|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-648 |
0e+00 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 1219.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGY 80
Cdd:PRK10255 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 81 FVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH 160
Cdd:PRK10255 81 FVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG 240
Cdd:PRK10255 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 241 LPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAG 320
Cdd:PRK10255 241 LPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 321 AIDYALMYNLPAASQNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLNQLATNYIAAV 400
Cdd:PRK10255 321 AIDYALMYNLPAASQNVWMLLVMGVVFFAIYFVLFSAVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLTQLATNYIAAV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 401 GGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPVAAASAEATP 480
Cdd:PRK10255 401 GGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPVAAASAEATP 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 481 ATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLET 560
Cdd:PRK10255 481 ATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLET 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 561 EKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGQ 640
Cdd:PRK10255 561 EKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGQ 640
|
....*...
gi 15829963 641 TPLYEIKK 648
Cdd:PRK10255 641 TPLYEIKK 648
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
3-463 |
0e+00 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 641.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 3 ILGFFQRLGRALQLPIAVLPVAALLLRFG----QPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAV 78
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGnathGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDNDGAAALAGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 79 GYFVLTK--------AMVTINPEINMGVLA------GIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVL 144
Cdd:TIGR01998 81 AYFVVTKvlsppplaAALGIKSEINMAFSAwknvfvGILAGLIAGALYNRFSEIKLPEALSFFSGKRLVPIMAGFVGLVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 145 AAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQ---IGEFTNAAGTvfhGDINRFYa 221
Cdd:TIGR01998 161 AALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFDvagINDFGNFTGG---GDLNRFK- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 222 gdGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGI 301
Cdd:TIGR01998 237 --GIAGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYALHALLTGL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 302 SLFVATLLGIHAGFSFSAGAIDYALMYNLPAASQNvWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEA 381
Cdd:TIGR01998 315 SLFIAAMLHWTAGFSFSAGLIDYVLSFNNPTANQP-LMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDPEGATAAA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 382 NSNTEEGLNQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDA 461
Cdd:TIGR01998 394 VTSTGDSKMQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPALKALGARGVVKLGKHNLQVILGPLAEIVAGE 473
|
..
gi 15829963 462 MK 463
Cdd:TIGR01998 474 MK 475
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
3-466 |
5.63e-75 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 247.93 E-value: 5.63e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 3 ILGFFQRLGRALQLPIAVLPVAALLLRFGQ----PDLLNV--------AFIAQAGGAIFDNLALIFAIGVASSWSKDSAG 70
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGAlltnPGLLGEgsflsgtyQILNAAGDAVFYFLPLLFAIGAAKGFGGNPAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 71 AAALAGAVGYFVLTKAMVT---------INPEI--NMGVLAGIITGLVggAAY-NRWSDIKLPDFLSFFggkrFVPIATG 138
Cdd:COG1263 88 AAVIGYLLVHPTLLNAYAVaggyisflgIPTLIgyQGGVFPGILAGWL--AAYlEKFLKKKLPDALGFF----FVPILTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 139 FFCLVLAA-IFGYVWPPVQHAIHAGGEWIVS-AGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEftnaagtvfHGDI 216
Cdd:COG1263 162 LIMVPLALlVIGPIWPPIGNGIAAGLGWIYGlAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGG---------TGDD 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 217 nrfyagdgtagmfmsGFFPI---MMFGLPGAALAMYFAAPKerRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYL 293
Cdd:COG1263 233 ---------------GLFPIlaaAMFGQPGAALAVYLKAKP--NKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFI 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 294 LHALLTGISLFVATLLGIHAgFSFS-AGAIDYALMYNLPAASqnvWMLLVMGVVFFAIYFVVFSLVIrmfnlktpGREDK 372
Cdd:COG1263 296 AHAIGGGLGGAIAGLLGVKA-FSFGvGGLIDFPSILNPGATN---LLLYLIGLVIAFVYYFVFTFLI--------GREDE 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 373 EDEIVTEEANSNTEEGlnqlATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVIVG 452
Cdd:COG1263 364 EEEEKLATKADAKKEE----AEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGG 439
|
490
....*....|....
