|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
93-604 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 650.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTtvrkennyGLSITFRDA 172
Cdd:PRK05812 24 ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYG--------GVEITFRDA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 173 KARDEAIAYLSKRhpdlvissqgsnqlrAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGI 252
Cdd:PRK05812 96 EDRDKAIALLRKL---------------SSLTEAELKEITEEALEQAIEIIRNRVNELGVAEPVIQRQGADRIVVELPGV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 253 QDTARAKEILGATATLEFRLVntnvdqaaaasgrvpgdsevkqtregqpvvlykRVILTGDHITDSTSSQDEYNQPQVNI 332
Cdd:PRK05812 161 QDTARAKEILGKTATLEFRLV---------------------------------PVILTGDDITDASASFDQQGQPVVNI 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 333 SLDSAGGNIMSNFTKDNIGKPMATLFveykdsgkkdangravlvkQEEVINIANIQSRL-GNSFRITGINNPNEARQLSL 411
Cdd:PRK05812 208 TLDSEGAKKFADITKANIGKRMAIVL-------------------DGEVISAPVIQSAItGGSAQITGNFTAEEARDLAL 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 412 LLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATL 491
Cdd:PRK05812 269 LLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLL-GATL 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 492 SMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITT 571
Cdd:PRK05812 348 TLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTL 427
|
490 500 510
....*....|....*....|....*....|....
gi 1447699308 572 GIGVATSMFTAIVGTRAIVNLLYG-GKRVKKLSI 604
Cdd:PRK05812 428 GIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
88-604 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 550.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 88 YVVALNLapatprWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKlqeqnidslrsdlrekgipyttvrkennyglsi 167
Cdd:COG0342 15 LVVALSL------VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAALDE--------------------------------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 168 tfrdakardeaiaylskrhpdlvissqgsnqlravmSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVV 247
Cdd:COG0342 56 ------------------------------------DGDGIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVV 99
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 248 ELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAasgrVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD-EYN 326
Cdd:COG0342 100 ELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRDGQPYLLLGPVVLTGDDLTDASAGFDqQTG 175
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 327 QPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEykdsgkkdangravlvkqeEVINIANIQSRL-GNSFRITGINNPNE 405
Cdd:COG0342 176 QPVVSFTLDSEGAKKFADATRENVGKPLAIVLDG-------------------EVISAPVIQEPItGGSAQITGSFTVEE 236
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 406 ARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSL 485
Cdd:COG0342 237 AQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSL 316
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 486 LpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIK 565
Cdd:COG0342 317 L-GATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVK 395
|
490 500 510
....*....|....*....|....*....|....*....
gi 1447699308 566 GFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604
Cdd:COG0342 396 GFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
112-590 |
7.37e-179 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 511.45 E-value: 7.37e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 112 LGLDLRGGVHFLMEVDMDTALgklqeqnidslrsdlrekgipyttvrkennyglsitfrdakardeaiaylskrhpdlvi 191
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAV----------------------------------------------------------- 21
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 192 ssqgsnqlRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFR 271
Cdd:TIGR01129 22 --------VLKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFR 93
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 272 LVNTN-VDQAAAASGRVPGDSEVKQTREGQP--VVLYKRVILTGDHITDSTSSQDEYN-QPQVNISLDSAGGNIMSNFTK 347
Cdd:TIGR01129 94 LVDDEsTSPDDALAGNVPAGSELLDSRSGDPkyYLLKKSPVLTGDHITDATSSVDQRSgQPVVSFSLDSEGARIFGDFTQ 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 348 DNIGKPMATLFVEYkdsgkkdangravlvkqeeVINIANIQSRL-GNSFRITGINNPNEARQLSLLLRAGALIAPIQIVE 426
Cdd:TIGR01129 174 ANIGKRLAIVLDNK-------------------VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQILE 234
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 427 ERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVA 506
Cdd:TIGR01129 235 ERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIGMA 313
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 507 VDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGT 586
Cdd:TIGR01129 314 VDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFT 393
|
....
gi 1447699308 587 RAIV 590
Cdd:TIGR01129 394 RLLL 397
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
1-92 |
2.96e-38 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 136.49 E-value: 2.96e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 1 MLIVVIVIGLLYALPNLFGEDPAVQITGARG-VAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREA 79
Cdd:pfam13721 11 LILVVLLIGLLYALPNLYGEDPAVQISAARGgAKVDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDSTDDQLKAKDV 90
|
90
....*....|...
gi 1447699308 80 LMGVMGDKYVVAL 92
Cdd:pfam13721 91 LQRALGDDYVVAL 103
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
451-601 |
8.70e-13 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 71.73 E-value: 8.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 451 LVSILFMIIFYKKFGLIATsaLIANLILIVGIMSL-LPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELS-NGRTVQ 528
Cdd:NF037998 456 IAIMIYLLFAYRLLGLFAI--IIALTSISLTLYSPtWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYkNKRSIE 533
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1447699308 529 QAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601
Cdd:NF037998 534 ESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKK 606
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
422-582 |
1.55e-12 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 66.48 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 422 IQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFM-IIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIV 500
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVgLRFEWRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 501 LTLAVAVDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAIT----TGIG 574
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLrkKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLAllvgVIVG 171
|
....*...
gi 1447699308 575 VATSMFTA 582
Cdd:pfam02355 172 TYSSIFIA 179
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
2-113 |
3.34e-05 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 43.84 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 2 LIVVIVIGLLYALPNLFGEDPAVQITgargvaASEQTL-----IQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRA 76
Cdd:PRK10629 16 AVLLLLAALLLAWSALRQQESTLAIR------AVHQGAslpdgFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAA 89
|
90 100 110
....*....|....*....|....*....|....*...
gi 1447699308 77 REALMGVMGDKYVVAL-NLAPATPRWLAAIHAEPMKLG 113
Cdd:PRK10629 90 KEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
93-604 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 650.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTtvrkennyGLSITFRDA 172
Cdd:PRK05812 24 ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYG--------GVEITFRDA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 173 KARDEAIAYLSKRhpdlvissqgsnqlrAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGI 252
Cdd:PRK05812 96 EDRDKAIALLRKL---------------SSLTEAELKEITEEALEQAIEIIRNRVNELGVAEPVIQRQGADRIVVELPGV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 253 QDTARAKEILGATATLEFRLVntnvdqaaaasgrvpgdsevkqtregqpvvlykRVILTGDHITDSTSSQDEYNQPQVNI 332
Cdd:PRK05812 161 QDTARAKEILGKTATLEFRLV---------------------------------PVILTGDDITDASASFDQQGQPVVNI 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 333 SLDSAGGNIMSNFTKDNIGKPMATLFveykdsgkkdangravlvkQEEVINIANIQSRL-GNSFRITGINNPNEARQLSL 411
Cdd:PRK05812 208 TLDSEGAKKFADITKANIGKRMAIVL-------------------DGEVISAPVIQSAItGGSAQITGNFTAEEARDLAL 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 412 LLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATL 491
Cdd:PRK05812 269 LLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLL-GATL 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 492 SMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITT 571
Cdd:PRK05812 348 TLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTL 427
|
490 500 510
....*....|....*....|....*....|....
