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Conserved domains on  [gi|15829933|ref|NP_308706|]
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LPS assembly OM complex LptDE lipoprotein component [Escherichia coli O157:H7 str. Sakai]

Protein Classification

LPS-assembly lipoprotein LptE( domain architecture ID 10013648)

LPS-assembly lipoprotein LptE, together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10796 PRK10796
LPS-assembly lipoprotein RlpB; Provisional
1-189 3.06e-115

LPS-assembly lipoprotein RlpB; Provisional


:

Pssm-ID: 236762  Cd Length: 188  Bit Score: 325.50  E-value: 3.06e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933    1 MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDkETTRKDVPSLRLGAV 80
Cdd:PRK10796   1 MRYLLTLLLGLAVLVTAGCGFHLRGTTQVPSEMKTLILDSGDPYGPLSRAVRNQLRLNNVELLD-DTTRKDVPSLRLGGS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933   81 SISQDTASVFRNGQTAEYQMVMTVSASVLIPGRDIYPISTKVFRSFFDNPQMALAKDNEQEMIIKEMYDRAAEQLIRKLP 160
Cdd:PRK10796  80 SESKDTASVFQDGQTAEYQMVLTVNAQVLIPGHDIYPISVKVFRSFFDNPLMALAKDAEQDMIVQEMRDQAAEQLVRKLL 159
                        170       180
                 ....*....|....*....|....*....
gi 15829933  161 SIRAADIRSDEEQTSTTTDTPATPARVST 189
Cdd:PRK10796 160 SVRAADIRKTEEQASTTTDTPATPARVST 188
 
Name Accession Description Interval E-value
PRK10796 PRK10796
LPS-assembly lipoprotein RlpB; Provisional
1-189 3.06e-115

LPS-assembly lipoprotein RlpB; Provisional


Pssm-ID: 236762  Cd Length: 188  Bit Score: 325.50  E-value: 3.06e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933    1 MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDkETTRKDVPSLRLGAV 80
Cdd:PRK10796   1 MRYLLTLLLGLAVLVTAGCGFHLRGTTQVPSEMKTLILDSGDPYGPLSRAVRNQLRLNNVELLD-DTTRKDVPSLRLGGS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933   81 SISQDTASVFRNGQTAEYQMVMTVSASVLIPGRDIYPISTKVFRSFFDNPQMALAKDNEQEMIIKEMYDRAAEQLIRKLP 160
Cdd:PRK10796  80 SESKDTASVFQDGQTAEYQMVLTVNAQVLIPGHDIYPISVKVFRSFFDNPLMALAKDAEQDMIVQEMRDQAAEQLVRKLL 159
                        170       180
                 ....*....|....*....|....*....
gi 15829933  161 SIRAADIRSDEEQTSTTTDTPATPARVST 189
Cdd:PRK10796 160 SVRAADIRKTEEQASTTTDTPATPARVST 188
LptE COG2980
Outer membrane lipoprotein LptE/RlpB (LPS assembly) [Cell wall/membrane/envelope biogenesis];
2-165 2.15e-64

Outer membrane lipoprotein LptE/RlpB (LPS assembly) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442219  Cd Length: 172  Bit Score: 195.90  E-value: 2.15e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933   2 RYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETtrKDVPSLRLGAVS 81
Cdd:COG2980   5 RLLALLLLLLAVLLLAGCGFHLRGTTQLPPEFKTLYLQSSDPYSPLTRALRRQLRANGVRLVDDPA--DADAVLRILSES 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933  82 ISQDTASVFRNGQTAEYQMVMTVSASVLIP--GRDIYPISTKVFRSFFDNPQMALAKDNEQEMIIKEMYDRAAEQLIRKL 159
Cdd:COG2980  83 RERRTLSVNANGRVAEYELTYTVRFQVRDPdgKELIPPQTVSVRRDYSYNPNNALAKEAEEELLRREMRRDAAQQLLRRL 162

                ....*.
gi 15829933 160 PSIRAA 165
Cdd:COG2980 163 AAVKPA 168
LptE pfam04390
Lipopolysaccharide-assembly; LptE (formerly known as RplB) is involved in ...
37-159 7.70e-04

Lipopolysaccharide-assembly; LptE (formerly known as RplB) is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organizms. The lipopolysaccharide component of the outer bacterial membrane is transported from its source of origin to the outer membrane by a set of proteins constituting a transport machinery that is made up of LptA, LptB, LptC, LptD, LptE. LptD appears to be anchored in the outer membrane, and LptE forms a complex with it. This part of the machinery complex is involved in the assembly of lipopolysaccharide in the outer leaflet of the outer membrane.