gi 15829963 453 AKAESIGDAMKKVV 466
Cdd:COG1263 440 VGGGGVVIVIVIII 453
|
|
| PTS_IIA_glc |
cd00210 |
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
501-624 |
3.39e-61 |
|
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Pssm-ID: 238128 [Multi-domain] Cd Length: 124 Bit Score: 199.44 E-value: 3.39e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 501 LVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGK 580
Cdd:cd00210 1 LASPITGEIVPLDQVPDEVFASKMMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15829963 581 GFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD 624
Cdd:cd00210 81 GFTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
|
|
| PTS_EIIA_1 |
pfam00358 |
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; |
500-619 |
3.59e-54 |
|
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
Pssm-ID: 459779 [Multi-domain] Cd Length: 121 Bit Score: 180.65 E-value: 3.59e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 500 ELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEG 579
Cdd:pfam00358 2 EIYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEGKVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKLKG 81
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 15829963 580 KGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVC 619
Cdd:pfam00358 82 EGFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-648 |
0e+00 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 1219.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGY 80
Cdd:PRK10255 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 81 FVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH 160
Cdd:PRK10255 81 FVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG 240
Cdd:PRK10255 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 241 LPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAG 320
Cdd:PRK10255 241 LPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 321 AIDYALMYNLPAASQNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLNQLATNYIAAV 400
Cdd:PRK10255 321 AIDYALMYNLPAASQNVWMLLVMGVVFFAIYFVLFSAVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLTQLATNYIAAV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 401 GGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPVAAASAEATP 480
Cdd:PRK10255 401 GGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPVAAASAEATP 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 481 ATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLET 560
Cdd:PRK10255 481 ATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLET 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 561 EKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGQ 640
Cdd:PRK10255 561 EKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGQ 640
|
....*...
gi 15829963 641 TPLYEIKK 648
Cdd:PRK10255 641 TPLYEIKK 648
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
3-463 |
0e+00 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 641.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 3 ILGFFQRLGRALQLPIAVLPVAALLLRFG----QPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAV 78
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGnathGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDNDGAAALAGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 79 GYFVLTK--------AMVTINPEINMGVLA------GIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVL 144
Cdd:TIGR01998 81 AYFVVTKvlsppplaAALGIKSEINMAFSAwknvfvGILAGLIAGALYNRFSEIKLPEALSFFSGKRLVPIMAGFVGLVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 145 AAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQ---IGEFTNAAGTvfhGDINRFYa 221
Cdd:TIGR01998 161 AALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFDvagINDFGNFTGG---GDLNRFK- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 222 gdGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGI 301
Cdd:TIGR01998 237 --GIAGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYALHALLTGL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 302 SLFVATLLGIHAGFSFSAGAIDYALMYNLPAASQNvWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEA 381
Cdd:TIGR01998 315 SLFIAAMLHWTAGFSFSAGLIDYVLSFNNPTANQP-LMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDPEGATAAA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 382 NSNTEEGLNQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDA 461
Cdd:TIGR01998 394 VTSTGDSKMQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPALKALGARGVVKLGKHNLQVILGPLAEIVAGE 473
|
..
