NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15600653|ref|NP_254147|]
View 

hypothetical protein PA5460 [Pseudomonas aeruginosa PAO1]

Protein Classification

DUF1127 domain-containing protein( domain architecture ID 10009314)

DUF1127 domain-containing protein similar to Escherichia coli YjiS

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
18-70 1.01e-13

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


:

Pssm-ID: 444208  Cd Length: 61  Bit Score: 58.85  E-value: 1.01e-13
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|...
gi 15600653 18 AHPHLAALLEKLNSWRQNARSRKHLAQMSEHDLADLAISPSERYVEISKPFWR 70
Cdd:COG5457  8 RAALLARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPFWR 60
 
Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
18-70 1.01e-13

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


Pssm-ID: 444208  Cd Length: 61  Bit Score: 58.85  E-value: 1.01e-13
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|...
gi 15600653 18 AHPHLAALLEKLNSWRQNARSRKHLAQMSEHDLADLAISPSERYVEISKPFWR 70
Cdd:COG5457  8 RAALLARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPFWR 60
DUF1127 pfam06568
Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial ...
 26-61 1.08e-08

Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.


Pssm-ID: 429007  Cd Length: 36  Bit Score: 45.49  E-value: 1.08e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 15600653   26 LEKLNSWRQNARSRKHLAQMSEHDLADLAISPSERY 61
Cdd:pfam06568  1 RAALRRWRRRRRTRRELARLSDRELADIGLSRSDIR 36
 
Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
18-70 1.01e-13

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


Pssm-ID: 444208  Cd Length: 61  Bit Score: 58.85  E-value: 1.01e-13
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|...
gi 15600653 18 AHPHLAALLEKLNSWRQNARSRKHLAQMSEHDLADLAISPSERYVEISKPFWR 70
Cdd:COG5457  8 RAALLARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPFWR 60
DUF1127 pfam06568
Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial ...
 26-61 1.08e-08

Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.


Pssm-ID: 429007  Cd Length: 36  Bit Score: 45.49  E-value: 1.08e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 15600653   26 LEKLNSWRQNARSRKHLAQMSEHDLADLAISPSERY 61
Cdd:pfam06568  1 RAALRRWRRRRRTRRELARLSDRELADIGLSRSDIR 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH