|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15121 |
PRK15121 |
MDR efflux pump AcrAB transcriptional activator RobA; |
6-283 |
2.88e-45 |
|
MDR efflux pump AcrAB transcriptional activator RobA;
Pssm-ID: 185076 [Multi-domain] Cd Length: 289 Bit Score: 154.40 E-value: 2.88e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 6 ILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQ 85
Cdd:PRK15121 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFDSQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 86 QSFSREFKKLFGCSPRVYRHRDYWDLANIFPSFLIRQQQKTECRLVNFPETPIFG--NSFKYDIEVSNKSPDEevklRRH 163
Cdd:PRK15121 86 QTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPIRLGEFTLPEHEFVTLPETPLVGvtQSYSCSLEQISDFRHE----MRV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 164 HLARcmkNFKTDT-------YFVSTFEPSTKSVDLLTVetFAGT------VCKQTDSEMPKewTINRGLYASFRYEGEWE 230
Cdd:PRK15121 162 QFWR---DFLGNAptippvlYGLHETRPSQEKDDEQEV--FYTTalepdqADGYVQTGHPV--MLQGGEYVMFTYEGLGT 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1447699284 231 HYPEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVV-CEIFIPVR 283
Cdd:PRK15121 235 GLQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLrCEYLIPIR 288
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
21-104 |
1.20e-27 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 102.25 E-value: 1.20e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 21 PISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQSFSREFKKLFGCSP 100
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 1447699284 101 RVYR 104
Cdd:smart00342 81 SEYR 84
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
7-106 |
1.44e-23 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 97.54 E-value: 1.44e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQ 86
Cdd:COG4977 212 LARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSAS 291
|
90 100
....*....|....*....|
gi 1447699284 87 SFSREFKKLFGCSPRVYRHR 106
Cdd:COG4977 292 HFRRAFRRRFGVSPSAYRRR 311
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
27-106 |
2.05e-19 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 80.33 E-value: 2.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 27 IAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRA-AILVRLTAKSMLDIAISLHFDSQQSFSREFKKLFGCSPRVYRH 105
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERArRLLLEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 1447699284 106 R 106
Cdd:pfam12833 81 R 81
|
|
| adjacent_YSIRK |
TIGR04094 |
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only ... |
11-104 |
1.17e-11 |
|
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only one protein with the YSIRK variant form of signal peptide (TIGR01168) were examined for conserved genes near that one tagged protein. This protein is found adjacent to at various classes of repetitive or low-complexity YSIRK proteins (whether unique in genome or not), in a range of species (Enterococcus faecalis X98, Ruminococcus torques, Coprobacillus sp. D7, Lysinibacillus fusiformis ZC1, Streptococcus equi subsp. equi 4047, etc). The affliated YSIRK proteins include Streptococcal protective antigen (see ) and proteins with the Rib/alpha/Esp surface antigen repeat (see TIGR02331). The last quarter of this protein has an AraC family helix-turn-helix (HTH)transcriptional regulator domain.
Pssm-ID: 274977 [Multi-domain] Cd Length: 383 Bit Score: 64.31 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 11 LEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRlTAKSMLDIAISLHFDSQQSFSR 90
Cdd:TIGR04094 291 IQYINLNLYDPLKVEEIAKQFFMSESKLRKLFKKEMGISIQEYISKRKIEEAKYLLR-SQIPVSEVSNELGFYDLSHFSR 369
|
90
....*....|....
gi 1447699284 91 EFKKLFGCSPRVYR 104
Cdd:TIGR04094 370 TFKKHTGVSPKQYQ 383
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15121 |
PRK15121 |
MDR efflux pump AcrAB transcriptional activator RobA; |
6-283 |
2.88e-45 |
|
MDR efflux pump AcrAB transcriptional activator RobA;
Pssm-ID: 185076 [Multi-domain] Cd Length: 289 Bit Score: 154.40 E-value: 2.88e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 6 ILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQ 85
Cdd:PRK15121 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFDSQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 86 QSFSREFKKLFGCSPRVYRHRDYWDLANIFPSFLIRQQQKTECRLVNFPETPIFG--NSFKYDIEVSNKSPDEevklRRH 163
Cdd:PRK15121 86 QTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPIRLGEFTLPEHEFVTLPETPLVGvtQSYSCSLEQISDFRHE----MRV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 164 HLARcmkNFKTDT-------YFVSTFEPSTKSVDLLTVetFAGT------VCKQTDSEMPKewTINRGLYASFRYEGEWE 230
Cdd:PRK15121 162 QFWR---DFLGNAptippvlYGLHETRPSQEKDDEQEV--FYTTalepdqADGYVQTGHPV--MLQGGEYVMFTYEGLGT 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1447699284 231 HYPEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVV-CEIFIPVR 283
Cdd:PRK15121 235 GLQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLrCEYLIPIR 288
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
1-106 |
4.38e-34 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 119.64 E-value: 4.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 1 MIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISL 80
Cdd:PRK10219 1 MSHQKIIQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDL 80
|
90 100
....*....|....*....|....*.
