|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
5-244 |
3.27e-141 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 395.49 E-value: 3.27e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 5 EKVYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAEG-VHQGVVAEVSPSQVWGE 83
Cdd:PRK11181 3 EIIYGIHAVQALLERAPERFIEVFVLKGREDKRLLPLINELEAQGIVIQLANRQTLDEKAEGaVHQGIIARVKPGRQLQE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 84 NMLEELLERSEgVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTL 163
Cdd:PRK11181 83 NDLPDLLASLE-QPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTM 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 164 EKLQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQ 243
Cdd:PRK11181 162 RMLQEKNIWIVGTAGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241
|
.
gi 15600129 244 R 244
Cdd:PRK11181 242 R 242
|
|
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
7-244 |
7.04e-103 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 299.42 E-value: 7.04e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 7 VYGVHAVEALLRHHpKRVKQLWLAEGRHDpRVQVLTELAAGFRIPVGQRDRRELDEWAEG-VHQGVVAEVSPSQVWGenm 85
Cdd:COG0566 29 AEGRHAVEEALKAG-REIEELLVTEGALD-RLAELLALAKAAGIPVYEVSREVLDKLSGTeTHQGVLAVVRPPEYAD--- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 86 LEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165
Cdd:COG0566 104 LEDLLAEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVRASAGALFHVPVARVTNLADALEE 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15600129 166 LQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244
Cdd:COG0566 184 LKEAGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMAGGVESLNVAVAAAILLYEAARQR 262
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
5-244 |
5.73e-102 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 295.79 E-value: 5.73e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 5 EKVYGVHAVEALLRHHpkrvKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAE-GVHQGVVAEVSPSQVWGE 83
Cdd:TIGR00186 2 EYLYGKNAVLEALLNQ----QRVFILKGLESKRLKKLIQLAKKQGINIQLVDRQKLDQLTKgGNHQGIAAKVKPILYKDL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 84 NMLEELLErSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTL 163
Cdd:TIGR00186 78 NDLYKTAK-SKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 164 EKLQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQ 243
Cdd:TIGR00186 157 TKLKESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIKRQ 236
|
.
gi 15600129 244 R 244
Cdd:TIGR00186 237 R 237
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
98-240 |
3.54e-87 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 255.00 E-value: 3.54e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTA 177
Cdd:cd18103 1 LLLILDGITDPHNLGAIIRSAEAFGVDGVIIPKRRSAPLTPTVAKASAGALEHLPIARVTNLARALEELKEAGFWIYGAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15600129 178 GEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEI 240
Cdd:cd18103 81 GEAEKSLYDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKIPMAGKVDSLNVSVAAGIILYEI 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
97-238 |
1.71e-55 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 174.26 E-value: 1.71e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 97 PLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATL-NATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVG 175
Cdd:pfam00588 1 PLVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSADPyNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15600129 176 TAGEAdKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238
Cdd:pfam00588 81 TSLGG-KSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
7-77 |
3.84e-15 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 67.95 E-value: 3.84e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15600129 7 VYGVHAVEALLRHhPKRVKQLWLAEGRHDpRVQVLTELAAGFRIPVGQRDRRELDEWAEGV-HQGVVAEVSP 77
Cdd:smart00967 1 IEGRHAVEEALKS-GRRIKELYLTEGRAE-RLKELLKLAKERGIKVIEVSKKELDKLSGTAnHQGVVAVVKP 70
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
5-244 |
3.27e-141 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 395.49 E-value: 3.27e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 5 EKVYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAEG-VHQGVVAEVSPSQVWGE 83
Cdd:PRK11181 3 EIIYGIHAVQALLERAPERFIEVFVLKGREDKRLLPLINELEAQGIVIQLANRQTLDEKAEGaVHQGIIARVKPGRQLQE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 84 NMLEELLERSEgVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTL 163
Cdd:PRK11181 83 NDLPDLLASLE-QPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTM 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 164 EKLQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQ 243
Cdd:PRK11181 162 RMLQEKNIWIVGTAGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241
|
.
