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Conserved domains on  [gi|15600586|ref|NP_254080|]
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hypothetical protein PA5393 [Pseudomonas aeruginosa PAO1]

Protein Classification

flavin-containing monooxygenase( domain architecture ID 11449697)

flavin-containing monooxygenase (FMO) catalyses the flavin-dependent oxidation of ketones and cyclic ketones to esters and lactones, by using molecular oxygen and NAD(P)H.

CATH:  3.50.50.60
Gene Ontology:  GO:0016709|GO:0004497|GO:0050660
PubMed:  20015679|33588053

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
16-437 2.97e-97

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


:

Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 297.93  E-value: 2.97e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  16 TVEKTDTLVVGAGQAGVAMSEHLSRLGVPHLVLERN-RIAEAWRSGRWDSLVANGPAWHDRFPGMEFDIDPDGFPGKDQV 94
Cdd:COG2072   3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKAdDVGGTWRDNRYPGLRLDTPSHLYSLPFFPNWSDDPDFPTGDEI 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  95 AAYFEAYAKRFDA--PIRTGVEVRKVVRNVGRPGFTVDTSAG-TIEANRVVAATGPFQRPVIPPIAPRDE-RIRQIHSAH 170
Cdd:COG2072  83 LAYLEAYADKFGLrrPIRFGTEVTSARWDEADGRWTVTTDDGeTLTARFVVVATGPLSRPKIPDIPGLEDfAGEQLHSAD 162
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 171 YYNPQQLPEGAVLVVGAGSSGVQIADELQRAGRQVYLSVGahdRPPRSYRNRDFCWWLG-VLGEWDAEVAKPGREHVTIA 249
Cdd:COG2072 163 WRNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQR---TPPWVLPRPNYDPERGrPANYLGLEAPPALNRRDARA 239
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 250 VSGARGGHTVDFRALAHqgvtlvgLTESFVDGV--ATFRPDLAENLARGDenyLALLDAADAYIARNGLdlpeepearrR 327
Cdd:COG2072 240 WLRRLLRAQVKDPELGL-------LTPDYPPGCkrPLLSTDYYEALRRGN---VELVTGGIERITEDGV----------V 299
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 328 LPDPQcvtdpileldlaEAGVGSIIWATGYAVDFGWLQV-DAFDRDGK--PRHQRG--VSSEPGVYFIGLPWLSRRgSSF 402
Cdd:COG2072 300 FADGT------------EHEVDVIVWATGFRADLPWLAPlDVRGRDGRsgPRAYLGvvVPGFPNLFFLGPNSPSGH-SSL 366
                       410       420       430
                ....*....|....*....|....*....|....*
gi 15600586 403 IWGVWHDARHVADHIAIQRKYLAYRDAAQRQEQDR 437
Cdd:COG2072 367 TLGAERQARYIARLIAHMRRRGAAAIEVRPEAEDA 401
 
Name Accession Description Interval E-value
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
16-437 2.97e-97

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 297.93  E-value: 2.97e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  16 TVEKTDTLVVGAGQAGVAMSEHLSRLGVPHLVLERN-RIAEAWRSGRWDSLVANGPAWHDRFPGMEFDIDPDGFPGKDQV 94
Cdd:COG2072   3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKAdDVGGTWRDNRYPGLRLDTPSHLYSLPFFPNWSDDPDFPTGDEI 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  95 AAYFEAYAKRFDA--PIRTGVEVRKVVRNVGRPGFTVDTSAG-TIEANRVVAATGPFQRPVIPPIAPRDE-RIRQIHSAH 170
Cdd:COG2072  83 LAYLEAYADKFGLrrPIRFGTEVTSARWDEADGRWTVTTDDGeTLTARFVVVATGPLSRPKIPDIPGLEDfAGEQLHSAD 162
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 171 YYNPQQLPEGAVLVVGAGSSGVQIADELQRAGRQVYLSVGahdRPPRSYRNRDFCWWLG-VLGEWDAEVAKPGREHVTIA 249
Cdd:COG2072 163 WRNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQR---TPPWVLPRPNYDPERGrPANYLGLEAPPALNRRDARA 239
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 250 VSGARGGHTVDFRALAHqgvtlvgLTESFVDGV--ATFRPDLAENLARGDenyLALLDAADAYIARNGLdlpeepearrR 327
Cdd:COG2072 240 WLRRLLRAQVKDPELGL-------LTPDYPPGCkrPLLSTDYYEALRRGN---VELVTGGIERITEDGV----------V 299
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 328 LPDPQcvtdpileldlaEAGVGSIIWATGYAVDFGWLQV-DAFDRDGK--PRHQRG--VSSEPGVYFIGLPWLSRRgSSF 402
Cdd:COG2072 300 FADGT------------EHEVDVIVWATGFRADLPWLAPlDVRGRDGRsgPRAYLGvvVPGFPNLFFLGPNSPSGH-SSL 366
                       410       420       430
                ....*....|....*....|....*....|....*
gi 15600586 403 IWGVWHDARHVADHIAIQRKYLAYRDAAQRQEQDR 437
Cdd:COG2072 367 TLGAERQARYIARLIAHMRRRGAAAIEVRPEAEDA 401
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
30-228 1.11e-25

