|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09841 |
PRK09841 |
tyrosine-protein kinase; |
1-726 |
0e+00 |
|
tyrosine-protein kinase;
Pssm-ID: 182106 [Multi-domain] Cd Length: 726 Bit Score: 1383.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 1 MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMI 80
Cdd:PRK09841 1 MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 81 PNSSPESAPEIQLLQSRMILGKTIAELNLRDMVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN 160
Cdd:PRK09841 81 PNSSPESAPEIQLLQSRMILGKTIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 161 GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDPQ 240
Cdd:PRK09841 161 GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDPQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 241 LITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQL 320
Cdd:PRK09841 241 LITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 321 NELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISK 400
Cdd:PRK09841 321 NELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 401 SSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLDKRT 480
Cdd:PRK09841 401 SSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLDKRT 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 481 RLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSD 560
Cdd:PRK09841 481 RLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSD 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 561 QKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDH 640
Cdd:PRK09841 561 QKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDH 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 641 YDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGY 720
Cdd:PRK09841 641 YDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGY 720
|
....*.
gi 15830391 721 SYSEKE 726
Cdd:PRK09841 721 SYSEKE 726
|
|
| PRK11519 |
PRK11519 |
tyrosine-protein kinase Wzc; |
1-708 |
0e+00 |
|
tyrosine-protein kinase Wzc;
Pssm-ID: 183173 [Multi-domain] Cd Length: 719 Bit Score: 928.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 1 MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMI 80
Cdd:PRK11519 1 MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 81 PNSSPESAPEIQLLQSRMILGKTIAELNLRDMVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQlNGQDQQLTLTVGEN 160
Cdd:PRK11519 81 ANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPK-EMADQVFTLNVLDD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 161 GHYTLE-GEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDP 239
Cdd:PRK11519 160 KNYQLSsDGGFSARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 240 QLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQ 319
Cdd:PRK11519 240 EQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 320 LNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399
Cdd:PRK11519 320 LNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKIT 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 400 KSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLDKR 479
Cdd:PRK11519 400 EASTVGDVRIVDPAITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKAR 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 480 TRlrkknLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQS 559
Cdd:PRK11519 480 DS-----VKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQT 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 560 DQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWAND 639
Cdd:PRK11519 555 NKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASK 634
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15830391 640 HYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRAS 708
Cdd:PRK11519 635 NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRAS 703
|
|
| eps_transp_fam |
TIGR01005 |
exopolysaccharide transport protein family; The model describes the exopolysaccharide ... |
15-701 |
4.30e-115 |
|
exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273391 [Multi-domain] Cd Length: 764 Bit Score: 364.43 E-value: 4.30e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 15 ENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKqgnaiLSGLSDMIPNSS------PESA 88
Cdd:TIGR01005 1 DGEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDN-----LNKAAEEEGDPSnlfdldTDAA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 89 PEIQLLQSRMILGKTIAELNLRD---MVEQKYFPI----------VGR----GWARLTKE--KPGELAISWMHIPQ-LNG 148
Cdd:TIGR01005 76 AAIEILKSGELAGKAVDKLHLSEnakILNPPRFPVdligawiksaAGLfsepGGFDLGEEaaGNERIDKAAADIPEaLAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 149 QdqQLTLTVGENGHYTLEGEEF--TVNGMVGQRLEKD----GVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSE 222
Cdd:TIGR01005 156 E--PFKLISLGAGAFRLEDKLLaaPIAGGVAEALEADqliaNFEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAE 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 223 RSKESGML-ELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVD 301
Cdd:TIGR01005 234 KAAQGEIIgEAQLADLNPALIAAIADQAAAEARADNIKRIADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFD 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 302 LNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKR-QTLEQERKRLNKRVSAMPSTQQEVLRLSRDVE 380
Cdd:TIGR01005 314 LSDEFGADHPEAVCSAPSLQELKAKIAEELQQFTASHKGEQAIAQQIeESLRGKINGIAGKLKDAPEIEQDLRELEQDAA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 381 AGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLE 460
Cdd:TIGR01005 394 ADKELYESLLGDMEQAKLQKAFKIAKARLIDEAAVPEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIE 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 461 EH-GISVYATIPMSE-WLDKRTRL--RKKNLFSNQQRHRTKNIPF-----LAVDNPADSAVEAVRALRTSLHFAMMETEN 531
Cdd:TIGR01005 474 EHlGHRSLATVPLLDtQMDKKAQLthAHFGSVKRHDEAVDDTMPFqllarIVPDAPRSTFAEAFRNAKLACDFALADAEN 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 532 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDV 611
Cdd:TIGR01005 554 NLIAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAGEASIEAGIHRDQRPGLAF 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 612 ITRGQV---PPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRL 688
Cdd:TIGR01005 634 IAAGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQE 713
|
730
....*....|...