gi 1447699308 572 GIGVATSMFTAIVGTRAIVNLLYG-GKRVKKLSI 604
Cdd:PRK05812 428 GIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
1-595 |
0e+00 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 610.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 1 MLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLiqvQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREAL 80
Cdd:PRK12933 20 VLIVTIIILLLSAIPTWYGEDAAVQVSAKAGLLLNVVEL---RQLLQAQGINVKRIDQKEGKTLIVLDDDSQQSQAKTLL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 81 MGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKE 160
Cdd:PRK12933 97 SSMVKEPKELTLSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQRIRGVSVRLD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 161 NNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQ 240
Cdd:PRK12933 177 DSDQLAVTTPDNDARSAVRQFIQQNYPGWQVTNSDDRGLQLKLSQQEKTKFRNLTVQQNLQIMRSRIEELGITEALVQRQ 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 241 GADRIVVELPGIQDTARAKEILGATATLEFrlvnTNVDQAAAASgrvpgdSEVKQTREGQPVVLYKRVILTGDHITDSTS 320
Cdd:PRK12933 257 GEHRIRIELPGVQDPAAAKNVIGATASLAF----YEVKESGSVN------AKVLKDKNGRPVYVARRPVLGGEHIVDARA 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 321 SQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKdsgkKDANGRAVlvKQEEVINIANIQSRLGNSFRITGI 400
Cdd:PRK12933 327 SLGEMGMAEVNISLDRAGGKKMSDFSRDNIGKPMATSYSEYS----RDEQGKTK--QSEEVISVATIQSQLGDRFRITGA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 401 NNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIV 480
Cdd:PRK12933 401 GSYQEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLF 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 481 GIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560
Cdd:PRK12933 481 GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIG 560
|
570 580 590
....*....|....*....|....*....|....*
gi 1447699308 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYG 595
Cdd:PRK12933 561 NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYG 595
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
88-604 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 550.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 88 YVVALNLapatprWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKlqeqnidslrsdlrekgipyttvrkennyglsi 167
Cdd:COG0342 15 LVVALSL------VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAALDE--------------------------------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 168 tfrdakardeaiaylskrhpdlvissqgsnqlravmSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVV 247
Cdd:COG0342 56 ------------------------------------DGDGIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVV 99
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 248 ELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAasgrVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD-EYN 326
Cdd:COG0342 100 ELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRDGQPYLLLGPVVLTGDDLTDASAGFDqQTG 175
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 327 QPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEykdsgkkdangravlvkqeEVINIANIQSRL-GNSFRITGINNPNE 405
Cdd:COG0342 176 QPVVSFTLDSEGAKKFADATRENVGKPLAIVLDG-------------------EVISAPVIQEPItGGSAQITGSFTVEE 236
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 406 ARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSL 485
Cdd:COG0342 237 AQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSL 316
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 486 LpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIK 565
Cdd:COG0342 317 L-GATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVK 395
|
490 500 510
....*....|....*....|....*....|....*....
gi 1447699308 566 GFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604
Cdd:COG0342 396 GFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
112-590 |
7.37e-179 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 511.45 E-value: 7.37e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 112 LGLDLRGGVHFLMEVDMDTALgklqeqnidslrsdlrekgipyttvrkennyglsitfrdakardeaiaylskrhpdlvi 191
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAV----------------------------------------------------------- 21
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 192 ssqgsnqlRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFR 271
Cdd:TIGR01129 22 --------VLKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFR 93
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 272 LVNTN-VDQAAAASGRVPGDSEVKQTREGQP--VVLYKRVILTGDHITDSTSSQDEYN-QPQVNISLDSAGGNIMSNFTK 347
Cdd:TIGR01129 94 LVDDEsTSPDDALAGNVPAGSELLDSRSGDPkyYLLKKSPVLTGDHITDATSSVDQRSgQPVVSFSLDSEGARIFGDFTQ 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 348 DNIGKPMATLFVEYkdsgkkdangravlvkqeeVINIANIQSRL-GNSFRITGINNPNEARQLSLLLRAGALIAPIQIVE 426
Cdd:TIGR01129 174 ANIGKRLAIVLDNK-------------------VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQILE 234
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 427 ERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVA 506
Cdd:TIGR01129 235 ERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIGMA 313
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 507 VDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGT 586
Cdd:TIGR01129 314 VDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFT 393
|
....
gi 1447699308 587 RAIV 590
Cdd:TIGR01129 394 RLLL 397
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
215-593 |
6.68e-123 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 380.35 E-value: 6.68e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 215 AVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPgdsevk 294
Cdd:PRK13024 60 ALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVTDPPPPGVGGPVVGP------ 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 295 qtREGQPVVLYKRVILTGDHITDSTSSQDEY--NQPQVNISLDSAGGNIMSNFTKDNIGKPmatlfveykdsgkkDANGR 372
Cdd:PRK13024 134 --DEGKDTAVLNPVLLSGDDLTDAGAKFDQDqtNRPSVSLKLKSEGAKKWAKVTEKNSKKG--------------PPNNR 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 373 AVLVKQEEVINIANIQS-RLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLL 451
Cdd:PRK13024 198 IAIVLDPKVISAPTVNQpINGGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFA 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 452 VSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAI 531
Cdd:PRK13024 278 LIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSL-GAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAF 356
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447699308 532 DEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593
Cdd:PRK13024 357 KKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLELL 418
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
99-602 |
7.30e-116 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 364.81 E-value: 7.30e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 99 PRWLAAihaEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVrKENNYGLSITFRDAKARDEA 178
Cdd:PRK14726 37 PSWLPH---RQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIRYTGL-TGNGQTVQVRITDPAQTQAA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 179 IAYL-------------SKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRI 245
Cdd:PRK14726 113 VDALkpltapvsagglgGSSIQELTLQEGGEGQLRLQLTDAGIDYRVSSALTQSIEVVRRRVAELGTTEPLIRRQGDDRI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 246 VVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPV--VLYKRVILTGDHITDSTSSQD 323
Cdd:PRK14726 193 VVQVPGLVDPQRLKNLLNQPAKLSFRLVDSSMPAQEALNGRPPATSEVLYSLDDPPVpyLVERRAFVSGENLVDAQPVFD 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 324 EYNQ-PQVNISLDSAGGNIMSNFTKDNIGKPMAtlfveykdsgkkdangravLVKQEEVINIANIQSR-LGNSFRITGIN 401
Cdd:PRK14726 273 PQTNePVVTFRLDAEGTQRFAQATQQNVGKHFA-------------------IVLDGQVISAPVIDEAiTGGEGRISGNF 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 402 NPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVG 481
Cdd:PRK14726 334 SEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLIIA 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 482 IMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGT 561
Cdd:PRK14726 414 VLSLL-GATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGS 492
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1447699308 562 GAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKL 602
Cdd:PRK14726 493 GAVRGFAVTLAVGILTTVFTAFTLTRSLVAVWLRRRRPKHL 533
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
216-590 |
3.56e-57 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 205.24 E-value: 3.56e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 216 VQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQ 295
Cdd:PRK13023 69 LETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADSEIVY 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 296 TREGQPV--VLYKRVILTGDHITDSTSS-QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMAtlfveykdsgkkdangr 372
Cdd:PRK13023 149 SFDDPPVgyLLKKTPILTGHDITDAKASiSADDGQPVITLTLDDNGRRRLADLTAQGNENSFA----------------- 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 373 avLVKQEEVINIANIQSRLG-NSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLL 451
Cdd:PRK13023 212 --IVVDNQVVSAPTVSGPLDtSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAAL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 452 VSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAI 531
Cdd:PRK13023 290 VVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI-GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAM 368
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1447699308 532 DEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIV 590
Cdd:PRK13023 369 ESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLI 427
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
428-583 |
3.44e-53 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 180.15 E-value: 3.44e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 428 RTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIAN-LILIVGIMSLLpGATLSMPGIAGIVLTLAVA 506
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLF-GATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1447699308 507 VDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAI 583
Cdd:TIGR00916 114 VDDTVVIFDRIREELrkYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
405-587 |
2.95e-41 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 160.79 E-value: 2.95e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 405 EARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMS 484
Cdd:PRK12911 874 EVHRLATDLKSGAMSFVPEVLSEEVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQ 953
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 485 LLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAI 564
Cdd:PRK12911 954 YL-DAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPI 1032
|
170 180
....*....|....*....|...
gi 1447699308 565 KGFAITTGIGVATSMFTAIVGTR 587
Cdd:PRK12911 1033 KGFALTLIIGIFSSMFTALFMTK 1055
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
1-92 |
2.96e-38 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 136.49 E-value: 2.96e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 1 MLIVVIVIGLLYALPNLFGEDPAVQITGARG-VAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREA 79
Cdd:pfam13721 11 LILVVLLIGLLYALPNLYGEDPAVQISAARGgAKVDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDSTDDQLKAKDV 90
|
90
....*....|...
gi 1447699308 80 LMGVMGDKYVVAL 92
Cdd:pfam13721 91 LQRALGDDYVVAL 103
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
222-575 |
3.12e-28 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 117.28 E-value: 3.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 222 ILRNRVNQLGVAEPVVQRQGADRIVVELPGIqDTARAKEILGATATLEFRLVNTNVDQaaaasgrvpgdsevkqtregqp 301
Cdd:PRK08343 71 ILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIEKQGVFEARIQTPGNNN---------------------- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 302 vvlykRVILTGDHIT--DSTSSQDEYNQPQVNISLDSAGGNimsNFTKDNIGKPMATLFVEYKdsgkkdangrAVLVKQE 379
Cdd:PRK08343 128 -----ETVLTGDDIEsvGSPSQDPSGGAWGVPFTLSEDGAE---KFAEVAKGKGATDDPSGHP----------LDMYLDG 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 380 EVINIANIQSRLGNSFR-----------ITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA 448
Cdd:PRK08343 190 ELIYAAPLSPDLASGLAsgpvvitvgstGTTEEAKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQFKKGSLIAGLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 449 GLLVsILFMIIF-YKK----FGLIATSalIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLI-NERIKEELS 522
Cdd:PRK08343 270 ALLA-VALVVFLrYREpriaLPMVITS--LSEVIIILGFAALI-GWQLDLASIAGIIAVIGTGVDDLIIItDEVLHEGKV 345
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1447699308 523 NGRTVQQAideGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGV 575
Cdd:PRK08343 346 PSRKVFLS---RIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGV 395
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
451-601 |
8.70e-13 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 71.73 E-value: 8.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 451 LVSILFMIIFYKKFGLIATsaLIANLILIVGIMSL-LPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELS-NGRTVQ 528
Cdd:NF037998 456 IAIMIYLLFAYRLLGLFAI--IIALTSISLTLYSPtWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYkNKRSIE 533
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1447699308 529 QAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601
Cdd:NF037998 534 ESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKK 606
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
447-601 |
1.25e-12 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 71.04 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 447 LAGLLVSILFMIIFYKKF--GLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANV-LINeRIKEELSN 523
Cdd:COG1033 225 PLALLLILLLLFLFFRSLrgVLLPLLVVLLAVIWTLGLMGLL-GIPLSPLTILVPPLLLAIGIDYGIhLLN-RYREERRK 302
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1447699308 524 GRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIvnLLYGGKRVKK 601
Cdd:COG1033 303 GLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLLPAL--LSLLPRPKPK 378
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
422-582 |
1.55e-12 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 66.48 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 422 IQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFM-IIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIV 500
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVgLRFEWRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 501 LTLAVAVDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAIT----TGIG 574
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLrkKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLAllvgVIVG 171
|
....*...
gi 1447699308 575 VATSMFTA 582
Cdd:pfam02355 172 TYSSIFIA 179
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
447-601 |
9.44e-12 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 67.96 E-value: 9.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 447 LAGLLVSILFMIIFYKKF--GLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNG 524
Cdd:COG1033 612 LLALLLIFLLLLLAFRSLrlGLISLIPNLLPILLTFGLMGLL-GIPLNIATAVVASIALGIGVDYTIHFLSRYREERRKG 690
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447699308 525 RTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601
Cdd:COG1033 691 GDLEEAIRRALRTTGKAILFTSLTLAAGFGVLLFSSFPPLADFGLLLALGLLVALLAALLLLPALLLLLDPRIAKKR 767
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
422-586 |
3.56e-11 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 64.49 E-value: 3.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 422 IQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII-FYKKFGLIATSALIANLILIVGIMSLLPgATLSMPGIAGIV 500
Cdd:PRK13021 108 VQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYrFEWRLASGALFALVHDVIFVLAFFALTQ-MEFNLTVLAAVL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 501 LTLAVAVDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATS 578
Cdd:PRK13021 187 AILGYSLNDSIIIADRIRELLiaKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTG 266
|
....*....
gi 1447699308 579 MFTAI-VGT 586
Cdd:PRK13021 267 TFSSIsVGT 275
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
422-582 |
2.33e-10 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 61.13 E-value: 2.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 422 IQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIV 500
Cdd:TIGR00966 80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEwRFALGAIVALVHDVIITVGVYSLF-GIEVNLTTVAALL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 501 LTLAVAVDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA----ITTGIG 574
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLrkYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSlallVGVIVG 238
|
....*...