gi 15829963 462 MK 463
Cdd:TIGR01998 474 MK 475
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
2-467 |
3.11e-128 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 387.60 E-value: 3.11e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 2 NILGFFQRLGRALQLPIAVLPVAALLLRFG----QPDLLNVA-------------FIAQAGGAIFDNLALIFAIGVASSW 64
Cdd:TIGR02002 3 KAFGQLQKIGKALMLPVAVLPVAGILLGFGnanqNNQVFSFLpflhmewiqlvskVMEAAGGIIFANLPLIFAIGVALGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 65 SKDSAGAAALAGAVgYFVLTKAM--------------------VTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFL 124
Cdd:TIGR02002 83 AGNDGVAGLAALVG-YLIMNKTMgvvagltllliaseiasfasVLGIPTLQTGVFGGIIIGAIAAYCYNRFYNIKLPEYL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 125 SFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGE 203
Cdd:TIGR02002 162 GFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNpVVAFFIFGFIERSLIPFGLHHIFNAPFWFEFGS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 204 FTNAAGTVFHGDINRFYAG--DG---TAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTE 278
Cdd:TIGR02002 242 YTNEAGNLFRGDQPIFMAQlkDGvafTAGGFLSGGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFLTGITE 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 279 PLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYaLMYNLPAASQNVWMLLVMGVVFFAIYFVVFSLV 358
Cdd:TIGR02002 322 PLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTFSGGAIDF-ILYGLLSNRSKAWLFIIVGIGYAIIYYFLFRFL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 359 IRMFNLKTPGREDKEDEIVTEEANSnteeglnQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASG 438
Cdd:TIGR02002 401 IKKLNLKTPGREDATAEAKATGEPS-------ELAFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKLGAAG 473
|
490 500
....*....|....*....|....*....
gi 15829963 439 VVKLNkQTIQVIVGAKAESIGDAMKKVVA 467
Cdd:TIGR02002 474 VLVVG-NNVQAIFGPKSDTIKSEMHDIIR 501
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
1-462 |
3.76e-123 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 373.67 E-value: 3.76e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQ------PDLLNvAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAAL 74
Cdd:PRK11089 3 KNAFANLQKVGKSLMLPVSVLPIAGILLGVGSanfswlPAVVS-HVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 75 AGAVgYFVLTKAMVTINP--------------EINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFF 140
Cdd:PRK11089 82 AVVA-YGIMVKTMAVVAPlvlhlpaeeiaakhLADTGVLGGIIAGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 141 CLVLAAIFGYVWPPVQHAIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRF 219
Cdd:PRK11089 161 AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNpVVAFGIYGFVERSLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRY 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 220 YAGDGTAGMfMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLT 299
Cdd:PRK11089 241 MAGDPTAGK-LSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 300 GISLFVATLLGIHAGFSFSAGAIDYALmynLPAASQNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIvte 379
Cdd:PRK11089 320 GLAFPICILLGMRDGTSFSHGLIDFIV---LSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDETEDA--- 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 380 eansnTEEGLNQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVkLNKQTIQVIVGAKAESIG 459
Cdd:PRK11089 394 -----KATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVV-VAGSGVQAIFGTKSDNLK 467
|
...
gi 15829963 460 DAM 462
Cdd:PRK11089 468 TEM 470
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
6-470 |
2.86e-75 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 250.42 E-value: 2.86e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 6 FFQRLGRALQLPIAVLPVAALLLRFGQ-----------PDLLNVAF------IAQAGGAIFDNLALIFAIGVASSWSKDS 68
Cdd:PRK10110 14 FFQQLGKTFMLPVALLSFCGIMLGIGSslsshdvitliPFLGNPVLqaiftwMSKIGSFAFSFLPVMFCIAIPLGLAREN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 69 AGAAALAGAVGYFVLTKA----------MVTINPE---------------INMGVLAGIITGLVGGAAYNRWSDIKLPDF 123
Cdd:PRK10110 94 KGVAAFAGFVGYAVMNLAvnfwltnkgiLPTTDAAvlkanniqsilgiqsIDTGILGAVIAGIIVWMLHERFHNIRLPDA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 124 LSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLntIAWFQige 203
Cdd:PRK10110 174 LAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHIL--VALIR--- 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 204 FTNAAGTV------FHGDINRFYA---------GDGTAGMFMS-GFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSV 267
Cdd:PRK10110 249 FTDAGGTQevcgqtVSGALTIFQAqlscptthgFSESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 268 AVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGfSFSAGAIDYALMYNLPAASQNVWMLLVMGVVF 347
