NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1447699368|ref|NP_309140|]
View 

phage minor tail protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_tail_T super family cl05636
Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the ...
 1-89 8.77e-42

Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerization.


The actual alignment was detected with superfamily member TIGR01715:

Pssm-ID: 297128  Cd Length: 95  Bit Score: 133.84  E-value: 8.77e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699368   1 MGRPDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTYAVLSLFFCdPDMHPSDFSLLVprheEEQVERPDEDK 80
Cdd:TIGR01715   1 FRRPDWRAMLAEMSSTELGEWARFFRTNSFSDALLDAEFSTLKYAVSSLVTG-PEMDASDFSLLT----EPQTERPDTDD 75


                  ....*....
gi 1447699368  81 MLMQKAAGL 89
Cdd:TIGR01715  76 MLMRKAAGI 84
 
Name Accession Description Interval E-value
phage_lam_T TIGR01715
phage tail assembly protein T; This model represents a translation of the T gene in phage ...
 1-89 8.77e-42

phage tail assembly protein T; This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273771  Cd Length: 95  Bit Score: 133.84  E-value: 8.77e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699368   1 MGRPDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTYAVLSLFFCdPDMHPSDFSLLVprheEEQVERPDEDK 80
Cdd:TIGR01715   1 FRRPDWRAMLAEMSSTELGEWARFFRTNSFSDALLDAEFSTLKYAVSSLVTG-PEMDASDFSLLT----EPQTERPDTDD 75


                  ....*....
gi 1447699368  81 MLMQKAAGL 89
Cdd:TIGR01715  76 MLMRKAAGI 84
Phage_tail_T pfam06223
Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the ...
 1-90 1.24e-35

Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerization.


Pssm-ID: 283804  Cd Length: 100  Bit Score: 118.42  E-value: 1.24e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699368   1 MGRPDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTYAVLSLfFCDPDMHPSDFSLLVPRheeEQVERPDEDK 80
Cdd:pfam06223   6 FRRPDWRAMLAEMSSTELGEWADFFSTNSFSDALLDAEFSTLKYTVSGL-VTGPEMDADDFSLLTAP---EADEEPTDDE 81

                          90
                  ....*....|
gi 1447699368  81 mLMQKAAGLA 90
Cdd:pfam06223  82 -LMQKAAGIT 90
 
Name Accession Description Interval E-value
phage_lam_T TIGR01715
phage tail assembly protein T; This model represents a translation of the T gene in phage ...
 1-89 8.77e-42

phage tail assembly protein T; This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273771  Cd Length: 95  Bit Score: 133.84  E-value: 8.77e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699368   1 MGRPDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTYAVLSLFFCdPDMHPSDFSLLVprheEEQVERPDEDK 80
Cdd:TIGR01715   1 FRRPDWRAMLAEMSSTELGEWARFFRTNSFSDALLDAEFSTLKYAVSSLVTG-PEMDASDFSLLT----EPQTERPDTDD 75


                  ....*....
gi 1447699368  81 MLMQKAAGL 89
Cdd:TIGR01715  76 MLMRKAAGI 84
Phage_tail_T pfam06223
Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the ...
 1-90 1.24e-35

Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerization.


Pssm-ID: 283804  Cd Length: 100  Bit Score: 118.42  E-value: 1.24e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699368   1 MGRPDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTYAVLSLfFCDPDMHPSDFSLLVPRheeEQVERPDEDK 80
Cdd:pfam06223   6 FRRPDWRAMLAEMSSTELGEWADFFSTNSFSDALLDAEFSTLKYTVSGL-VTGPEMDADDFSLLTAP---EADEEPTDDE 81

                          90
                  ....*....|
gi 1447699368  81 mLMQKAAGLA 90
Cdd:pfam06223  82 -LMQKAAGIT 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH