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Conserved domains on  [gi|15830285|ref|NP_309058|]
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6-N-hydroxylaminopurine detoxification oxidoreductase [Escherichia coli O157:H7 str. Sakai]

Protein Classification

YcbX family protein( domain architecture ID 11461389)

YcbX family protein contains MOSC and Fe-S domains, similar to Escherichia coli 6-N-hydroxylaminopurine resistance protein YcbX

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YcbX COG3217
N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and ...
 1-264 2.69e-111

N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and metabolism, Defense mechanisms];


:

Pssm-ID: 442450 [Multi-domain]  Cd Length: 240  Bit Score: 324.45  E-value: 2.69e-111
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285   1 MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDG-LHLTAPDSSSAYVR 79
Cdd:COG3217   1 MGRVSRLYRYPVKSLAGEALESATLTAGGLPGDRRWALVDADGRFLTQRRHPRLALLRARLDEDGgLTLTAPGGESLTVD 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285  80 FADfatqdaptevwgthftarIAPEAINKWLSGFFSREVQLRWVGPQMTRrvkrhnTVPLSFADGYPYLLANEASLRDLQ 159
Cdd:COG3217  81 LDD------------------DAGDAAAAWLSEYLGRPVRLVRLPPESRR------GPPVGFADGYPVLLISTASLADLN 136

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285 160 QRCPASVKMEQFRPNLVVSGASAWEEDSW--KVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPagEPLKTLQSFRtaQD 237
Cdd:COG3217 137 ARLGAPVDMRRFRPNLVVDGLEPFAEDDWvgRRLRIGEVRLRVVKPCSRCVVTTVDPETGERDP--EPLRTLARYR--GA 212

                       250       260
                ....*....|....*....|....*..
gi 15830285 238 NGDVDFGQNLIARNSGVIRVGDEVEIL 264
Cdd:COG3217 213 DGHVDFGVNAIVLEGGTIRVGDEVEVL 239
Fdx COG0633
Ferredoxin [Energy production and conversion];
289-367 2.46e-20

Ferredoxin [Energy production and conversion];


:

Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 84.13  E-value: 2.46e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285 289 ANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGD----DGTILCCSCVPKTA 364
Cdd:COG0633   2 PKVTFIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSDeeraAGSRLACQARPTSD 81


                ...
gi 15830285 365 LKL 367
Cdd:COG0633  82 LVV 84
 
Name Accession Description Interval E-value
YcbX COG3217
N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and ...
 1-264 2.69e-111

N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and metabolism, Defense mechanisms];


Pssm-ID: 442450 [Multi-domain]  Cd Length: 240  Bit Score: 324.45  E-value: 2.69e-111
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285   1 MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDG-LHLTAPDSSSAYVR 79
Cdd:COG3217   1 MGRVSRLYRYPVKSLAGEALESATLTAGGLPGDRRWALVDADGRFLTQRRHPRLALLRARLDEDGgLTLTAPGGESLTVD 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285  80 FADfatqdaptevwgthftarIAPEAINKWLSGFFSREVQLRWVGPQMTRrvkrhnTVPLSFADGYPYLLANEASLRDLQ 159
Cdd:COG3217  81 LDD------------------DAGDAAAAWLSEYLGRPVRLVRLPPESRR------GPPVGFADGYPVLLISTASLADLN 136

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285 160 QRCPASVKMEQFRPNLVVSGASAWEEDSW--KVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPagEPLKTLQSFRtaQD 237
Cdd:COG3217 137 ARLGAPVDMRRFRPNLVVDGLEPFAEDDWvgRRLRIGEVRLRVVKPCSRCVVTTVDPETGERDP--EPLRTLARYR--GA 212

                       250       260
                ....*....|....*....|....*..
gi 15830285 238 NGDVDFGQNLIARNSGVIRVGDEVEIL 264
Cdd:COG3217 213 DGHVDFGVNAIVLEGGTIRVGDEVEVL 239
MOSC_N pfam03476
MOSC N-terminal beta barrel domain; This domain is found to the N-terminus of pfam03473. The ...
 1-117 2.50e-45

MOSC N-terminal beta barrel domain; This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.


Pssm-ID: 281474  Cd Length: 118  Bit Score: 151.36  E-value: 2.50e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285     1 MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS-PVHDGLHLTAPDSSSAYVR 79
Cdd:pfam03476   1 MARVSSLYVYPIKSCRGESLSRAELTAAGLAWDRRFMVVDSDGKFVTARREPRLVLIRTTlDEDGGLTLTAPGMPDLSVP 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 15830285    80 FADFATQDAPTEVWGTHFTARIAPEAINKWLSGFFSRE 117
Cdd:pfam03476  81 LADNKFDLRGVLVWGLSFSGRDCGDAAADWFSDFLGKP 118
PLN02724 PLN02724
Molybdenum cofactor sulfurase
 4-261 1.60e-29

Molybdenum cofactor sulfurase


Pssm-ID: 215384 [Multi-domain]  Cd Length: 805  Bit Score: 119.97  E-value: 1.60e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285    4 LTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS-PVHDG-LHLTAPD-SSSAYVRF 80
Cdd:PLN02724 520 LKSITVYPIKSCAGFSVERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFiDLESGkLVVRAPRcDHKLEIPL 599

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285   81 AD--FATQDAPTEVWGTHFTARIAPEAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVP---------LSFADGYPYLL 149
Cdd:PLN02724 600 ESdsQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNTRVCRNRNPSHspcgddesrLSFANEGQFLL 679

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285  150 ANEASLRDLQQRC-----PASVKME--QFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPA 222
Cdd:PLN02724 680 ISEASVEDLNRRLatgqeDAKIRLDptRFRPNLVVSGGEAYAEDEWQSLSIGDAEFTVLGGCNRCQMINIDQETGLVNPS 759

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 15830285  223 GEPLKTLQSFRTAQdnGDVDFG----QNLIARNSGVIRVGDEV 261
Cdd:PLN02724 760 NEPLATLASYRRVK--GKILFGillrYEISDKRDQWIAVGSRV 800
Fdx COG0633
Ferredoxin [Energy production and conversion];
289-367 2.46e-20

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 84.13  E-value: 2.46e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285 289 ANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGD----DGTILCCSCVPKTA 364
Cdd:COG0633   2 PKVTFIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSDeeraAGSRLACQARPTSD 81


                ...
gi 15830285 365 LKL 367
Cdd:COG0633  82 LVV 84
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 290-367 4.46e-17

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 75.12  E-value: 4.46e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285 290 NVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDD----GTILCCSCVPKTAL 365
Cdd:cd00207   2 TINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEeaegGYVLACQTRVTDGL 81


                ..
gi 15830285 366 KL 367
Cdd:cd00207  82 VI 83
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
291-362 3.84e-14

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 66.78  E-value: 3.84e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15830285   291 VDIDWQGQAFRGN-NQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEV----TPLKKSAMGDDGTILCCSCVPK 362
Cdd:pfam00111   1 VTINGKGVTIEVPdGETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDqsdqSFLEDDELAAGYVVLACQTYPK 77
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
308-367 5.98e-13

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 63.98  E-value: 5.98e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15830285  308 LLEQLENQGIRIPYSCRAGICGSCRVQLLEGEV----TPLkksAMGDDGTILCCSCVPKTALKL 367
Cdd:PRK10713  22 LLAALESHNVAVEYQCREGYCGSCRTRLVAGQVdwiaEPL---AFIQPGEILPCCCRAKGDIEI 82
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 306-367 5.47e-09

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 52.84  E-value: 5.47e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15830285   306 QVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDD----GTILCCSCVPKTALKL 367
Cdd:TIGR02008  23 QYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDqmeaGYVLTCVAYPTSDCTI 88
 
Name Accession Description Interval E-value
YcbX COG3217
N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and ...
 1-264 2.69e-111

N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and metabolism, Defense mechanisms];


Pssm-ID: 442450 [Multi-domain]  Cd Length: 240  Bit Score: 324.45  E-value: 2.69e-111
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285   1 MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDG-LHLTAPDSSSAYVR 79
Cdd:COG3217   1 MGRVSRLYRYPVKSLAGEALESATLTAGGLPGDRRWALVDADGRFLTQRRHPRLALLRARLDEDGgLTLTAPGGESLTVD 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285  80 FADfatqdaptevwgthftarIAPEAINKWLSGFFSREVQLRWVGPQMTRrvkrhnTVPLSFADGYPYLLANEASLRDLQ 159
Cdd:COG3217  81 LDD------------------DAGDAAAAWLSEYLGRPVRLVRLPPESRR------GPPVGFADGYPVLLISTASLADLN 136

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285 160 QRCPASVKMEQFRPNLVVSGASAWEEDSW--KVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPagEPLKTLQSFRtaQD 237
Cdd:COG3217 137 ARLGAPVDMRRFRPNLVVDGLEPFAEDDWvgRRLRIGEVRLRVVKPCSRCVVTTVDPETGERDP--EPLRTLARYR--GA 212

                       250       260
                ....*....|....*....|....*..
gi 15830285 238 NGDVDFGQNLIARNSGVIRVGDEVEIL 264
Cdd:COG3217 213 DGHVDFGVNAIVLEGGTIRVGDEVEVL 239
MOSC_N pfam03476
MOSC N-terminal beta barrel domain; This domain is found to the N-terminus of pfam03473. The ...
 1-117 2.50e-45

MOSC N-terminal beta barrel domain; This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.


Pssm-ID: 281474  Cd Length: 118  Bit Score: 151.36  E-value: 2.50e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285     1 MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS-PVHDGLHLTAPDSSSAYVR 79
Cdd:pfam03476   1 MARVSSLYVYPIKSCRGESLSRAELTAAGLAWDRRFMVVDSDGKFVTARREPRLVLIRTTlDEDGGLTLTAPGMPDLSVP 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 15830285    80 FADFATQDAPTEVWGTHFTARIAPEAINKWLSGFFSRE 117
Cdd:pfam03476  81 LADNKFDLRGVLVWGLSFSGRDCGDAAADWFSDFLGKP 118
PLN02724 PLN02724
Molybdenum cofactor sulfurase
 4-261 1.60e-29

Molybdenum cofactor sulfurase


Pssm-ID: 215384 [Multi-domain]  Cd Length: 805  Bit Score: 119.97  E-value: 1.60e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285    4 LTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS-PVHDG-LHLTAPD-SSSAYVRF 80
Cdd:PLN02724 520 LKSITVYPIKSCAGFSVERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFiDLESGkLVVRAPRcDHKLEIPL 599

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285   81 AD--FATQDAPTEVWGTHFTARIAPEAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVP---------LSFADGYPYLL 149
Cdd:PLN02724 600 ESdsQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNTRVCRNRNPSHspcgddesrLSFANEGQFLL 679

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285  150 ANEASLRDLQQRC-----PASVKME--QFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPA 222
Cdd:PLN02724 680 ISEASVEDLNRRLatgqeDAKIRLDptRFRPNLVVSGGEAYAEDEWQSLSIGDAEFTVLGGCNRCQMINIDQETGLVNPS 759

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 15830285  223 GEPLKTLQSFRTAQdnGDVDFG----QNLIARNSGVIRVGDEV 261
Cdd:PLN02724 760 NEPLATLASYRRVK--GKILFGillrYEISDKRDQWIAVGSRV 800
Fdx COG0633
Ferredoxin [Energy production and conversion];
289-367 2.46e-20

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 84.13  E-value: 2.46e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285 289 ANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGD----DGTILCCSCVPKTA 364
Cdd:COG0633   2 PKVTFIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSDeeraAGSRLACQARPTSD 81


                ...
gi 15830285 365 LKL 367
Cdd:COG0633  82 LVV 84
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 290-367 4.46e-17

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 75.12  E-value: 4.46e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285 290 NVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDD----GTILCCSCVPKTAL 365
Cdd:cd00207   2 TINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEeaegGYVLACQTRVTDGL 81


                ..
gi 15830285 366 KL 367
Cdd:cd00207  82 VI 83
MOSC pfam03473
MOSC domain; The MOSC (MOCO sulfurase C-terminal) domain is a superfamily of beta-strand-rich ...
 138-262 2.83e-16

MOSC domain; The MOSC (MOCO sulfurase C-terminal) domain is a superfamily of beta-strand-rich domains identified in the molybdenum cofactor sulfurase and several other proteins from both prokaryotes and eukaryotes. These MOSC domains contain an absolutely conserved cysteine and occur either as stand-alone forms such as Swiss:P32157, or fused to other domains such as NifS-like catalytic domain in Molybdenum cofactor sulfurase. The MOSC domain is predicted to be a sulfur-carrier domain that receives sulfur abstracted by the pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulfur-metal clusters.


Pssm-ID: 460936  Cd Length: 116  Bit Score: 74.15  E-value: 2.83e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285   138 PLSFADGYPYLLANEASLRDLQQRCPAS-VKMEQFRPNLVVSGASaweedsWKVIRIGDVvFDVVKPCSRcifTTVSPek 216
Cdd:pfam03473   3 KHHGGDDKAVLLYSRESYDAWNAELGRGpLDPGRFRENLVVSGGT------WKEVCIGDR-FRIGGACLR---LEVTQ-- 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15830285   217 gqkhpAGEPLKTLQSfRTAQDNGD------VDFGQNLIARNSGVIRVGDEVE 262
Cdd:pfam03473  71 -----PREPCKTLAK-RFGERRVDkrfkgsGRFGWYLRVLEEGTVRVGDEVE 116
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
291-362 3.84e-14

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 66.78  E-value: 3.84e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15830285   291 VDIDWQGQAFRGN-NQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEV----TPLKKSAMGDDGTILCCSCVPK 362
Cdd:pfam00111   1 VTINGKGVTIEVPdGETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDqsdqSFLEDDELAAGYVVLACQTYPK 77
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
308-367 5.98e-13

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 63.98  E-value: 5.98e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15830285  308 LLEQLENQGIRIPYSCRAGICGSCRVQLLEGEV----TPLkksAMGDDGTILCCSCVPKTALKL 367
Cdd:PRK10713  22 LLAALESHNVAVEYQCREGYCGSCRTRLVAGQVdwiaEPL---AFIQPGEILPCCCRAKGDIEI 82
PTZ00038 PTZ00038
ferredoxin; Provisional
 308-363 1.66e-11

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 62.55  E-value: 1.66e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285  308 LLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDD----GTILCCSCVPKT 363
Cdd:PTZ00038 117 ILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEqlkkGYCLLCTCYPKS 176
petF CHL00134
ferredoxin; Validated
 303-363 5.31e-11

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 58.96  E-value: 5.31e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15830285  303 NNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDD----GTILCCSCVPKT 363
Cdd:CHL00134  22 PDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDqleaGFVLTCVAYPTS 86
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 306-367 5.47e-09

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 52.84  E-value: 5.47e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15830285   306 QVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDD----GTILCCSCVPKTALKL 367
Cdd:TIGR02008  23 QYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDqmeaGYVLTCVAYPTSDCTI 88
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 282-367 5.99e-09

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 56.80  E-value: 5.99e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285  282 NITQQPdanvdidwQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVT--PLKKSAMGDD----GTIL 355
Cdd:PRK07609   4 QVTLQP--------SGRQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEqgPHQASALSGEeraaGEAL 75

                         90
                 ....*....|..
gi 15830285  356 CCSCVPKTALKL 367
Cdd:PRK07609  76 TCCAKPLSDLVL 87
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 308-368 2.88e-07

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 51.63  E-value: 2.88e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15830285  308 LLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGD----DGTILCCSCVPKTALKLA 368
Cdd:PRK10684 268 LLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPaeiaQGYVLACSCHPQGDLVLA 332
PLN03136 PLN03136
Ferredoxin; Provisional
 308-363 4.82e-06

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 45.90  E-value: 4.82e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285  308 LLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGD----DGTILCCSCVPKT 363
Cdd:PLN03136  76 VLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDeqisEGYVLTCVAYPTS 135
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
308-359 4.91e-06

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 47.80  E-value: 4.91e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15830285  308 LLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDD----GTILCCSC 359
Cdd:PRK05713  19 LLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEkreqGWRLACQC 74
YiiM COG2258
N-hydroxylaminopurine reductase YiiM, contains MOSC domain [Nucleotide transport and ...
 147-264 4.60e-04

N-hydroxylaminopurine reductase YiiM, contains MOSC domain [Nucleotide transport and metabolism, Defense mechanisms];


Pssm-ID: 441859  Cd Length: 162  Bit Score: 40.54  E-value: 4.60e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830285 147 YLLANEaSLRDLQQRCPASVKMEQFRPNLVVSGasaWEEDSWKV---IRIGDVVFDVV---KPCSR-CIFTTVspekgqk 219
Cdd:COG2258  50 TLYAAE-HYDAWAAELGRDLPPGAFGENLTTEG---LDLSDLPIgdrLRIGEALLEVTqprKPCHKlEARLGG------- 118

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 15830285 220 hpAGEPLKTLQSFRTaqdngdvdfGQNLIARNSGVIRVGDEVEIL 264
Cdd:COG2258 119 --PGLAKAMCQMGRG---------GIYARVLEGGEVRAGDEVELL 152
COG3894 COG3894
Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain ...
 308-361 6.49e-04

Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain [Function unknown];


Pssm-ID: 443101 [Multi-domain]  Cd Length: 621  Bit Score: 41.71  E-value: 6.49e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15830285 308 LLEQLENQGIRIPYSCR-AGICGSCRVQLLEGEVTPLKKSAMG-------DDGTILCCSCVP 361
Cdd:COG3894  23 LLDAAREAGVDIDAPCGgRGTCGKCKVKVEEGEFSPVTEEERRllspeelAEGYRLACQARV 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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