gi 15600129 244 R 244
Cdd:PRK11181 242 R 242
|
|
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
7-244 |
7.04e-103 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 299.42 E-value: 7.04e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 7 VYGVHAVEALLRHHpKRVKQLWLAEGRHDpRVQVLTELAAGFRIPVGQRDRRELDEWAEG-VHQGVVAEVSPSQVWGenm 85
Cdd:COG0566 29 AEGRHAVEEALKAG-REIEELLVTEGALD-RLAELLALAKAAGIPVYEVSREVLDKLSGTeTHQGVLAVVRPPEYAD--- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 86 LEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165
Cdd:COG0566 104 LEDLLAEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVRASAGALFHVPVARVTNLADALEE 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15600129 166 LQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244
Cdd:COG0566 184 LKEAGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMAGGVESLNVAVAAAILLYEAARQR 262
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
5-244 |
5.73e-102 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 295.79 E-value: 5.73e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 5 EKVYGVHAVEALLRHHpkrvKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAE-GVHQGVVAEVSPSQVWGE 83
Cdd:TIGR00186 2 EYLYGKNAVLEALLNQ----QRVFILKGLESKRLKKLIQLAKKQGINIQLVDRQKLDQLTKgGNHQGIAAKVKPILYKDL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 84 NMLEELLErSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTL 163
Cdd:TIGR00186 78 NDLYKTAK-SKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 164 EKLQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQ 243
Cdd:TIGR00186 157 TKLKESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIKRQ 236
|
.
gi 15600129 244 R 244
Cdd:TIGR00186 237 R 237
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
98-240 |
3.54e-87 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 255.00 E-value: 3.54e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTA 177
Cdd:cd18103 1 LLLILDGITDPHNLGAIIRSAEAFGVDGVIIPKRRSAPLTPTVAKASAGALEHLPIARVTNLARALEELKEAGFWIYGAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15600129 178 GEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEI 240
Cdd:cd18103 81 GEAEKSLYDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKIPMAGKVDSLNVSVAAGIILYEI 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
97-238 |
1.71e-55 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 174.26 E-value: 1.71e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 97 PLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATL-NATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVG 175
Cdd:pfam00588 1 PLVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSADPyNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15600129 176 TAGEAdKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238
Cdd:pfam00588 81 TSLGG-KSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
98-240 |
2.51e-53 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 168.76 E-value: 2.51e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLN-ATVRkVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGT 176
Cdd:cd18095 1 LVLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNpKVVR-ASMGALFRLPIIRVDDLEELLEELKEAGYKVVAA 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15600129 177 AGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEI 240
Cdd:cd18095 80 DLDGGSSLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
98-240 |
2.04e-46 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 151.90 E-value: 2.04e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGlW-VVGT 176
Cdd:cd18105 1 LWLLLDEITDPQNLGAILRSAYFLGVDGVVVSSKNSAPLSPVVSKASAGALELMPIYSVDNLASFLKSSKENG-WkVVGT 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15600129 177 AGEADKT----------LYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGS-----VSSLNVSVATGVCLFEI 240
Cdd:cd18105 80 SAPPSASsdkktipaneLSELLLEKPTILVLGNEGRGLRTNIKNLCDYLVSIPGGRSaenpgVDSLNVSVAAGILLHSL 158
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
100-240 |
1.84e-40 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 136.20 E-value: 1.84e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 100 LALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGT-AG 178
Cdd:cd18082 2 LVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPYERVDNFEEYLKSLKEEGYPLIGLeLT 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15600129 179 EADKTLYQLDL--KGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEI 240
Cdd:cd18082 82 DGSIPLSEFKFkkPKKIALIFGNERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYEF 145
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
85-244 |
8.09e-38 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 129.89 E-value: 8.09e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 85 MLEELLE-RSEGvpLLLALDGVTDPHNLGACLRTADAAGVQAV-IVPKDKSATLNatvRKVACGAAEVIPLVAVTNLART 162
Cdd:cd18092 5 RIEEVLArRTRD--LTVVLENVHDPHNASAVLRTCDAFGVQDVhVIEPKNKFKKN---RGVAMGADKWLDVHRHDSTEEC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 163 LEKLQQRGLWVVGTA-GEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEIL 241
Cdd:cd18092 80 LAALKEQGYRIVATSlSPDAVPLDELDYTRPTALVFGNEKDGVSEEALAAADERVYIPMYGFVESLNVSVAAAIILYELQ 159
|
...