gi 1447699308 575 VATSMFTA 582
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
371-586 |
3.94e-09 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 58.14 E-value: 3.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 371 GRAVLVKQEEVINIANIQSRL---------------GNSFRITGINNPNEARQLSLLLRAG--ALIAPIQIVEERTIGPT 433
Cdd:COG0341 47 GTLIEVSFEQPVDLEEVREALeeaglgdasvqtfgsDNDVLIRTPPLDGESAEEVEKVRAAlkEAFGDVEIVRVEFVGPT 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 434 LGMQNIEQGLEAclagLLVSILFMII-----FYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIvltLAVA-- 506
Cdd:COG0341 127 VGKELTRKALLA----LLVALIGILIyiafrFEWRFAVGAVVALLHDVLITLGIFSLF-GLEFDLTFIAAL---LTIIgy 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 507 -VDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFS-SIFDAnITTLIKVIILYAVGTGAIKGFAITTGIGVatsmfta 582
Cdd:COG0341 199 sLNDTVVVFDRIRENLrkYRKMTLAEIINLSINQTLSrTINTS-LTTLLVVLALLFFGGETLRDFALALLIGI------- 270
|
....
gi 1447699308 583 IVGT 586
Cdd:COG0341 271 IVGT 274
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
447-604 |
4.62e-08 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 55.93 E-value: 4.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 447 LAGLLVSILFMIIFYKkfGLIAT-----SALIAnLILIVGIMSLLpGATLSMPGIAGIVLT---LAVAVDANVLINERIK 518
Cdd:COG2409 176 LITLPVALVVLLLVFR--SLVAAllpllTAGLA-VGVALGLLALL-AAFTDVSSFAPNLLTmlgLGVGIDYALFLVSRYR 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 519 EELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLygGKR 598
Cdd:COG2409 252 EELRAGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVLAALTLLPALLALL--GRR 329
|
....*.
gi 1447699308 599 VKKLSI 604
Cdd:COG2409 330 VFWPRR 335
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
392-559 |
7.75e-08 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 54.17 E-value: 7.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 392 GNSFRIT-GINNPNEARQLSLLLRAGALIAPIQIVE--ERTIGPTLGMQNIEQGLEA-CLAGLLVSILFMIIFyKKF--- 464
Cdd:PRK08578 83 GNGYIITfGSGDDTDVDKLADAVKEFFNVDSISELNysEKQIGPTFGSQFQEQALKAvGFAFIGMAVVVFLIF-RTPvps 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 465 GLIATSALiANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNgrtvqqaIDEGYRGAFSSIFD 544
Cdd:PRK08578 162 LAVILSAF-SDIIIALALMNLF-GIELSLATVAALLMLIGYSVDSDILLTTRVLKRRGT-------FDESIKRAMRTGIT 232
|
170
....*....|....*
gi 1447699308 545 ANITTLIKVIILYAV 559
Cdd:PRK08578 233 MTLTTIAAMAVLYIV 247
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
438-592 |
3.46e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 53.30 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 438 NIEQGLEACLAGLLVSILFMIIFYKK----FGLIATSALIANLILIVGIMsllpGATLSMPGIAGIVLTLAVAVDANVLI 513
Cdd:TIGR00921 566 NEGMRRMTIAGAILVLMILLAVFRNPikavFPLIAIGSGILWAIGLMGLR----GIPSFLAMATTISIILGLGMDYSIHL 641
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1447699308 514 NERIKEELsNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNL 592
Cdd:TIGR00921 642 AERYFEER-KEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALLVL 719
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
429-604 |
4.48e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 52.92 E-value: 4.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 429 TIGPTLGMQnIEQGLEACLAGL--LVSILFMIIFYKKF-----GLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVL 501
Cdd:TIGR00921 178 TGSPAINYD-IEREFGKDMGTTmaISGILVVLVLLLDFkrwwrPLLPLVIILFGVAWVLGIMGWL-GIPLYATTLLAVPM 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 502 TLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFT 581
Cdd:TIGR00921 256 LIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLL 335
|
170 180
....*....|....*....|...
