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Conserved domains on  [gi|15830334|ref|NP_309107|]
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phage maintenance protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

type I toxin-antitoxin system Hok family toxin( domain architecture ID 10486807)

type I toxin-antitoxin system Hok family toxin similar to Hok, a small, toxic protein encoded on the parB (hok/sok) locus of plasmid R1, that mediates plasmid stabilization by killing plasmid-free cells

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HOK_GEF pfam01848
Hok/gef family;
26-66 2.05e-14

Hok/gef family;


:

Pssm-ID: 426473  Cd Length: 41  Bit Score: 60.08  E-value: 2.05e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 15830334   26 MLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAY 66
Cdd:pfam01848  1 ALVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Name Accession Description Interval E-value
HOK_GEF pfam01848
Hok/gef family;
26-66 2.05e-14

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 60.08  E-value: 2.05e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 15830334   26 MLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAY 66
Cdd:pfam01848  1 ALVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
PRK09738 PRK09738
small toxic polypeptide; Provisional
 20-67 2.78e-08

small toxic polypeptide; Provisional


Pssm-ID: 182055  Cd Length: 52  Bit Score: 44.78  E-value: 2.78e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 15830334  20 MKQQKAMLIALIViCLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAYE 67
Cdd:PRK09738  3 LPRSPLVWCVLIV-CLTLLIFTYLTRKSLCELRYRDGDREVAAFMAYE 49
 
Name Accession Description Interval E-value
HOK_GEF pfam01848
Hok/gef family;
26-66 2.05e-14

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 60.08  E-value: 2.05e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 15830334   26 MLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAY 66
Cdd:pfam01848  1 ALVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
PRK09738 PRK09738
small toxic polypeptide; Provisional
 20-67 2.78e-08

small toxic polypeptide; Provisional


Pssm-ID: 182055  Cd Length: 52  Bit Score: 44.78  E-value: 2.78e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 15830334  20 MKQQKAMLIALIViCLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAYE 67
Cdd:PRK09738  3 LPRSPLVWCVLIV-CLTLLIFTYLTRKSLCELRYRDGDREVAAFMAYE 49
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
23-65 3.41e-07

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 42.22  E-value: 3.41e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15830334  23 QKAMLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEVAVFTA 65
Cdd:PRK09759  3 QKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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