gi 15600129 242 RQR 244
Cdd:cd18092 160 RQR 162
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
98-244 |
9.11e-38 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 129.24 E-value: 9.11e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNlARTLEKLQQRGLWVVGTA 177
Cdd:cd18104 1 LILVLEGLEKPGNLGAILRSADAAGADAVILCDPKTDLFNPNVIRASLGAVFTLPVAEASS-EETLAWLKENKIRILATT 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15600129 178 GEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244
Cdd:cd18104 80 PKAEKLYYEADLRGPIAIVVGSESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLYEALRQR 146
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
98-240 |
5.40e-30 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 109.19 E-value: 5.40e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRG--LWVVG 175
Cdd:cd18097 1 LVVVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWEHFEDTLEAVRALKARGytIIALE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15600129 176 TAGEAdKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEI 240
Cdd:cd18097 81 TTENS-VPLHEARLPRPLALVLGNEVRGVSPEVLALCDAVVEIPMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
98-240 |
1.47e-27 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 102.85 E-value: 1.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQR-----GLW 172
Cdd:cd18107 1 LVVLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGSLFSLPIVRVPSNRELEDWVEARkargtPLQ 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15600129 173 VVGTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEI 240
Cdd:cd18107 81 LVGTDEHGDHQIADHDFTRPTLLLIGNETAGLSAAWRELCDETVSIPMAGSASSLNAACAASIFLYEA 148
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
6-243 |
1.16e-26 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 105.63 E-value: 1.16e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 6 KVYGVHAVEALLRHHPKRVKQLWLAEGRhDPRV-QVLTELAAGfRIPVGQRDRRELDEwAEGV--HQGVVAEVSPSQVWG 82
Cdd:PRK10864 110 RVYGENACQALFQSRPEAIVRAWFIQSV-TPRFkEALRWMAAN-RKAYHVVDEAELTK-ASGTehHGGVCFLIKKRNGTD 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 83 enmLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRkVACGAAEVIPLVAVTNLART 162
Cdd:PRK10864 187 ---VQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDAALLESGAAIR-TAEGGAEHVQPITGDSFVDV 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 163 LEKLQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILR 242
Cdd:PRK10864 263 LDDFRQAGYTIVTTSSHKGTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSIDGTGNVESLNVSVATGVLLAEWWR 342
|
.
