG 131
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
32-503 1.41e-99

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 310.17  E-value: 1.41e-99
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  32 YVAAKAWDAGWHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSF 111
Cdd:COG1178  30 ALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVAL 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 112 TWVSL------------------SPMYEGLGGAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTL 173
Cdd:COG1178 110 AWIALfgpngllntllralfglePPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTL 189

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 174 PLLRPTLAATGLLVALHMLVEFGALSIL--RYQTFTTAIYQEFELEFSNATAAMLSSVLLALCFLLLWLELRMRGRGRLV 251
Cdd:COG1178 190 PLLRPAIAAGALLVFLLCLADFGTPLVLggGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYA 269

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 252 RTGqGSARRAERVRLGLGKWPLQALLATLVLVGTGIPLVMLGYW-LYEGSSASFPLMEIASTLLSSLSL---------AF 321
Cdd:COG1178 270 TVG-GRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWsLTKALDDNLTLDNYRFVLLDPSLLrallnslllAL 348

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 322 GGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALSLVYFSLHYLPAT-YQTTGLLLVAYALLFMPLTQA 400
Cdd:COG1178 349 LAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLlYGTLAILVLAYVVRFLPFALR 428

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 401 PIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLGPTGLSTLATSVWVHTANL 480
Cdd:COG1178 429 SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSG 508

                       490       500
                ....*....|....*....|...
gi 15599883 481 EYAAAAPYAALLILISGLPVYLL 503
Cdd:COG1178 509 RYGEAAALALLLVLVSLLPVLLL 531
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 320-474 9.40e-20

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 89.02  E-value: 9.40e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 320 AFGGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALSL-VYFSLHYLPATYQTtglLLVAYALLFMPLT 398
Cdd:COG1177  70 ALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALlLLFSALGLSGGLWG---LILAHVVFTLPFV 146

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15599883 399 QAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLGPTGLSTLATSVW 474
Cdd:COG1177 147 VLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIY 222
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
42-247 1.47e-18

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 88.68  E-value: 1.47e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  42 WHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIP------AFVSSFTWVS 115
Cdd:COG1178 324 LDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPgivlglGLLLLFNRPL 403

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 116 LSPMYEGLGGAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLLVALHMLVEF 195
Cdd:COG1178 404 PLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKEL 483

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15599883 196 GALSILR---YQTFTTAIYQEFELEFSnATAAMLSSVLLALCFLLLWLELRMRGR 247
Cdd:COG1178 484 SATLLLRppgFETLAVLIYQLASSGRY-GEAAALALLLVLVSLLPVLLLERLLGR 537
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 52-461 1.25e-17

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 85.89  E-value: 1.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883    52 PYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIP------AFVSSF-------TWVSLSP 118
Cdd:TIGR03262  50 PGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPsllpaiSLIYLFgnqgllkGLLGGFS 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   119 MYeGLGGAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLLVALHMLVEFGAL 198
Cdd:TIGR03262 130 IY-GFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVP 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   199 SIL--RYQTFTTAIYQEFELEFSNATAAMLSSVLLALCFLLLWLELRMRGRGRLVRTGQGSARRAERVRL---GLGKWPL 273
Cdd:TIGR03262 209 KVIggDYNVLATDIYKQVIGQQNFPMGAVVGVLLLLPALLAFGIDRAIQRRQRAQLSSRSVPYQPKPNRVrdaACLVYCA 288

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   274 QALLATLVLVGTGIPLVMLGYWLYEGS----SASFPLME--IASTLLSSLSLAFGGALLSCLLALPVSILVVRYPGA-LA 346
Cdd:TIGR03262 289 IISAALLAVVGMAVYASLVKFWPYNLSltlkHYNFDLMDggGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFgLL 368

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   347 RWTQRLPYLL-QALPGLVIALSLVYF---SLHYLPATYQTTGLLLVAYALLFMPLTQAPIRVALEKASPQLEEAARTLGQ 422
Cdd:TIGR03262 369 RGVLRFLAILpMAVPGLVLGLGYIFFfnaPTNPLNGLYGTMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKV 448

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 15599883   423 TPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVL 461
Cdd:TIGR03262 449 PFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFL 487
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 58-225 6.34e-17

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 80.54  E-value: 6.34e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  58 LGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSS---FTWVSLSPMYEGLGGAILVMTMSK 134
Cdd:COG1177  63 LLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGvalLLLFSALGLSGGLWGLILAHVVFT 142

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 135 YPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLLVALHMLVEFGALSIL---RYQTFTTAIY 211
Cdd:COG1177 143 LPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLagpGVTTLPVYIY 222

                       170
                ....*....|....
gi 15599883 212 QEFELEFSNATAAM 225
Cdd:COG1177 223 SMIRRGISPEINAL 236
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 33-229 1.96e-14

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 73.25  E-value: 1.96e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  33 VAAKAWDAGWHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSFT 112
Cdd:COG0555  31 LVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIA 110

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 113 WVSL-------SPMYEGLG--------GAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLR 177
Cdd:COG0555 111 LLLLfgpngwlGQLLAPLGikvaftplGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLL 190

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15599883 178 PTLAATGLLVALHMLVEFGALSI----LRYQTFTT--AIYQEFElEFSNATAAMLSSV 229
Cdd:COG0555 191 PALLTGFALAFARALGEFGAVIFiagnLPMKTEILplLIYLKLE-EGDYAGATAIALV 247
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 47-214 7.97e-14

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 71.72  E-value: 7.97e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  47 QLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSFTWVSL---------- 116
Cdd:COG1176  58 RLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLlgrngllnsl 137

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 117 ----------SPMYEGLGGAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLL 186
Cdd:COG1176 138 llalglidepLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLL 217

                       170       180       190
                ....*....|....*....|....*....|.
gi 15599883 187 VALHMLVEFGALSIL---RYQTFTTAIYQEF 214
Cdd:COG1176 218 VFIPALGAFVTPALLgggKVLMIGNLIYQQF 248
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 320-462 3.19e-12

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 66.70  E-value: 3.19e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 320 AFGGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLV--IALSLVY---------FSLHYLPATYQTTGLLLv 388
Cdd:COG0555  63 ALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVagIALLLLFgpngwlgqlLAPLGIKVAFTPLGIVL- 141

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15599883 389 ayALLF--MPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLG 462
Cdd:COG0555 142 --AQTFvsLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIA 215
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 136-229 1.51e-11

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 63.91  E-value: 1.51e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 136 PLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLLVALHMLVEFGALSIL------RYQTFTTA 209
Cdd:COG4149 103 PLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEFGATLMFagnipgKTQTLPLA 182

                        90       100
                ....*....|....*....|
gi 15599883 210 IYQEFElEFSNATAAMLSSV 229
Cdd:COG4149 183 IYDAVE-AGDYAAAHALSLI 201
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 320-495 1.70e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.07  E-value: 1.70e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 320 AFGGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALSLVY-FSLHYLPATYQTTGLLLVAYALLF-MPL 397
Cdd:cd06261   8 ALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLlFGVLLGWGILPGLGLPALILALLLiAPF 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 398 TQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLGPTGLSTLATSVWVHT 477
Cdd:cd06261  88 ARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIF 167

                       170
                ....*....|....*...
gi 15599883 478 ANLEYAAAAPYAALLILI 495
Cdd:cd06261 168 AILFPGDLGVAAAVALIL 185
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 324-462 3.80e-11

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 62.76  E-value: 3.80e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 324 ALLSCLLALPVSILVVRYpgaLARWTQRLPYLLQALpglvIALSLVyfslhyLPAT--------------------YQTT 383
Cdd:COG4149  16 ALIATLLLLLLGIPLAWW---LARTRFRGKGLLEAL----VTLPLV------LPPTvlgfyllllfgrngplgqllEELF 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 384 GL--------LLVAYALLFMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKEL 455
Cdd:COG4149  83 GIslvftwtgAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEF 162


                ....*..
gi 15599883 456 TATLVLG 462
Cdd:COG4149 163 GATLMFA 169
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 125-229 7.22e-11

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 61.88  E-value: 7.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   125 GAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLLVALHMLVEFGALSIL--- 201
Cdd:TIGR02141  82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFagn 161