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 106.15  E-value: 1.11e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586    30 AGVAMSEHLSRLGV-PHLVLERNRIAEAWRsgRW--------DSLVANGPAWHDrFPGMEFDIDPDGF-----PGKDQVA 95
Cdd:pfam13738   2 AGIGCAIALKKAGLeDYLILEKGNIGNSFY--RYpthmtffsPSFTSNGFGIPD-LNAISPGTSPAFTfnrehPSGNEYA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586    96 AYFEAYAKRFDAPIRTGVEVRKVVRNVGrpGFTVDTSAGTIEANRVVAATGPFQRPVIPPIAPRDERIRQIHSAHYYNPQ 175
Cdd:pfam13738  79 EYLRRVADHFELPINLFEEVTSVKKEDD--GFVVTTSKGTYQARYVIIATGEFDFPNKLGVPELPKHYSYVKDFHPYAGQ 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15600586   176 QlpegaVLVVGAGSSGVQIADELQRAGRQVYLsvgAHDRPPRSYRNRDFCWWL 228
Cdd:pfam13738 157 K-----VVVIGGYNSAVDAALELVRKGARVTV---LYRGSEWEDRDSDPSYSL 201
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
24-222 9.01e-07

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 51.02  E-value: 9.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586   24 VVGAGQAGVAMSEHLSRLGVPHLVLERNR-IAEAW--------------------RSGRWDSLVANGP----AWHDrFPG 78
Cdd:PLN02172  15 VIGAGAAGLVAARELRREGHTVVVFEREKqVGGLWvytpksesdplsldptrsivHSSVYESLRTNLPrecmGYRD-FPF 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586   79 M-EFD---IDPDGFPGKDQVAAYFEAYAKRFDAP--IRTGVEVRKVVRNVGRPGFTVDTSAGTIEA---NRVVAATGPFQ 149
Cdd:PLN02172  94 VpRFDdesRDSRRYPSHREVLAYLQDFAREFKIEemVRFETEVVRVEPVDGKWRVQSKNSGGFSKDeifDAVVVCNGHYT 173
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15600586  150 RPVIPPIAPRDERI-RQIHSAHYYNPQQLPEGAVLVVGAGSSGVQIADELQRAGRQVYLSVGAhdRPPRSYRNR 222
Cdd:PLN02172 174 EPNVAHIPGIKSWPgKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA--SESDTYEKL 245
 
Name Accession Description Interval E-value
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
16-437 2.97e-97