gi 1447699284 81 HFDSQQSFSREFKKLFGCSPRVYRHR 106
Cdd:PRK10219 81 GYVSQQTFSRVFRRQFDRTPSDYRHR 106
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
21-104 |
1.20e-27 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 102.25 E-value: 1.20e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 21 PISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQSFSREFKKLFGCSP 100
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 1447699284 101 RVYR 104
Cdd:smart00342 81 SEYR 84
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
7-106 |
1.44e-23 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 97.54 E-value: 1.44e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQ 86
Cdd:COG4977 212 LARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSAS 291
|
90 100
....*....|....*....|
gi 1447699284 87 SFSREFKKLFGCSPRVYRHR 106
Cdd:COG4977 292 HFRRAFRRRFGVSPSAYRRR 311
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
3-106 |
3.65e-21 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 90.22 E-value: 3.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 3 RQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHF 82
Cdd:COG2207 150 LLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGF 229
|
90 100
....*....|....*....|....
gi 1447699284 83 DSQQSFSREFKKLFGCSPRVYRHR 106
Cdd:COG2207 230 SSQSHFSRAFKKRFGVTPSEYRKR 253
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
27-106 |
2.05e-19 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 80.33 E-value: 2.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 27 IAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRA-AILVRLTAKSMLDIAISLHFDSQQSFSREFKKLFGCSPRVYRH 105
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERArRLLLEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 1447699284 106 R 106
Cdd:pfam12833 81 R 81
|
|
| PRK11511 |
PRK11511 |
MDR efflux pump AcrAB transcriptional activator MarA; |
7-104 |
1.16e-18 |
|
MDR efflux pump AcrAB transcriptional activator MarA;
Pssm-ID: 236920 [Multi-domain] Cd Length: 127 Bit Score: 79.76 E-value: 1.16e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQ 86
Cdd:PRK11511 11 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQ 90
|
90
....*....|....*...
gi 1447699284 87 SFSREFKKLFGCSPRVYR 104
Cdd:PRK11511 91 TLTRTFKNYFDVPPHKYR 108
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
3-106 |
4.90e-14 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 71.24 E-value: 4.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 3 RQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRlTAKSMLDIAISLHF 82
Cdd:COG2169 82 RADLVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQ-TGLSVTDAAYAAGF 160
|
90 100
....*....|....*....|....
gi 1447699284 83 DSQQSFSREFKKLFGCSPRVYRHR 106
Cdd:COG2169 161 GSLSRFYEAFKKLLGMTPSAYRRG 184
|
|
| AraC_E_bind |
smart00871 |
Bacterial transcription activator, effector binding domain; This domain is found in the ... |
127-283 |
4.77e-13 |
|
Bacterial transcription activator, effector binding domain; This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Pssm-ID: 214874 [Multi-domain] Cd Length: 158 Bit Score: 65.58 E-value: 4.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 127 ECRLVNFPETPIFGNSFKYDIEvSNKSPDEEVKLRRHHLARCMKNFKTD--TYFVSTFEPSTKSVDLLTVetFAGTVCKQ 204
Cdd:smart00871 1 EVRIVELPAFKVAGLRHRGPNE-DEKIPELWQRLIQWAKELGLLPVGNSgePYGVYYDDPDDTPDGEFRY--DAGVEVSD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 205 TD--SEMPKEWTINRGLYASFRYEGE-WEHYPEWARNLYLMELPARGLARVNGSDIERFYYNeDFVEKDSNDVVCEIFIP 281
Cdd:smart00871 78 EVeaPEGVETKTIPAGKYAVFTHKGGsYDEIQEAWEAIYGEWLPNSGYELRDAGPDFEVYLN-DPPDTDPEELVTEIYIP 156
|
..
gi 1447699284 282 VR 283
Cdd:smart00871 157 VK 158
|
|
| GyrI-like |
pfam06445 |
GyrI-like small molecule binding domain; This family contains the small molecule binding ... |
127-282 |
3.11e-12 |
|
GyrI-like small molecule binding domain; This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.