gi 15830391 689 EQAGVNIKGAILN 701
Cdd:TIGR01005 714 PHANSDVLGVIFN 726
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
5-708 |
3.33e-93 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 304.63 E-value: 3.33e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 5 NMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSS 84
Cdd:COG3206 2 NESSSAPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSLSASDS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 85 PeSAPEIQLLQSRMILGKTIAELNLRDMVEQkyfpivgrgwarltkekpgelaiswmhipqlngqdqqltltvgenghyt 164
Cdd:COG3206 82 P-LETQIEILKSRPVLERVVDKLNLDEDPLG------------------------------------------------- 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 165 legeeftvngmvgqrlekdgvaltiadikakpgtqfvlSQRTELEAINALQETFTVsERSKESGMLELTMTGDDPQLITR 244
Cdd:COG3206 112 --------------------------------------EEASREAAIERLRKNLTV-EPVKGSNVIEISYTSPDPELAAA 152
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 245 ILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLN--- 321
Cdd:COG3206 153 VANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAear 232
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 322 -----------------------------------------ELTFREAEISQLYKKDHPTYRALLEKR------------ 348
Cdd:COG3206 233 aelaeaearlaalraqlgsgpdalpellqspviqqlraqlaELEAELAELSARYTPNHPDVIALRAQIaalraqlqqeaq 312
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 349 -----------------QTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIID 411
Cdd:COG3206 313 rilasleaelealqareASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVID 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 412 PAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSnq 491
Cdd:COG3206 393 PAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKSKRERRRARLALLL-- 470
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 492 qrhrtknipfLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571
Cdd:COG3206 471 ----------LAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLL 540
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 572 RGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPM 651
Cdd:COG3206 541 LLLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLL 620
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 15830391 652 LAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRAS 708
Cdd:COG3206 621 AALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYY 677
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
513-702 |
6.78e-76 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 242.48 E-value: 6.78e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 513 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLA 592
Cdd:cd05387 1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 593 GKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVAR 672
Cdd:cd05387 81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160
|
170 180 190
....*....|....*....|....*....|
gi 15830391 673 FGLNTAKEVSLSMQRLEQAGVNIKGAILNG 702
Cdd:cd05387 161 AGKTRRREVKEALERLEQAGAKVLGVVLNK 190
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
511-708 |
8.50e-60 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 203.49 E-value: 8.50e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 511 AVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEY 590
Cdd:COG0489 72 LLLLALALLLLLLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 591 LAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLV 670
Cdd:COG0489 152 LAGEASLEDVIQPTEVEGLDVLPAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLV 231
|
170 180 190
....*....|....*....|....*....|....*...
gi 15830391 671 ARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRAS 708
Cdd:COG0489 232 VRPGKTALDDVRKALEMLEKAGVPVLGVVLNMVCPKGE 269
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
513-703 |
2.85e-46 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 163.38 E-value: 2.85e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 513 EAVRALRTSLHFAMmeTENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH-GLSEYL 591
Cdd:TIGR01007 1 EYYNAIRTNIQFSG--AEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKItGLTNFL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 592 AGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVA 671
Cdd:TIGR01007 79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158
|
170 180 190
....*....|....*....|....*....|..
gi 15830391 672 RFGLNTAKEVSLSMQRLEQAGVNIKGAILNGV 703
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKV 190
|
|
| GNVR |
pfam13807 |
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ... |
367-448 |
4.83e-36 |
|
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.