                          90       100       110
                  ....*....|....*....|....*....|.
gi 15599883   202 ---RYQTFTTAIYqeFELEFSNATAAMLSSV 229
Cdd:TIGR02141 162 ipgETQTIPLAIY--DAVESDYELAHQLSLV 190
modB PRK09421
molybdate ABC transporter permease subunit;
389-459 8.70e-11

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 61.86  E-value: 8.70e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15599883  389 AYALLFMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATL 459
Cdd:PRK09421  98 AAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATI 168
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 325-462 1.23e-10

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 61.11  E-value: 1.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   325 LLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALSLV-----------YFSLHYLPATYQTTGLLLvAYALL 393
Cdd:TIGR02141  12 LLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLiafgpngpigkLLELFGISLVFTFTGAVL-ASVIV 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15599883   394 FMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLG 462
Cdd:TIGR02141  91 SFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159
cysT CHL00187
sulfate transport protein; Provisional
 36-215 2.41e-10

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 60.80  E-value: 2.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   36 KAWDAGWHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSFTWVS 115
Cdd:CHL00187  35 KASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLAT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  116 -------LSPMYEGLG--------GAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTL 180
Cdd:CHL00187 115 vygdngwIGHLLSHLGiqivftklGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPAL 194

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 15599883  181 AATGLLVALHMLVEFGALSI----LRYQTFTTA--IYQEFE 215
Cdd:CHL00187 195 LTGLALTFSRAIGEYGSIVIissnIPFKDLVASvlIFQSLE 235
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 387-474 4.14e-10

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 60.55  E-value: 4.14e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 387 LVAYALLFMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLGPTGL 466
Cdd:COG1176 158 VIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKV 237


                ....*...
gi 15599883 467 STLATSVW 474
Cdd:COG1176 238 LMIGNLIY 245
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 58-226 6.37e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.44  E-value: 6.37e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  58 LGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSFTWVSLSPMYEGLGG-------AILVM 130
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGIlpglglpALILA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 131 TMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLLVALHMLVEFGALSIL---RYQTFT 207
Cdd:cd06261  81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLgggEAPGPG 160

                       170
                ....*....|....*....
gi 15599883 208 TAIYQEFELEFSNATAAML 226
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAA 179
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 32-229 7.62e-10

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 59.67  E-value: 7.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883    32 YVAAKAWDAGWHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSF 111
Cdd:TIGR00969  36 ALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   112 TWVSLSPMYEGLG---------------GAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLL 176
Cdd:TIGR00969 116 TLALLYGSNGWLGswlasfgiqiiftwpGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSI 195

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15599883   177 RPTLAATGLLVALHMLVEFGALSI----LRYQTFTTAI-----YQEFELEFSNATAAMLSSV 229
Cdd:TIGR00969 196 RWALLYGVVLTFARALGEFGAVVVvsgnIPGKTLTLPLlieerLEQYDYPGAYVIAAVLLLV 257
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 33-180 1.29e-07

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 53.10  E-value: 1.29e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883    33 VAAKAWDAGWHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSFT 112
Cdd:TIGR02139  27 LFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIA 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   113 WVSL-------SPMYEGLG--------GAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLR 177
Cdd:TIGR02139 107 LATLyspngwiGSFLAPLGikiaftplGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALL 186


                  ...
gi 15599883   178 PTL 180
Cdd:TIGR02139 187 PAL 189
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
47-186 2.57e-07

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 52.44  E-value: 2.57e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  47 QLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSdLPARRFWNVVLCLPFAIPAFVSSFTWVS--------LSP 118
Cdd:COG1175  67 RLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWKWlfnpdyglLNA 145

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 119 MYEGLGG--------------AILVMTMSKY-PLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAAT 183
Cdd:COG1175 146 LLGALGLepinwlgdpslalpAVIIVTVWKGtGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFV 225


                ...
gi 15599883 184 GLL 186
Cdd:COG1175 226 LVL 228
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 320-461 2.65e-07

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 51.63  E-value: 2.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   320 AFGGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALSLV-----------YFSLHYLPATYQTTGLLLv 388
Cdd:TIGR01581  30 SLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLllfgrngllgpYLEAAGIQVIFSTLGVVL- 108