Cdd:PRK10110 329 VIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIG-NTDGNIIDFVVFGILHGLSTKWYMVPVVAAIW 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 348 FAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTE-EGLNQLATnyIAAVGGTDNLKAIDACITRLRLTVADSARV 426
Cdd:PRK10110 408 FVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGkSGYNVPAI--LEALGGADNIVSLDNCITRLRLSVKDMSLV 485
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 15829963 427 NDTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGP 470
Cdd:PRK10110 486 DVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQ 529
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
3-466 |
5.63e-75 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 247.93 E-value: 5.63e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 3 ILGFFQRLGRALQLPIAVLPVAALLLRFGQ----PDLLNV--------AFIAQAGGAIFDNLALIFAIGVASSWSKDSAG 70
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGAlltnPGLLGEgsflsgtyQILNAAGDAVFYFLPLLFAIGAAKGFGGNPAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 71 AAALAGAVGYFVLTKAMVT---------INPEI--NMGVLAGIITGLVggAAY-NRWSDIKLPDFLSFFggkrFVPIATG 138
Cdd:COG1263 88 AAVIGYLLVHPTLLNAYAVaggyisflgIPTLIgyQGGVFPGILAGWL--AAYlEKFLKKKLPDALGFF----FVPILTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 139 FFCLVLAA-IFGYVWPPVQHAIHAGGEWIVS-AGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEftnaagtvfHGDI 216
Cdd:COG1263 162 LIMVPLALlVIGPIWPPIGNGIAAGLGWIYGlAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGG---------TGDD 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 217 nrfyagdgtagmfmsGFFPI---MMFGLPGAALAMYFAAPKerRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYL 293
Cdd:COG1263 233 ---------------GLFPIlaaAMFGQPGAALAVYLKAKP--NKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFI 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 294 LHALLTGISLFVATLLGIHAgFSFS-AGAIDYALMYNLPAASqnvWMLLVMGVVFFAIYFVVFSLVIrmfnlktpGREDK 372
Cdd:COG1263 296 AHAIGGGLGGAIAGLLGVKA-FSFGvGGLIDFPSILNPGATN---LLLYLIGLVIAFVYYFVFTFLI--------GREDE 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 373 EDEIVTEEANSNTEEGlnqlATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVIVG 452
Cdd:COG1263 364 EEEEKLATKADAKKEE----AEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGG 439
|
490
....*....|....
gi 15829963 453 AKAESIGDAMKKVV 466
Cdd:COG1263 440 VGGGGVVIVIVIII 453
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
45-311 |
2.58e-68 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 224.50 E-value: 2.58e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 45 GGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINP--------EINM----GVLAGIITGLVGGAAY 112
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQavgnffgfEIAKvgytGVVGPIIVGAIALALH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 113 NRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVqhAIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQ 191
Cdd:TIGR00852 81 ERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHWLYSAGgALGGAIFGFLYRLLVPTGLHH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 192 VLNTIAWFQI-GEFTNAAGTVFHGDINRFYA--GDGTAGMFMSG--------FFPIMMFGLPGAALAMYFAAPKERRPMV 260
Cdd:TIGR00852 159 IFYAIFIQLIaGGTVIGGGQVIPGDALANMAqgGAALAVFFTAGdakfksigLPAAFSAGLGITEPAMYGVALRERRPFV 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 15829963 261 GGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGI 311
Cdd:TIGR00852 239 AGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| NagE |
COG2190 |
Phosphotransferase system IIA component [Carbohydrate transport and metabolism]; |
500-648 |
3.80e-66 |
|
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
Pssm-ID: 441793 [Multi-domain] Cd Length: 154 Bit Score: 213.83 E-value: 3.80e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 500 ELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEG 579
Cdd:COG2190 7 TIYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGGKVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGIDTVKLNG 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15829963 580 KGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGQtPLYEIKK 648
Cdd:COG2190 87 EGFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKSVELTKSGQVKAGD-PLLTVKL 154
|
|
| PTS_IIA_glc |
cd00210 |
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
501-624 |
3.39e-61 |
|
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Pssm-ID: 238128 [Multi-domain] Cd Length: 124 Bit Score: 199.44 E-value: 3.39e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 501 LVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGK 580