Pssm-ID: 461289  Cd Length: 84  Bit Score: 36.90  E-value: 7.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933    37 ILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRkdvpslrlgAVSISQDTASVFRNGQTAEYQMVMTVSASVlipgrdiy 116
Cdd:pfam04390   6 VSSFDNPTSELTNALRDELRRTGLGVVVVDAAA---------AVLREGRILSVDGTGRVAEYRLTLTVRFRL-------- 68
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 15829933   117 pistkvfrsffdnpqmalakdneqemiIKEMYDRAAEQLIRKL 159
Cdd:pfam04390  69 ---------------------------TDRMAEDLADQIVRRL 84
 
Name Accession Description Interval E-value
PRK10796 PRK10796
LPS-assembly lipoprotein RlpB; Provisional
1-189 3.06e-115

LPS-assembly lipoprotein RlpB; Provisional


Pssm-ID: 236762  Cd Length: 188  Bit Score: 325.50  E-value: 3.06e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933    1 MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDkETTRKDVPSLRLGAV 80
Cdd:PRK10796   1 MRYLLTLLLGLAVLVTAGCGFHLRGTTQVPSEMKTLILDSGDPYGPLSRAVRNQLRLNNVELLD-DTTRKDVPSLRLGGS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933   81 SISQDTASVFRNGQTAEYQMVMTVSASVLIPGRDIYPISTKVFRSFFDNPQMALAKDNEQEMIIKEMYDRAAEQLIRKLP 160
Cdd:PRK10796  80 SESKDTASVFQDGQTAEYQMVLTVNAQVLIPGHDIYPISVKVFRSFFDNPLMALAKDAEQDMIVQEMRDQAAEQLVRKLL 159
                        170       180
                 ....*....|....*....|....*....
gi 15829933  161 SIRAADIRSDEEQTSTTTDTPATPARVST 189
Cdd:PRK10796 160 SVRAADIRKTEEQASTTTDTPATPARVST 188
LptE COG2980
Outer membrane lipoprotein LptE/RlpB (LPS assembly) [Cell wall/membrane/envelope biogenesis];
2-165 2.15e-64

Outer membrane lipoprotein LptE/RlpB (LPS assembly) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442219  Cd Length: 172  Bit Score: 195.90  E-value: 2.15e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933   2 RYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETtrKDVPSLRLGAVS 81
Cdd:COG2980   5 RLLALLLLLLAVLLLAGCGFHLRGTTQLPPEFKTLYLQSSDPYSPLTRALRRQLRANGVRLVDDPA--DADAVLRILSES 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933  82 ISQDTASVFRNGQTAEYQMVMTVSASVLIP--GRDIYPISTKVFRSFFDNPQMALAKDNEQEMIIKEMYDRAAEQLIRKL 159
Cdd:COG2980  83 RERRTLSVNANGRVAEYELTYTVRFQVRDPdgKELIPPQTVSVRRDYSYNPNNALAKEAEEELLRREMRRDAAQQLLRRL 162

                ....*.
gi 15829933 160 PSIRAA 165
Cdd:COG2980 163 AAVKPA 168
LptE pfam04390
Lipopolysaccharide-assembly; LptE (formerly known as RplB) is involved in ...
37-159 7.70e-04

Lipopolysaccharide-assembly; LptE (formerly known as RplB) is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organizms. The lipopolysaccharide component of the outer bacterial membrane is transported from its source of origin to the outer membrane by a set of proteins constituting a transport machinery that is made up of LptA, LptB, LptC, LptD, LptE. LptD appears to be anchored in the outer membrane, and LptE forms a complex with it. This part of the machinery complex is involved in the assembly of lipopolysaccharide in the outer leaflet of the outer membrane.


Pssm-ID: 461289  Cd Length: 84  Bit Score: 36.90  E-value: 7.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829933    37 ILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRkdvpslrlgAVSISQDTASVFRNGQTAEYQMVMTVSASVlipgrdiy 116
Cdd:pfam04390   6 VSSFDNPTSELTNALRDELRRTGLGVVVVDAAA---------AVLREGRILSVDGTGRVAEYRLTLTVRFRL-------- 68
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 15829933   117 pistkvfrsffdnpqmalakdneqemiIKEMYDRAAEQLIRKL 159
Cdd:pfam04390  69 ---------------------------TDRMAEDLADQIVRRL 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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