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 297.93  E-value: 2.97e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  16 TVEKTDTLVVGAGQAGVAMSEHLSRLGVPHLVLERN-RIAEAWRSGRWDSLVANGPAWHDRFPGMEFDIDPDGFPGKDQV 94
Cdd:COG2072   3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKAdDVGGTWRDNRYPGLRLDTPSHLYSLPFFPNWSDDPDFPTGDEI 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  95 AAYFEAYAKRFDA--PIRTGVEVRKVVRNVGRPGFTVDTSAG-TIEANRVVAATGPFQRPVIPPIAPRDE-RIRQIHSAH 170
Cdd:COG2072  83 LAYLEAYADKFGLrrPIRFGTEVTSARWDEADGRWTVTTDDGeTLTARFVVVATGPLSRPKIPDIPGLEDfAGEQLHSAD 162
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 171 YYNPQQLPEGAVLVVGAGSSGVQIADELQRAGRQVYLSVGahdRPPRSYRNRDFCWWLG-VLGEWDAEVAKPGREHVTIA 249
Cdd:COG2072 163 WRNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQR---TPPWVLPRPNYDPERGrPANYLGLEAPPALNRRDARA 239
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 250 VSGARGGHTVDFRALAHqgvtlvgLTESFVDGV--ATFRPDLAENLARGDenyLALLDAADAYIARNGLdlpeepearrR 327
Cdd:COG2072 240 WLRRLLRAQVKDPELGL-------LTPDYPPGCkrPLLSTDYYEALRRGN---VELVTGGIERITEDGV----------V 299
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 328 LPDPQcvtdpileldlaEAGVGSIIWATGYAVDFGWLQV-DAFDRDGK--PRHQRG--VSSEPGVYFIGLPWLSRRgSSF 402
Cdd:COG2072 300 FADGT------------EHEVDVIVWATGFRADLPWLAPlDVRGRDGRsgPRAYLGvvVPGFPNLFFLGPNSPSGH-SSL 366
                       410       420       430
                ....*....|....*....|....*....|....*
gi 15600586 403 IWGVWHDARHVADHIAIQRKYLAYRDAAQRQEQDR 437
Cdd:COG2072 367 TLGAERQARYIARLIAHMRRRGAAAIEVRPEAEDA 401
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
30-228 1.11e-25

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 106.15  E-value: 1.11e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586    30 AGVAMSEHLSRLGV-PHLVLERNRIAEAWRsgRW--------DSLVANGPAWHDrFPGMEFDIDPDGF-----PGKDQVA 95
Cdd:pfam13738   2 AGIGCAIALKKAGLeDYLILEKGNIGNSFY--RYpthmtffsPSFTSNGFGIPD-LNAISPGTSPAFTfnrehPSGNEYA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586    96 AYFEAYAKRFDAPIRTGVEVRKVVRNVGrpGFTVDTSAGTIEANRVVAATGPFQRPVIPPIAPRDERIRQIHSAHYYNPQ 175
Cdd:pfam13738  79 EYLRRVADHFELPINLFEEVTSVKKEDD--GFVVTTSKGTYQARYVIIATGEFDFPNKLGVPELPKHYSYVKDFHPYAGQ 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15600586   176 QlpegaVLVVGAGSSGVQIADELQRAGRQVYLsvgAHDRPPRSYRNRDFCWWL 228
Cdd:pfam13738 157 K-----VVVIGGYNSAVDAALELVRKGARVTV---LYRGSEWEDRDSDPSYSL 201
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
20-207 5.23e-11

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 63.22  E-value: 5.23e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  20 TDTLVVGAGQAGVAMSEHLSRLGVPHLVLERNRIaeawrSGR--WDSLVANGPAWHDRFPGMEFdidpdgfpgkdqvAAY 97
Cdd:COG0492   1 YDVVIIGAGPAGLTAAIYAARAGLKTLVIEGGEP-----GGQlaTTKEIENYPGFPEGISGPEL-------------AER 62
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  98 FEAYAKRFDAPIRTGvEVRKVVRNVGrpGFTVDTSAGT-IEANRVVAATGpfQRPVIPPIaPRDER--IRQIHSAHYYNP 174
Cdd:COG0492  63 LREQAERFGAEILLE-EVTSVDKDDG--PFRVTTDDGTeYEAKAVIIATG--AGPRKLGL-PGEEEfeGRGVSYCATCDG 136
                       170       180       190
                ....*....|....*....|....*....|...
gi 15600586 175 QQLPEGAVLVVGAGSSGVQIADELQRAGRQVYL 207
Cdd:COG0492 137 FFFRGKDVVVVGGGDSALEEALYLTKFASKVTL 169
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
20-219 1.54e-09