Pssm-ID: 433492 [Multi-domain] Cd Length: 82 Bit Score: 130.41 E-value: 4.83e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 367 STQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLAR 446
Cdd:pfam13807 1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80
|
..
gi 15830391 447 AM 448
Cdd:pfam13807 81 RA 82
|
|
| EpsG |
TIGR03029 |
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are ... |
502-701 |
4.41e-35 |
|
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Pssm-ID: 132074 [Multi-domain] Cd Length: 274 Bit Score: 134.61 E-value: 4.41e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 502 LAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTV 581
Cdd:TIGR03029 74 IAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 582 SNEHGLSEYLAGKDELnKVIQHFGK-GGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVV 660
Cdd:TIGR03029 154 SEQRGLSDILAGRSDL-EVITHIPAlENLSVLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPSAEHSSDAQIV 232
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 15830391 661 GRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILN 701
Cdd:TIGR03029 233 ATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLN 273
|
|
| Wzz |
pfam02706 |
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ... |
16-106 |
4.76e-28 |
|
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.
Pssm-ID: 460658 [Multi-domain] Cd Length: 90 Bit Score: 108.14 E-value: 4.76e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 16 NEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESApEIQLLQ 95
Cdd:pfam02706 1 DEIDLIELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVPQKKGEAGSLLGSDLQAGLQLAST-EIEILK 79
|
90
....*....|.
gi 15830391 96 SRMILGKTIAE 106
Cdd:pfam02706 80 SRDVLEKVIDE 90
|
|
| WzzB |
COG3765 |
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope ... |
1-451 |
9.93e-17 |
|
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442979 [Multi-domain] Cd Length: 364 Bit Score: 82.33 E-value: 9.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 1 MTTKNMN----TPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADtlvqveqkqgnAILsgl 76
Cdd:COG3765 1 MSSEESKqlypNQYPPSQDDEIDLFELLRTLWQGKLWIIGITLLFALLALVYAFLLPQKWTST-----------AIV--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 77 sdmipnsspeSAPEIQLLQSrmiLGKTIAELNLRDMVEQKYFPIVGRGWARLTKekpgelaiswmhipQLNGQDQQltlt 156
Cdd:COG3765 67 ----------DPPTVNELGG---YYSQRQFLRNLDVKSVDPPVISSELFNEFIK--------------QLSSYDLR---- 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 157 vgenghytlegEEFTVNGMVGQRLEKDgvaltiaDIKAKPGtqfvlsqrteleAINALQETFTVSERSKESGMLE----- 231
Cdd:COG3765 116 -----------REFLLQSDYYKQLQEG-------DEKEDAA------------LLDELINNISITPPDDKKKSSPytnys 165
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 232 LTMTGDDPQLITRIL-------NSIANNYLQQNIARQAAQDSQSLEflqrqlpevrSELDQAEEKLNVYRQQRdsvdlnL 304
Cdd:COG3765 166 VSFTAETPEDAQQLLrgyidfaNQRVLKELNEELQGAIAARLQSLK----------AQIKRLEEVAKAQRQRR------I 229
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 305 EAkavLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLeKRQTLEQERKRLNKRvsampstqqevlrlsRDVEAGRA 384
Cdd:COG3765 230 ER---LKYALKIAQAAGIKKPVYSNGQTPAVKLDPSYLFLL-GTDALQAELEILKAR---------------GDDYPLNA 290
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 385 VYLQLLNRQQEL---SISKSSAIGnVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRR 451
Cdd:COG3765 291 DLYQLQAQLAQLnalPIDDVGFQP-FRYLRTPEEPVKKDKPKRALILVLGALLGGMLGVGVVLIRHALRS 359
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
340-572 |
1.01e-16 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 81.65 E-value: 1.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 340 TYRALLEKRQTLEQERKRLN---------KRVSAMPSTQQEVLRLS-RDVEAGRAVylQLLNRQQELSISKSSAI---GN 406
Cdd:COG3944 72 TYAELLKSPAVLEEVIDELGldlspeelaKKISVTSPPDTQVITITvTDTDPERAA--DIANAVAEVFAEEVKELmkvDN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 407 VRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHgisvyatipmsewLDKRTRLRKKN 486
Cdd:COG3944 150 VTVLDPATVPASPVSPNPKLNLAIGLVLGLLLGVGLAFLRELLDTTIRSEEDIERL-------------LGLLLGGAVPA 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 487 lfsnqqrhRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566
Cdd:COG3944 217 --------ARSARPLLLLLADASPRAAAARRRRRNLLFALAAVDARTVVVVSSSLSEGKSTTTAALALALAAAAAGVVLV 288
|
....*.