gi 15600129 243 Q 243
Cdd:PRK10864 343 Q 343
|
|
| SpoU_sub_bind |
pfam08032 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
7-79 |
8.34e-19 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 429793 [Multi-domain] Cd Length: 74 Bit Score: 77.67 E-value: 8.34e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15600129 7 VYGVHAVEALLRHHPkRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAE-GVHQGVVAEVSPSQ 79
Cdd:pfam08032 2 IYGRHAVLEALKSGP-EIKKLYLTEGRRDPRLKELLKLAKERGIKVEEVDRKKLDKLSGtANHQGVVAEVKPYE 74
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
98-240 |
8.70e-19 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 79.89 E-value: 8.70e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVaVTNLARTLEKLQQRgLWVVGTA 177
Cdd:cd18109 1 LTLALDGIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQIH-YTDLPALLAELKKA-FPVYGAD 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15600129 178 --GEAdktLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVS-SLNVSVATGVCLFEI 240
Cdd:cd18109 79 ldGEN---LYEFTLPEKGILVMGNEGHGISPEVLKLLTHRLTIPRYGKGAeSLNVAVATAILLSEF 141
|
|
| PRK11081 |
PRK11081 |
tRNA guanosine-2'-O-methyltransferase; Provisional |
98-245 |
9.95e-16 |
|
tRNA guanosine-2'-O-methyltransferase; Provisional
Pssm-ID: 236837 [Multi-domain] Cd Length: 229 Bit Score: 73.87 E-value: 9.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAV--IVPKDKSATLNATvrkvACGAAEVIPLVAVTNLARTLEKLQQRGLWVVG 175
Cdd:PRK11081 20 LTVCMEQVHKPHNVSAIIRTADAVGVHEVhaVWPGSRMRTMGST----AAGSNSWVQVKTHRTIGDAVAHLKGQGMQILA 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15600129 176 TAGEADKTLY-QLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQRT 245
Cdd:PRK11081 96 THLSDTAVDFrEIDYTRPTCILMGQEKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQ 166
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
7-77 |
3.84e-15 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 67.95 E-value: 3.84e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15600129 7 VYGVHAVEALLRHhPKRVKQLWLAEGRHDpRVQVLTELAAGFRIPVGQRDRRELDEWAEGV-HQGVVAEVSP 77
Cdd:smart00967 1 IEGRHAVEEALKS-GRRIKELYLTEGRAE-RLKELLKLAKERGIKVIEVSKKELDKLSGTAnHQGVVAVVKP 70
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
98-240 |
1.27e-14 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 68.82 E-value: 1.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVavTNL-ARTLEKLQQRGLWVVgt 176
Cdd:cd18106 1 LTVICDNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAHFRLPIY--GNLsWDDIPNYLPDDSKVF-- 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15600129 177 agEAD-----KTLYQLDL-KGPTVLVMGAEGKGmrrLTREHCDFLAR-------LPMAGSVSSLNVSVATGVCLFEI 240
Cdd:cd18106 77 --LADnnlpvQPYDSIDYcSGPIVLVIGGETHG---VSPEAYKLAHStggsrvhIPLANGVDSLNSAVAASILLFEM 148
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
98-239 |
3.01e-14 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 67.63 E-value: 3.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 98 LLLALDGVTDPHNLGACLRTADAAGVQAV-IVPKDKsatLNATVRKvacGAAEVIPLVAVTNLARTLEKLQQRGLWVVGT 176
Cdd:cd18096 1 LYLVLHNVAKRHNIGTIVRSANAFGVKEVhLVGRRK---FNPFGAM---GTDRHVKFRHFDTLAEAKEYLKERGIRLVGV 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15600129 177 -AGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVS-SLNVSVATGVCLFE 239
Cdd:cd18096 75 eIVPGAEPIETHPFPGDTAFVLGNEGTGLSDEQLAICDGFVYIPQYGSGTaSLNVSVAASIVLHH 139
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
108-239 |
4.71e-14 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 67.17 E-value: 4.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 108 PHNLGACLRTADAAGVQAVIVPkDKSATLNATVRKVACGAAEVIPLVAVT--NLARTLEKLQQRGLWVVG---TAGEADK 182
Cdd:cd18091 11 PPNLGGLCRTCEIFGVSKLVLP-NLAVVEDKQFKALSVSAEKWLPIEEVKpeDLLPYLKEKKQEGYTIVGleqTANSVSL 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 15600129 183 TLYQLDLKgpTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFE 239
Cdd:cd18091 90 HDFQFPKK--TVLVLGNEKEGIPAELLSLLDVCVEIPQLGVIRSLNVHVSGAIAIYE 144
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
163-243 |
1.64e-12 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 62.86 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 163 LEKLQQRGLWVVGTAGEadKTLYQLDLKGPTVLVMGAEGKGMRR-LTREHCDFLARLPMAGSVSSLNVSVATGVCLFEIL 241
Cdd:cd18094 65 LEALPPGRLFLFTTKGT--KPYTDFDFKPGDYLVFGRESTGLPEeILDAFPDRRLRIPMRPKVRSLNLSNSVAIVLYEAL 142
|
..