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15599883   389 AYALLFMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVL 461
Cdd:TIGR01581 109 AQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMF 181
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 41-229 3.20e-07

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 51.24  E-value: 3.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883    41 GWHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSFTWVSLSPMY 120
Cdd:TIGR01581   6 GGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   121 EGLG---------------GAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGL 185
Cdd:TIGR01581  86 GLLGpyleaagiqvifstlGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLV 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 15599883   186 LVALHMLVEFGAL------SILRYQTFTTAIYqeFELEFSNATAAMLSSV 229
Cdd:TIGR01581 166 LAWARALGEFGATlmfagsIQGKTRTLPLAIY--LNIQSDNIEAAVASAL 213
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
42-198 4.13e-07

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 51.68  E-value: 4.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   42 WHSAWQLLWRPYVFRLLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSFTWVSL----- 116
Cdd:PRK10971  44 WAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLfsvng 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  117 -----------SPMYEGLGGAIlVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGL 185
Cdd:PRK10971 124 wygewlakfdiKVTYTWLGIAV-AMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVA 202

                        170
                 ....*....|...
gi 15599883  186 LVALHMLVEFGAL 198
Cdd:PRK10971 203 LSFTRSLGEFGAV 215
modB PRK09421
molybdate ABC transporter permease subunit;
107-197 1.11e-06

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 49.53  E-value: 1.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  107 FVSSFTWVslspmyeglGGAILVMTMSkYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLL 186
Cdd:PRK09421  86 ISFAFSWR---------GAALAAAVMA-FPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVL 155

                         90
                 ....*....|.
gi 15599883  187 VALHMLVEFGA 197
Cdd:PRK09421 156 AFARSLGEFGA 166
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 331-462 7.26e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 7.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883   331 ALPVSILV-VRYPGALARWTQRLPYLLQALPGLVIALSLVYFSLhyLPATYQTTGLLLVAYALLFMPLTQAPIRVALEKA 409
Cdd:pfam00528   1 GIPLGIIAaLRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAI--LSILGHGILPAIILALLGWAGYARLIRRAALRSL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15599883   410 SPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLG 462
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG 131
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 85-201 8.68e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 8.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883    85 RSDLPARRFWNVVLCLPFAIPAFVSsFTWVSLSPMYEGLGGAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSR 164
Cdd:pfam00528  15 RLDRLLRPLIDLLQALPSFVLAILL-VVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASR 93

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 15599883   165 RQVFLRVTLPLLRPTLAATGLLVALHMLVEFGALSIL 201
Cdd:pfam00528  94 WQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 149-186 1.00e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 47.45  E-value: 1.00e-05
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 15599883 149 IDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLL 186
Cdd:COG3833 169 IPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALL 206
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 147-189 2.53e-05

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 45.86  E-value: 2.53e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15599883 147 RGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLLVAL 189
Cdd:COG0395 168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFI 210
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 323-469 3.88e-05

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 45.76  E-value: 3.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  323 GALLSCLLALpvsilvVRYPGAlaRWTQRLPYLLQALPGLVIALSLVY---------------FSLHYLPATYQTT-GLL 386
Cdd:PRK15050  93 GVLLALVLAF------VPFPGA--SLVGRFIDTFVAFPSFLITLAFTFlygsagsvnialqrlFGLEAPPLDFLYSpGGV 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  387 LVAYALLFMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVLGPTGL 466
Cdd:PRK15050 165 ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDV 244


                 ...
gi 15599883  467 STL 469
Cdd:PRK15050 245 VTL 247
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
388-459 6.93e-05

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 44.74  E-value: 6.93e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15599883  388 VAYALLFMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATL 459
Cdd:PRK10971 145 VAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVI 216
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 42-189 9.67e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 44.86  E-value: 9.67e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  42 WHSAWQLLWRPyvfrlLGNTLWLMFGVTLLSALLGLALAWCVERSDLPARRFWNVVLCLPFAIP--AFVSSFTWVSLSPM 119
Cdd:COG4135 347 WQRAAPGLLEP-----LGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPqiAFLFGLQVLLLRLG 421

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15599883 120 YEGLGGA-ILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTL---AATGLLVAL 189
Cdd:COG4135 422 LDGTWLAvIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPIltaAAVGFAVSV 495
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 122-189 9.75e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 43.98  E-value: 9.75e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15599883 122 GLGGAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLaATGLLVAL 189
Cdd:COG0600 124 GEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYI-FTGLRIAL 190
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 386-461 1.08e-04

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 43.88  E-value: 1.08e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15599883   386 LLVAYALLFMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELTATLVL 461
Cdd:TIGR00969 145 MALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVV 220
cysT CHL00187
sulfate transport protein; Provisional
 320-473 2.01e-04

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 43.08  E-value: 2.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  320 AFGGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALSLV-----------YFSLHYLPATYQTTGLLLv 388
Cdd:CHL00187  64 ALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLAtvygdngwighLLSHLGIQIVFTKLGVLL- 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  389 ayALLF--MPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKEL-TATLVLGPTG 465
Cdd:CHL00187 143 --AMIFvsFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYgSIVIISSNIP 220


                 ....*...
gi 15599883  466 LSTLATSV 473
Cdd:CHL00187 221 FKDLVASV 228
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 413-474 2.37e-04

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 42.92  E-value: 2.37e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15599883  413 LEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKELT-ATLVLGPtGLSTLATSVW 474
Cdd:PRK10592 170 IEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLViASFVSGP-GATTLPMLVF 231
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 387-452 6.96e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 41.60  E-value: 6.96e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15599883  387 LVAYALLFMPLtqaPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTM 452
Cdd:PRK09497 157 LVYILLPFMVL---PLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAM 219
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 138-179 8.86e-04

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 41.23  E-value: 8.86e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 15599883 138 VYLpvaATLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPT 179
Cdd:COG4209 195 IYL---AAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPT 233
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 320-464 1.26e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 40.74  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  320 AFGGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALPGLVIALS-LVYFSLHYLPATYQTtglLLVAYALLFMPLT 398
Cdd:PRK09500  66 AVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISlLVLFMLLGIQLGFWS---LLFAHITFCLPFV 142

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599883  399 QAPIRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAGFVLVFLDTMKE-LTATLVLGPT 464
Cdd:PRK09500 143 VVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDvVVSSFVTGPS 209
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 320-443 3.45e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.36  E-value: 3.45e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 320 AFGGALLSCLLALPVSILVVRYPgALARWTQRLPYLLQALPGLVIA-LSLVYFSLHYLPAtyqttgLLLVAYALLFMPLT 398
Cdd:COG0600  70 VLLGFALAALLGVPLGLLLGLSR-LLRRLLDPLLVFLRPIPPLALApLLILWFGIGEASK------IFVIFLGAFFPILL 142

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 15599883 399 QApiRVALEKASPQLEEAARTLGQTPLMAFLRITLPIISPAIGAG 443
Cdd:COG0600 143 NT--AAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTG 185
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 33-226 5.54e-03

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 38.94  E-value: 5.54e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883  33 VAAKAWDAGWHSAWQLLWRPYVFRLLGNTLW---------LMFGVTLLsallglalaWCVERSDLPARRFWNVVLCLPFA 103
Cdd:COG4208  40 VFAEAFSKGWGAYLAALTDPDALSAIRLTLLvaaiavplnLVFGVAAA---------WAITRFEFRGKRLLITLIDLPFS 110

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599883 104 IPAFVSSFTWVSL-------SPMYEGLG--------GAILVMTMSKYPLVYLPVAATLRGIDPSLEESARMLGLSRRQVF 168
Cdd:COG4208 111 VSPVVAGLIYVLLfgaqgwfGPWLEAHDikiifavpGIVLATIFVTFPFVARELIPLMQEQGTDEEEAALTLGASGWQTF 190

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599883 169 LRVTLPLLRPTLAATGLLVALHMLVEFGALSI----LRYQTFTTAI-----YQEFELEFSNATAAML 226
Cdd:COG4208 191 WRVTLPNIKWGLLYGVILCNARAMGEFGAVSVvsghIRGETNTLPLhveilYNEYNFVAAFAVASLL 257
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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