Cdd:cd00210 1 LASPITGEIVPLDQVPDEVFASKMMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15829963 581 GFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD 624
Cdd:cd00210 81 GFTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
|
|
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
7-452 |
6.93e-61 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 211.98 E-value: 6.93e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 7 FQRLGRALQLPIAVLPVAALLLRFG----QPDLLN------------VAFIAQAGGAIFDNLALIFAIGVASSWSKDSAG 70
Cdd:TIGR02005 4 IQRFGGAMFVPVLLFAFAGIVVGFAilfkNPDIMGsladqntfwykfWSVIEEGGWTVFRQMPLIFVVGLPIGLAKKAQG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 71 AAALAGAVGYFV---LTKAMVTINP-------EINMGV-------LAGIIT---GLVGG--------AAYNRWSDIKLPD 122
Cdd:TIGR02005 84 RACLAALMGYLTfnyFINAILTQWGssfgvnfTQGVGVgvsgltsIAGIKTldtSIIGAiiisgiitYIHNRFFDKRLPV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 123 FLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQvlntiawFQIG 202
Cdd:TIGR02005 164 FLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHH-------FIYG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 203 EFTNAAGTVFHG-------DINRF-YAGDGTAGMFMSGFFPIM----MFGLPGAALAMYFAAPKERRPMVGGMLLSVAVT 270
Cdd:TIGR02005 237 PFIFGPAVVNHGiqaywaqHLNEFaKSTKPLKELFPYGGFALHgnskVFGCLGIALAMYATAPPENRKKVAGLLIPATLT 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 271 AFLTGVTEPLEFLFMFLAPLLYLLHalltgiSLFVATLLGIHAGF----SFSAGAIDYALMYNLPAASQNVWML---LVM 343
Cdd:TIGR02005 317 AVVVGITEPLEFTFLFIAPYLFVVH------AVLAASMATVMYAFgvvgNMGGGLIDFIATNWLPLFKNHWGTYvtqIII 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 344 GVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEI-------------VTEEANsNTEEGLNQlATNYIAAVGGTDNLKAID 410
Cdd:TIGR02005 391 GLCFTAIYFLVFRFLILKFNIPTPGREDTEEEVklyskadykakkgDSVESK-RASSGNDK-AAYFLQALGGKENIKDVT 468
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 15829963 411 ACITRLRLTVADSARVNDT-MCKRLGASGVVKlNKQTIQVIVG 452
Cdd:TIGR02005 469 NCATRLRISVKDESKVLDDeVFKKAGAHGVVR-SGKAIQVIVG 510
|
|
| PTBA |
TIGR00830 |
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside ... |
501-621 |
6.70e-60 |
|
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. The three-dimensional structures of the IIA and IIB domains of the E. coli glucose permease have been elucidated. IIAglchas a complex b-sandwich structure while IIBglc is a split ab-sandwich with a topology unrelated to the split ab-sandwich structure of HPr. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273289 [Multi-domain] Cd Length: 121 Bit Score: 195.93 E-value: 6.70e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 501 LVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGK 580
Cdd:TIGR00830 1 IVSPISGEIVPLDQVPDEVFASKIVGDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDNGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 15829963 581 GFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSN 621
Cdd:TIGR00830 81 GFTSHVEEGDRVKKGDPLLEFDLKAIKKKGYSITTPVVVTN 121
|
|
| PRK09439 |
PRK09439 |
PTS system glucose-specific transporter subunit; Provisional |
500-648 |
6.32e-59 |
|
PTS system glucose-specific transporter subunit; Provisional
Pssm-ID: 181859 [Multi-domain] Cd Length: 169 Bit Score: 195.19 E-value: 6.32e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 500 ELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEG 579
Cdd:PRK09439 22 EIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKG 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15829963 580 KGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLiIKAQGHVVAGQTPLYEIKK 648
Cdd:PRK09439 102 EGFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKEL-IKLSGSVTAGETPVIRVKK 169
|
|
| PTS_EIIA_1 |
pfam00358 |
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; |
500-619 |
3.59e-54 |
|
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
Pssm-ID: 459779 [Multi-domain] Cd Length: 121 Bit Score: 180.65 E-value: 3.59e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 500 ELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEG 579
Cdd:pfam00358 2 EIYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEGKVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKLKG 81
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 15829963 580 KGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVC 619
Cdd:pfam00358 82 EGFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
11-286 |
3.79e-50 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 176.77 E-value: 3.79e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 11 GRALQLPIAVLPVAALLLRFG--------------QPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKD--------- 67