gi 15600129 242 RQ 243
Cdd:cd18094 143 RQ 144
|
|
| SpoU-like_NHR |
cd18108 |
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ... |
99-239 |
9.03e-11 |
|
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349981 Cd Length: 144 Bit Score: 58.26 E-value: 9.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 99 LLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLnATVRKVACGAAEVIPL-VAVTNLARTLEKLQQRGLWVVGTA 177
Cdd:cd18108 2 VVVLDGVRIVGNIGAIVRTSLALGAAGIVLVDSDLATV-ADRRLLRASRGYVFSLpVVLADREEAVAFLRDNDIPLMTLD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15600129 178 GEADKTLYQL-DLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFE 239
Cdd:cd18108 81 ADGDVPVKELgDRPDRLALVFGSEKGGPSGLFEEAAAGTVSIPMSSSTESLNVSVSAGIALHE 143
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
152-243 |
9.17e-10 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 55.81 E-value: 9.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 152 PLVAVT---NLARTLEKLQQRGLWVVGTAGEadKTLYQLDLKGPTVLVMGAEGKGM-RRLTREHCDFLARLPMAGSVSSL 227
Cdd:COG0219 53 ELVDLTvhdSWEAFLEALPGGRLFLFTTKGT--KPYTDVDYQPGDVLLFGRETAGLpEEVLAAPADQRLRIPMRPGVRSL 130
|
90
....*....|....*.
gi 15600129 228 NVSVATGVCLFEILRQ 243
Cdd:COG0219 131 NLSNAVAIVLYEALRQ 146
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
108-240 |
2.19e-09 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 54.81 E-value: 2.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 108 PHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIP-LVAVTNLARTLEKLQqrglWVVGTAG-------- 178
Cdd:cd18093 11 PGNIGAVARAMKNFGLSDLRLVNPRCDDPEEAARALASGAEDVLEnAKVYDTLEEALADCD----LVVATTArprglrrp 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 179 -----EADKTLYQLDLKGPTVLVMGAEGKGmrrLTRE---HCDFLARLPMAGSVSSLNVSVATGVCLFEI 240
Cdd:cd18093 87 lltprELAELLKEHAAGGKVALVFGREDSG---LTNEelaLCDLLVTIPTNPEYPSLNLAQAVAIVLYEL 153
|
|
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
136-240 |
5.62e-04 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 40.10 E-value: 5.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 136 LNATVRKVACGAAEVIP-LVAVTNLARTLEKLQqrglWVVGTAG-------------EADKTLYQLDLKGPTVLVMGAEG 201
Cdd:COG0565 41 PDEEARAMASGADDVLEnARVVDTLEEALADCD----LVVGTTArprelrkpvltprEAAEELLARAAGGKVALVFGRER 116
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 15600129 202 KGmrrLTRE---HCDFLARLPMAGSVSSLNVSVATGVCLFEI 240
Cdd:COG0565 117 SG---LTNEelaLCDALVTIPTNPEYPSLNLAQAVQVVAYEL 155
|
|
| SpoU-like |
cd18098 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
100-238 |
8.58e-04 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 38.40 E-value: 8.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600129 100 LALDGVTDPHNLGACLRTADAAGVQAVIVpkdkSATLNATVRKVA--CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTA 177
Cdd:cd18098 3 IGIENPKTPKNVGTLWRAAGCLGASFVFT----IGARYKRRKQSTdtSKAWRHIPLFHYDDLEDLAEPLPFGAVLVAVEL 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15600129 178 GEADKTLyqLDLKGP--TVLVMGAEGKGMRRLTREHCDFLARLPMAGsvsSLNVSVATGVCLF 238
Cdd:cd18098 79 TEGATPL--PDFKHPdrAVYLLGPEDGGLPQEVLARCHHVVYLPTRG---SLNVAVAGSIVLY 136
|
|
| |