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 58.87  E-value: 1.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586    20 TDTLVVGAGQAGVAMSEHLSRLGVPHLVLERNRIaeawrsgrwdsLVANGPAWHDRFPGMEFdiDPDGFPGKDQVAAYFE 99
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGT-----------CPYGGCVLSKALLGAAE--APEIASLWADLYKRKE 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586   100 AYAKRFDAPIR--TGVEVRKVVRN---VGRPGfTVDTSAGTIEANRVVAATGpfQRPVIPPI----APRDERIRQIHSAH 170
Cdd:pfam07992  68 EVVKKLNNGIEvlLGTEVVSIDPGakkVVLEE-LVDGDGETITYDRLVIATG--ARPRLPPIpgveLNVGFLVRTLDSAE 144
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 15600586   171 YYNPQQLPEgAVLVVGAGSSGVQIADELQRAGRQVYLsVGAHDRPPRSY 219
Cdd:pfam07992 145 ALRLKLLPK-RVVVVGGGYIGVELAAALAKLGKEVTL-IEALDRLLRAF 191
Lys_Orn_oxgnase pfam13434
L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase; This is a family of Rossmann fold ...
98-200 4.91e-09

L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase; This is a family of Rossmann fold oxidoreductases that catalyze NADPH-dependent hydroxylation and are involved in siderophore biosynthesis. This family includes L-ornithine 5-monooxygenase, which catalyzes the hydroxylation of L-ornithine at the N5 position, and L-lysine 6-monooxygenase, which catalyzes the hydroxylation of lysine at the N6 position (EC:1.14.13.59).


Pssm-ID: 433204 [Multi-domain]  Cd Length: 338  Bit Score: 57.60  E-value: 4.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586    98 FEAY----AKRFDAPIRTGVEVRKV--VRNVGRPGFTVDTS-----AGTIEANRVVAATGPfqRPVIPPIAPRDERIrqI 166
Cdd:pfam13434  97 FNDYlqwaASHLPNRLRFGQEVESVepDAERGEPLLRVRVRdadgeETTFLARNLVLGTGG--EPYIPECARGGERV--F 172
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 15600586   167 HSAHY--YNPQQLPEGAVLVVGAGSSGVQIADELQR 200
Cdd:pfam13434 173 HSSEYleRIDRLAAKKRIAVVGSGQSAAEIFRDLLR 208
FMO-like pfam00743
Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone ...
24-208 6.46e-08

Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.


Pssm-ID: 395602 [Multi-domain]  Cd Length: 531  Bit Score: 54.78  E-value: 6.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586    24 VVGAGQAGVAMSEHLSRLGVPHLVLER-NRIAEAWR------SGR---WDSLVANGPAWHDRFPGMEFdidPDGFPG--- 90
Cdd:pfam00743   6 VIGAGVSGLASIKCCLEEGLEPTCFERsDDIGGLWRftenveEGRasiYKSVITNTSKEMSCFSDFPF---PEDYPNfmh 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586    91 KDQVAAYFEAYAKRFDapIRTGVEVRKVVRNVG-RPGFT-------VDTSAGTIEA---NRVVAATGPFQRPVIPPIA-P 158
Cdd:pfam00743  83 NSKFLEYFRMFAKEFD--LLKYIQFKTTVCSVKkRPDFStsgqwevVTEHEGKQESavfDAVMVCTGHHTNPHLPLESfP 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15600586   159 RDERIR-QI-HSAHYYNPQQLPEGAVLVVGAGSSGVQIADELQRAGRQVYLS 208
Cdd:pfam00743 161 GIEKFKgQYfHSRDYKHPEGFTGKRVLVIGIGNSGGDIAVELSHTAAQVFLS 212
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
24-222 9.01e-07