gi 15830391 567 DADLRR 572
Cdd:COG3944 289 LADLDR 294
|
|
| pepcterm_ChnLen |
TIGR03007 |
polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Members of this ... |
207-488 |
2.49e-16 |
|
polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Pssm-ID: 274386 [Multi-domain] Cd Length: 498 Bit Score: 82.41 E-value: 2.49e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 207 ELEA-INALQETFTVSERSKEsGMLELTMTGDDPQLITRILNSIANNYLQQNIArQAAQDSQS-LEFLQRQLPEVRSELD 284
Cdd:TIGR03007 101 QLEAlITKLRKNISISLAGRD-NLFTISYEDKDPELAKDVVQTLLTIFVEETLG-SKRQDSDSaQRFIDEQIKTYEKKLE 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 285 QAEEKLNVYRQ------------------------------------QRDSV--DLNLEAKAVLEQIVNV----DNQLNE 322
Cdd:TIGR03007 179 AAENRLKAFKQenggilpdqegdyyseiseaqeeleaarlelneaiaQRDALkrQLGGEEPVLLAGSSVAnselDGRIEA 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 323 LTFREAEISQLYKKDHP----TYR--ALLEKRQTLEQERK---------------------------------------- 356
Cdd:TIGR03007 259 LEKQLDALRLRYTDKHPdviaTKReiAQLEEQKEEEGSAKnggpergeianpvyqqlqielaeaeaeiaslearvaelta 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 357 ---RLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS--SAIGNV--RIIDPAVTQPQPVKPKKALNVV 429
Cdd:TIGR03007 339 rieRLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQmeVQDKAVsfRIIDPPIVPSKPSGPNRPLLML 418
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 430 LGFILGLFISVGAVLARAMLRRGVEAPEQLEE-HGISVYATIPMSEWLDKRTRLRKKNLF 488
Cdd:TIGR03007 419 AGLLGGLGAGIGLAFLLSQLRPTVRSVRDLRElTGLPVLGVIPMIATPEERRRRRRRLAA 478
|
|
| FlhG |
COG0455 |
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ... |
547-660 |
2.33e-13 |
|
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440223 [Multi-domain] Cd Length: 230 Bit Score: 69.92 E-value: 2.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 547 FVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHfGKGGFDVITRGQVPPNPSELLM 626
Cdd:COG0455 1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEADLEDAIVQ-GPGGLDVLPGGSGPAELAELDP 79
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 15830391 627 RDRMRQLLEWANDHYDLVIVDTPP--------MLAVSDAAVV 660
Cdd:COG0455 80 EERLIRVLEELERFYDVVLVDTGAgisdsvllFLAAADEVVV 121
|
|
| CpaE |
COG4963 |
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ... |
500-707 |
7.44e-12 |
|
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443989 [Multi-domain] Cd Length: 358 Bit Score: 67.45 E-value: 7.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 500 PFLAVDNPADSAVEAVRALRTSLHfAMMETENNILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFIDADLRRGYSHNL 578
Cdd:COG4963 72 AALLADVLPLSPDELRAALARLLD-PGAARRGRVIAVVGAKGGVGATTLAVNLAWALAREsGRRVLLVDLDLQFGDVALY 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 579 FTVSNEHGLSEYLAGKDELNK------VIQHfgKGGFDVITrGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPML 652