Pssm-ID: 428947 Cd Length: 153 Bit Score: 63.20 E-value: 3.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 127 ECRLVNFPETPIFGNSFKYDIEVSN-KSPDEEVKLRRHHLARCMKNFKTdtYFVSTFEPSTKSVDLLTVETFAGTVCKQT 205
Cdd:pfam06445 1 EVEIVELPAFRVAGLRHRGPYNEEGiGALWEELCAWASENGLSPAPSPL--IGVSYDDPEVTEDEELRYDAGVAVPIPVE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447699284 206 DSEMPKEWTINRGLYASFRYEGEWEHYPEWARNLYLMELPARGLARVNGSDIERfYYNeDFVEKDSNDVVCEIFIPV 282
Cdd:pfam06445 79 GPEGVEELELPGGEYAVFRHKGPYDDLQETYAKIYGEWLPESGYERRDGPSFEI-YLN-DPREVPEEELKTEIYIPV 153
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
7-106 |
7.11e-12 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 64.60 E-value: 7.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQ 86
Cdd:PRK09393 220 LGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSEE 299
|
90 100
....*....|....*....|
gi 1447699284 87 SFSREFKKLFGCSPRVYRHR 106
Cdd:PRK09393 300 SLRHHFRRRAATSPAAYRKR 319
|
|
| adjacent_YSIRK |
TIGR04094 |
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only ... |
11-104 |
1.17e-11 |
|
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only one protein with the YSIRK variant form of signal peptide (TIGR01168) were examined for conserved genes near that one tagged protein. This protein is found adjacent to at various classes of repetitive or low-complexity YSIRK proteins (whether unique in genome or not), in a range of species (Enterococcus faecalis X98, Ruminococcus torques, Coprobacillus sp. D7, Lysinibacillus fusiformis ZC1, Streptococcus equi subsp. equi 4047, etc). The affliated YSIRK proteins include Streptococcal protective antigen (see ) and proteins with the Rib/alpha/Esp surface antigen repeat (see TIGR02331). The last quarter of this protein has an AraC family helix-turn-helix (HTH)transcriptional regulator domain.
Pssm-ID: 274977 [Multi-domain] Cd Length: 383 Bit Score: 64.31 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 11 LEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRlTAKSMLDIAISLHFDSQQSFSR 90
Cdd:TIGR04094 291 IQYINLNLYDPLKVEEIAKQFFMSESKLRKLFKKEMGISIQEYISKRKIEEAKYLLR-SQIPVSEVSNELGFYDLSHFSR 369
|
90
....*....|....
gi 1447699284 91 EFKKLFGCSPRVYR 104
Cdd:TIGR04094 370 TFKKHTGVSPKQYQ 383
|
|
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
4-104 |
4.03e-10 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 59.45 E-value: 4.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 4 QKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFD 83
Cdd:PRK10371 190 QFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFR 269
|
90 100
....*....|....*....|.
gi 1447699284 84 SQQSFSREFKKLFGCSPRVYR 104
Cdd:PRK10371 270 SSSRFYSTFGKYVGMSPQQYR 290
|
|
| PRK13501 |
PRK13501 |
HTH-type transcriptional activator RhaR; |
7-106 |
2.17e-09 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 57.22 E-value: 2.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQ 86
Cdd:PRK13501 178 LDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSN 257
|
90 100
....*....|....*....|
gi 1447699284 87 SFSREFKKLFGCSPRVYRHR 106
Cdd:PRK13501 258 YFSAVFTREAGMTPRDYRQR 277
|
|
| SbmC |
COG3449 |
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair]; |
18-284 |
3.10e-08 |
|
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];
Pssm-ID: 442672 [Multi-domain] Cd Length: 286 Bit Score: 53.71 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 18 LEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQSFSREFKKLFG 97
Cdd:COG3449 26 LDLLLLALLLAFAFHFFFFHRRRRFRALIGRRARLLLRRRLLAALALLLLSSSAIIAAAAAASGYSSSASFRRFFRAFGG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 98 CSPRVYRHRDYWDLANiFPSFLIRQQQKTECRLVNFPETPIFGnsfkydieVSNKSPDEEV-----KLRRHHLARCMKNF 172
Cdd:COG3449 106 SSRSRRRRAKAKLLAL-PPLDPPRLEPMMDVEIKELPPRRVAY--------LRHRGPYEEIgeafeRLIAWAKARGLLPP 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 173 KTDTYFVSTFEPSTKSVDLLTVETfAGTVCKQ-TDSEMPKEWTINRGLYASFRYEGEWEHYPEWARNLYLMELPARGLAR 251
Cdd:COG3449 177 DSRTIGIYYDDPDITPPEKLRYDA-CVTVPEDvALPGGVEVKTIPGGRYAVLRHKGPYEDLGAAWDWLYGEWLPASGYEL 255
|
250 260 270
....*....|....*....|....*....|...
gi 1447699284 252 VNGSDIERfYYNeDFVEKDSNDVVCEIFIPVRP 284
Cdd:COG3449 256 RDRPCFEI-YLN-DPRETPEGELITDIYLPLKP 286
|
|
| PRK13502 |
PRK13502 |
HTH-type transcriptional activator RhaR; |
3-105 |
1.81e-07 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184093 [Multi-domain] Cd Length: 282 Bit Score: 51.21 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 3 RQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHF 82
Cdd:PRK13502 174 RETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGF 253
|
90 100
....*....|....*....|...
gi 1447699284 83 DSQQSFSREFKKLFGCSPRVYRH 105
Cdd:PRK13502 254 EDSNYFSVVFTRETGMTPSQWRH 276
|
|
| YdeE |
COG3708 |
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription] ... |
197-283 |
4.14e-07 |
|
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription];
Pssm-ID: 442922 Cd Length: 157 Bit Score: 48.86 E-value: 4.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 197 FAGTVCKQtDSEMPKE---WTINRGLYASFRYEGeweHYPE-----WARnLYLMELPARGLARVNGSDIERFYYNEDfve 268
Cdd:COG3708 72 LAGVEVSS-FDEVPEGletLEIPAGTYAVFTHKG---PMPEalqetWQY-IYSEWLPSSGYERADGPDFEVYDERDD--- 143
|
90
....*....|....*
gi 1447699284 269 kDSNDVVCEIFIPVR 283
Cdd:COG3708 144 -PSPDSEVEIWIPIK 157
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
3-106 |
4.55e-07 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 50.03 E-value: 4.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 3 RQKILQQLLEWIECNLEHP-ISIEDIAQKSGYSRRNiqlLFRNFMHVPL--GEYIRKRRL--CRAAILVRLTAKSMLDIA 77
Cdd:PRK09685 195 RERQFQKVVALIDQSIQEEiLRPEWIAGELGISVRS---LYRLFAEQGLvvAQYIRNRRLdrCADDLRPAADDEKITSIA 271
|
90 100
....*....|....*....|....*....
gi 1447699284 78 ISLHFDSQQSFSREFKKLFGCSPRVYRHR 106
Cdd:PRK09685 272 YKWGFSDSSHFSTAFKQRFGVSPGEYRRK 300
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
7-105 |
5.34e-07 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 49.68 E-value: 5.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQ 86
Cdd:PRK13503 173 LNQLLAWLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGFGDSN 252
|
90
....*....|....*....
gi 1447699284 87 SFSREFKKLFGCSPRVYRH 105
Cdd:PRK13503 253 HFSTLFRREFSWSPRDIRQ 271
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
17-106 |
1.99e-06 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 48.05 E-value: 1.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 17 NLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQSFSREFKKLF 96
Cdd:PRK10572 195 HLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCT 274
|
90
....*....|
gi 1447699284 97 GCSPRVYRHR 106
Cdd:PRK10572 275 GASPSEFRAR 284
|
|
| PRK13500 |
PRK13500 |
HTH-type transcriptional activator RhaR; |
4-105 |
4.03e-06 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184091 [Multi-domain] Cd Length: 312 Bit Score: 47.40 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699284 4 QKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFD 83
Cdd:PRK13500 205 ETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFE 284
|
90 100
....*....|....*....|..
gi 1447699284 84 SQQSFSREFKKLFGCSPRVYRH 105
Cdd:PRK13500 285 DSNYFSVVFTRETGMTPSQWRH 306
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
69-105 |
3.81e-05 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 40.21 E-value: 3.81e-05
10 20 30
....*....|....*....|....*....|....*..
gi 1447699284 69 TAKSMLDIAISLHFdSQQSFSREFKKLFGCSPRVYRH 105
Cdd:pfam00165 7 TNLTIADIADELGF-SRSYFSRLFKKYTGVTPSQYRH 42
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
14-55 |
4.84e-03 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 34.05 E-value: 4.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1447699284 14 IECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIR 55
Cdd:pfam00165 1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
|
|
| |