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 51.02  E-value: 9.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586   24 VVGAGQAGVAMSEHLSRLGVPHLVLERNR-IAEAW--------------------RSGRWDSLVANGP----AWHDrFPG 78
Cdd:PLN02172  15 VIGAGAAGLVAARELRREGHTVVVFEREKqVGGLWvytpksesdplsldptrsivHSSVYESLRTNLPrecmGYRD-FPF 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586   79 M-EFD---IDPDGFPGKDQVAAYFEAYAKRFDAP--IRTGVEVRKVVRNVGRPGFTVDTSAGTIEA---NRVVAATGPFQ 149
Cdd:PLN02172  94 VpRFDdesRDSRRYPSHREVLAYLQDFAREFKIEemVRFETEVVRVEPVDGKWRVQSKNSGGFSKDeifDAVVVCNGHYT 173
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15600586  150 RPVIPPIAPRDERI-RQIHSAHYYNPQQLPEGAVLVVGAGSSGVQIADELQRAGRQVYLSVGAhdRPPRSYRNR 222
Cdd:PLN02172 174 EPNVAHIPGIKSWPgKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA--SESDTYEKL 245
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
24-204 4.13e-06

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 48.80  E-value: 4.13e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  24 VVGAGQAGVAMSEHLSRLGVPHL---VLERNriAEAWR----SGRWDSLVANGPA---------------W-HDRFPGME 80
Cdd:COG4529  10 IIGGGASGTALAIHLLRRAPEPLritLFEPR--PELGRgvaySTDSPEHLLNVPAgrmsafpddpdhflrWlRENGARAA 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  81 FDIDPDGFP-----GkDQVAAYFEAYAKRFDAPIRTGVEVRKVVR-NVGRPGFTVDTSAG-TIEANRVVAATGPFQrPVI 153
Cdd:COG4529  88 PAIDPDAFVprrlfG-EYLRERLAEALARAPAGVRLRHIRAEVVDlERDDGGYRVTLADGeTLRADAVVLATGHPP-PAP 165
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15600586 154 PPIAPRDERiRQIHSAhyYNPQQL----PEGAVLVVGAGSSGVQIADELQRAGRQ 204
Cdd:COG4529 166 PPGLAAGSP-RYIADP--WPPGALaripPDARVLIIGTGLTAIDVVLSLAARGHR 217
NAD_binding_9 pfam13454
FAD-NAD(P)-binding;
24-148 1.18e-05

FAD-NAD(P)-binding;


Pssm-ID: 433222 [Multi-domain]  Cd Length: 155  Bit Score: 45.35  E-value: 1.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586    24 VVGAGQAGVAMSEHLSRLGVPH----LVLERNRIAE--AWRSGRWDSLVANGPA---------------W---HDRFPGM 79
Cdd:pfam13454   2 IVGGGPSGLALLERLLARAPKRpleiTLFDPSPPGAggVYRTDQSPEHLLNVPAsrmslfpddpphfleWlraRGALDEA 81
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15600586    80 EfDIDPDGFPGKDQVAAYFEAYAKRFDAPIRTGVEVRKV------VRNVGRPGFTVDTSAGTIEANRVVAATGPF 148
Cdd:pfam13454  82 P-GLDPDDFPPRALYGRYLRDRFEEALARAPAGVTVRVHrarvtdLRPRGDGYRVLLADGRTLAADAVVLATGHG 155
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
18-159 3.38e-05

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 45.67  E-value: 3.38e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  18 EKTDTLVVGAGQAGVA----MSEHLSRLGVPHLVLERNRIAEAWRSGRWDSLVAngpAWHDRFPGMefdIDPDGFpgkdq 93
Cdd:COG0665  85 RRTGVLYLARTEAELAalraEAEALRALGLPVELLDAAELREREPGLGSPDYAG---GLYDPDDGH---VDPAKL----- 153
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15600586  94 VAAYFEAyAKRFDAPIRTGVEVRKVVRNVGRPgFTVDTSAGTIEANRVVAATGPFQRPVIPPIAPR 159
Cdd:COG0665 154 VRALARA-ARAAGVRIREGTPVTGLEREGGRV-TGVRTERGTVRADAVVLAAGAWSARLLPMLGLR 217
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
18-240 4.04e-05