gi 1447699308 582 AIVGTRAIVNLLYGGKRVKKLSI 604
Cdd:TIGR00921 336 TLLVLPALLQSIDIGREKVKKEI 358
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
464-600 |
1.82e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 50.37 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 464 FGLIATSALIANLILIVGImsllpGATLSMPGIAGIVLtLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIF 543
Cdd:pfam03176 178 LSLGAAQGLVAILAHILGI-----GLSTFALNLLVVLL-IAVGTDYALFLVSRYREELRAGEDREEAVIRAVRGTGKVVT 251
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1447699308 544 DANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIvnLLYGGKRVK 600
Cdd:pfam03176 252 AAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPAL--LALLGRWGL 306
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
2-113 |
3.34e-05 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 43.84 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 2 LIVVIVIGLLYALPNLFGEDPAVQITgargvaASEQTL-----IQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRA 76
Cdd:PRK10629 16 AVLLLLAALLLAWSALRQQESTLAIR------AVHQGAslpdgFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAA 89
|
90 100 110
....*....|....*....|....*....|....*...
gi 1447699308 77 REALMGVMGDKYVVAL-NLAPATPRWLAAIHAEPMKLG 113
Cdd:PRK10629 90 KEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
394-601 |
1.00e-04 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 45.22 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 394 SFRITGINNPNEARQLSLLLRAGALIA---PIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIAT 469
Cdd:PRK13024 528 LVRTYGILSDDEEADTEIVAKLKNALKndkGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEwTFSLGAI 607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 470 SALIANLILIVGIMSLLpGATLSMPGIAGIvLTLaVAVDAN--VLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDA 545
Cdd:PRK13024 608 LALLHDVLIVIGFFSLF-RLEVDLTFIAAI-LTI-IGYSINdtVVVFDRIRENLrlYKKKDLREIVNKSINQTLSRTINT 684
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1447699308 546 NITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAI-VGTRAIVNLlyGGKRVKK 601
Cdd:PRK13024 685 SLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIfIAAPLWLDL--EKRRLKK 739
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
450-592 |
2.33e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 44.19 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 450 LLVSILFMIIFYKKF--GLIATSALIANLILIVGIMSLLP---GATLSMPGIAGIV-LTLAVAVDANVLINERIKEELSN 523
Cdd:TIGR00833 183 GIIVLIILLLVYRSPitMLVPLVSVGFSVVVAQGIVSLLGipgLIGVNAQTTVLLTaLVIGAGTDYAVFLTGRYHEERRK 262
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1447699308 524 GRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNL 592
Cdd:TIGR00833 263 GESLEEAAAEALRGTGKAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPALLTL 331
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
454-595 |
9.81e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 42.26 E-value: 9.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 454 ILFMIIFYKKFGLIATSALIANLIL----IVGIMSLL------PGATLSMPGIAGIVLtLAVAVDANVLINERIKEELSN 523
Cdd:TIGR00833 756 IVFMILALLLRAPVAPIVLIGSVALsylwALGLSVLAfqhilgAELHWSVLAGVFVLL-VALGVDYNMLLVSRIKEESPA 834
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447699308 524 GrtVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYG 595
Cdd:TIGR00833 835 G--NRTGIIRALGSTGGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLG 904
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
109-129 |
2.52e-03 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 35.73 E-value: 2.52e-03
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
382-583 |
3.95e-03 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 40.47 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 382 INIANIQ-SRLGNS----FRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILF 456
Cdd:PRK14726 609 LNLGEVQvERFGSPrdalIRIASQDGGENAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIY 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 457 MII-FYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRT--VQQAIDE 533
Cdd:PRK14726 689 IWIrFEWQFAVGAIIATLHDVILTLGLFVLT-GIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKmpLPILIDA 767
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1447699308 534 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAI 583
Cdd:PRK14726 768 SINQTLSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSI 817
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
430-583 |
7.38e-03 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 39.22 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699308 430 IGPTLGMQNIEQGLEACLAGLLVsiLFMIIFYKKFGLIATSALIANL--ILIVGIMSLLPGATLSMPGIAGIVLTLAVAV 507
Cdd:PRK13023 568 VGPTVSEQLSRAGVLAVILSLIG--IFIYVWFRFRWQLALGAVLSTLhdVVILSGMFIVFRMEFNLWSVAAILTIIGYSL 645
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1447699308 508 DANVLINERIKEELSNGRT--VQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAI 583
Cdd:PRK13023 646 NDTVVIYDRVRENLRRYKSapLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSI 723
|
|
| |