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpndttglpaggfTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGdgvagaagl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 68 ------SAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSD---IKLPDFLSFFGGKRFVPIATG 138
Cdd:pfam02378 81 igllsfNLAAAISVALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 139 F-FCLVLAAIFGYVWPPVQHAIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAagtvfhgdI 216
Cdd:pfam02378 161 FvTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGGSNP--------I 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 217 NRFYAGDGTAGMFMSGFFpIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMF 286
Cdd:pfam02378 233 ANQQAYGAGAAHILTGGF-DVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPF 301
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
488-646 |
3.93e-34 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 137.92 E-value: 3.93e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 488 KPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIV 567
Cdd:PRK09824 468 KTPEVITPPEQGGICSPMTGEVVPLEQVADTTFASGLLGKGIAILPSVGEVRSPVAGRVASLFATLHAIGLESDDGVEVL 547
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15829963 568 VHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGqTPLYEI 646
Cdd:PRK09824 548 IHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAG-EPLLSI 625
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
360-452 |
7.14e-26 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 101.67 E-value: 7.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 360 RMFNLKTPGREDkedeiVTEEANSNTEEGL-NQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASG 438
Cdd:TIGR00826 1 TRLRLKTPGREK-----ADEEAIAAGEGVKgVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHG 75
|
90
....*....|....
gi 15829963 439 VVKLNkQTIQVIVG 452
Cdd:TIGR00826 76 VNPLQ-RAVQVISG 88
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
390-466 |
2.91e-24 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 96.34 E-value: 2.91e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15829963 390 NQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQtIQVIVGAKAESIGDAMKKVV 466
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVKNGGQ-VQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
390-464 |
8.86e-22 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 89.51 E-value: 8.86e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15829963 390 NQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVIVG-AKAESIGDAMKK 464
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGpGVADVYKEAIKL 76
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
341-466 |
2.16e-15 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 73.98 E-value: 2.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 341 LVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVT---------EEANSNTEEGLNQlATNYIAAVGGTDNLKAIDA 411
Cdd:PRK09702 13 IAIGLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSkaeykasrgQTTAAEPKKELDQ-AAGILQALGGVGNISSINN 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 15829963 412 CITRLRLTVAD-SARVNDTMCKRLGASGVVKlNKQTIQVIVGAKAESIGDAMKKVV 466
Cdd:PRK09702 92 CATRLRIALHDmSQTLDDEVFKKLGAHGVFR-SGDAIQVIIGLHVSQLREQLDSLI 146
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
395-424 |
8.68e-10 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 53.91 E-value: 8.68e-10
10 20 30
....*....|....*....|....*....|
gi 15829963 395 NYIAAVGGTDNLKAIDACITRLRLTVADSA 424
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKDES 31
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
385-467 |
9.76e-07 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 51.60 E-value: 9.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 385 TEEGLNQLatnyIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRL-GASGVVKLNKQtIQVIVG-AKAESIGDAM 462
Cdd:PRK09586 5 SSELLNTI----LTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIeGVKGVILSDDQ-VQVVLGpGKAQRAAKAM 79
|
....*
gi 15829963 463 KKVVA 467
Cdd:PRK09586 80 NELLG 84
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
392-470 |
4.42e-05 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 46.33 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15829963 392 LATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRL-GASGVVKLNKQTiQVIVGakaESIGDAMKKVVARGP 470
Cdd:PRK09796 8 LARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIpGVLGVVRSDNQC-QVIIG---NTVSQAFQEVVSLLP 83
|
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