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 45.85  E-value: 4.04e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  18 EKTDTLVVGAGQAGVAMSEHLSRLGVPHLVLERNRI------------------AEAWRsgrwdsLVANGPAWHDRFPGM 79
Cdd:COG1249   2 KDYDLVVIGAGPGGYVAAIRAAQLGLKVALVEKGRLggtclnvgcipskallhaAEVAH------EARHAAEFGISAGAP 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  80 EFDidpdgFPG----KDQVAAYFEA-YAKRFDAPirtGVEVrkvVRNVGR---PGfTVDTSAG-TIEANRVVAATGpfQR 150
Cdd:COG1249  76 SVD-----WAAlmarKDKVVDRLRGgVEELLKKN---GVDV---IRGRARfvdPH-TVEVTGGeTLTADHIVIATG--SR 141
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 151 PVIPPIAPRDErIRQIHSAHYYNPQQLPEgAVLVVGAGSSGVQIADELQRAGRQVYLsVGAHDRpprsyrnrdfcwwlgV 230
Cdd:COG1249 142 PRVPPIPGLDE-VRVLTSDEALELEELPK-SLVVIGGGYIGLEFAQIFARLGSEVTL-VERGDR---------------L 203
                       250
                ....*....|
gi 15600586 231 LGEWDAEVAK 240
Cdd:COG1249 204 LPGEDPEISE 213
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
128-207 5.05e-04

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 42.21  E-value: 5.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  128 TVDTSAGTIEANRVVAATGpfQRPVIPPIaPRDERIRQIHSAHYYNPQQLP---EGAVLVVGAGSSGVQIADELQRAGRQ 204
Cdd:PRK04965  90 VVKSQGNQWQYDKLVLATG--ASAFVPPI-PGRELMLTLNSQQEYRAAETQlrdAQRVLVVGGGLIGTELAMDLCRAGKA 166

                 ...
gi 15600586  205 VYL 207
Cdd:PRK04965 167 VTL 169
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
85-302 4.31e-03

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 39.02  E-value: 4.31e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  85 PDGFPGKDQVAAYFEAYAKRFDAPIRTGVEVRKVVRNVGrpgfTVDTSAG-TIEANRVVAATGPfqRPVIPPIAPRDERi 163
Cdd:COG0446  29 GGGIKDPEDLLVRTPESFERKGIDVRTGTEVTAIDPEAK----TVTLRDGeTLSYDKLVLATGA--RPRPPPIPGLDLP- 101
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586 164 rQIHSAHYYNP-----QQLPEGA---VLVVGAGSSGVQIADELQRAGRQVYLsvgaHDRPPRsyrnrdfcwwlgVLGEWD 235
Cdd:COG0446 102 -GVFTLRTLDDadalrEALKEFKgkrAVVIGGGPIGLELAEALRKRGLKVTL----VERAPR------------LLGVLD 164
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15600586 236 AEVAKPGREHVT---IAVsgaRGGHTVD-FRALAHQGVTLVGLTESFVDGVAT---FRPD--LAEN--LARGDENYLA 302
Cdd:COG0446 165 PEMAALLEEELRehgVEL---RLGETVVaIDGDDKVAVTLTDGEEIPADLVVVapgVRPNteLAKDagLALGERGWIK 239
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
126-438 8.42e-03

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 38.70  E-value: 8.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  126 GFTVDTSA--GTIEANRVVAATGPFQRPVIPPIAPRDERIRQIHSAHYYNPQQLPEGAVLVVGAGSSGVQIADELQRAGR 203
Cdd:COG3321  844 GVPVDWSAlyPGRGRRRVPLPTYPFQREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAA 923
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  204 QVYLSVGAHDRPPRSYRNRDFCwWLGVLGEWDAEVAKPGREHVTIAVSGARGGHTVDFRALAHQGVTLVGLTESFVDGVA 283
Cdd:COG3321  924 AALAALLALVALAAAAAALLAL-AAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAL 1002
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600586  284 TFRPDLAENLARGDENYLALLDAADAYIARNGLDLPEEPEARRRLPDPQCVTDPILELDLAEAGVGSIIWATGYAVDFGW 363
Cdd:COG3321 1003 ALLAAAALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAA 1082
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15600586  364 LQVDAFDRDGKPRHQRGVSSEPGVYFIGLPWLSRRGSSFIWGVWHDARHVADHIAIQRKYLAYRDAAQRQEQDRA 438
Cdd:COG3321 1083 ALALAAALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAA 1157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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