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Conserved domains on  [gi|15600301|ref|NP_253795|]
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hypothetical protein PA5108 [Pseudomonas aeruginosa PAO1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SmpA_OmlA super family cl46449
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
 1-47 8.89e-10

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


The actual alignment was detected with superfamily member COG2913:

Pssm-ID: 480789  Cd Length: 128  Bit Score: 51.19  E-value: 8.89e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600301   1 MASFRTLAVVAF-CVVLAACSK------------INQENYSKLKAGMSKAEVEAILGKPT 47
Cdd:COG2913   1 MRKLRLLLLALLlALLLAGCSSfvykidiqqgnvVTQEDLAQLKPGMTKEQVRYLLGTPS 60
 
Name Accession Description Interval E-value
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-47 8.89e-10

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 51.19  E-value: 8.89e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600301   1 MASFRTLAVVAF-CVVLAACSK------------INQENYSKLKAGMSKAEVEAILGKPT 47
Cdd:COG2913   1 MRKLRLLLLALLlALLLAGCSSfvykidiqqgnvVTQEDLAQLKPGMTKEQVRYLLGTPS 60
SmpA_OmlA pfam04355
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
 22-47 9.52e-06

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


Pssm-ID: 461271  Cd Length: 69  Bit Score: 39.48  E-value: 9.52e-06
                         10        20
                 ....*....|....*....|....*.
gi 15600301   22 INQENYSKLKAGMSKAEVEAILGKPT 47
Cdd:pfam04355  3 VTQEDVDQLKPGMTREQVRYLLGTPS 28
PRK11251 PRK11251
osmotically-inducible lipoprotein OsmE;
3-46 9.27e-04

osmotically-inducible lipoprotein OsmE;


Pssm-ID: 183058  Cd Length: 109  Bit Score: 35.03  E-value: 9.27e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15600301    3 SFRTLAVVAFCVVLAACSKINQ-ENY------SKLKAGMSKAEVEAILGKP 46
Cdd:PRK11251   2 MAGILSAAAVLTMLAGCTAYDRnPVQfvepvvKDVKKGMTRQQVAQIAGKP 52
 
Name Accession Description Interval E-value
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-47 8.89e-10

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 51.19  E-value: 8.89e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600301   1 MASFRTLAVVAF-CVVLAACSK------------INQENYSKLKAGMSKAEVEAILGKPT 47
Cdd:COG2913   1 MRKLRLLLLALLlALLLAGCSSfvykidiqqgnvVTQEDLAQLKPGMTKEQVRYLLGTPS 60
SmpA_OmlA pfam04355
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
 22-47 9.52e-06

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


Pssm-ID: 461271  Cd Length: 69  Bit Score: 39.48  E-value: 9.52e-06
                         10        20
                 ....*....|....*....|....*.
gi 15600301   22 INQENYSKLKAGMSKAEVEAILGKPT 47
Cdd:pfam04355  3 VTQEDVDQLKPGMTREQVRYLLGTPS 28
PRK11251 PRK11251
osmotically-inducible lipoprotein OsmE;
3-46 9.27e-04

osmotically-inducible lipoprotein OsmE;


Pssm-ID: 183058  Cd Length: 109  Bit Score: 35.03  E-value: 9.27e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15600301    3 SFRTLAVVAFCVVLAACSKINQ-ENY------SKLKAGMSKAEVEAILGKP 46
Cdd:PRK11251   2 MAGILSAAAVLTMLAGCTAYDRnPVQfvepvvKDVKKGMTRQQVAQIAGKP 52
PRK11548 PRK11548
outer membrane protein assembly factor BamE;
6-46 2.97e-03

outer membrane protein assembly factor BamE;


Pssm-ID: 183190  Cd Length: 113  Bit Score: 33.97  E-value: 2.97e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15600301    6 TLAVVAFCVVLAACSK---------INQENY------SKLKAGMSKAEVEAILGKP 46
Cdd:PRK11548   7 TAAAAVLLMLTAGCSTlervvyrpdINQGNYltpndvAKIHVGMTQQQVAYTLGTP 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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