Cdd:COG4963 151 LDLEPRRGLADALRNPDRLDEtlldraLTRH--SSGLSVLA-APADLERAEEVSPEAVERLLDLLRRHFDYVVVDLPRGL 227
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 15830391 653 AVSDAAVVGRSvGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGA--ILNGVIKRA 707
Cdd:COG4963 228 NPWTLAALEAA-DEVVLVTEPDLPSLRNAKRLLDLLRELGLPDDKVrlVLNRVPKRG 283
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
534-710 |
2.01e-11 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 64.29 E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 534 LMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE----HGLSEYLAGKDELNKVIQ--HFGKG 607
Cdd:pfam01656 1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDPQSNNSSVEGLEGDIapalQALAEGLKGRVNLDPILLkeKSDEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 608 GFDVITRGQVPPNPSELLMRD----RMRQLLEWANDHYDLVIVDTPPMLAVSdaavVGRSVGTSLLVAR------FGLNT 677
Cdd:pfam01656 81 GLDLIPGNIDLEKFEKELLGPrkeeRLREALEALKEDYDYVIIDGAPGLGEL----LRNALIAADYVIIplepevILVED 156
|
170 180 190
....*....|....*....|....*....|....*..
gi 15830391 678 AKEVSLSMQRL----EQAGVNIKGAILNGVIKRASTA 710
Cdd:pfam01656 157 AKRLGGVIAALvggyALLGLKIIGVVLNKVDGDNHGK 193
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
543-660 |
7.98e-11 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 62.95 E-value: 7.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 543 SGKTFVSSTLAAVIAQSDQKVLFIDAD----LRRGYSHNLFTVsnEHGLSEYLAGKDELNKVIQHFGKGGFDVItrgqvP 618
Cdd:COG1192 13 VGKTTTAVNLAAALARRGKRVLLIDLDpqgnLTSGLGLDPDDL--DPTLYDLLLDDAPLEDAIVPTEIPGLDLI-----P 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 15830391 619 PNPS------ELLMRD----RMRQLLEWANDHYDLVIVDTPPMLAV-SDAAVV 660
Cdd:COG1192 86 ANIDlagaeiELVSRPgrelRLKRALAPLADDYDYILIDCPPSLGLlTLNALA 138
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
543-652 |
1.48e-09 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 57.59 E-value: 1.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 543 SGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSN--EHGLSEYLAGKDELNKVIQHFGKGGFDVItrgqvppn 620
Cdd:pfam13614 13 VGKTTTSVNLAAALAKKGKKVLLIDLDPQGNATSGLGIDKNnvEKTIYELLIGECNIEEAIIKTVIENLDLI-------- 84
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 15830391 621 PSELLMRD-------------RMRQLLEWANDHYDLVIVDTPPML 652
Cdd:pfam13614 85 PSNIDLAGaeieligienrenILKEALEPVKDNYDYIIIDCPPSL 129
|
|
| FlhG-like |
cd02038 |
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ... |
544-650 |
1.55e-09 |
|
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.
Pssm-ID: 349758 [Multi-domain] Cd Length: 230 Bit Score: 58.73 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 544 GKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHfGKGGFDVITRGQVPPNPSE 623
Cdd:cd02038 13 GKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLKGRVSLEDIIVE-GPEGLDIIPGGSGMEELAN 91
|
90 100
....*....|....*....|....*....
gi 15830391 624 L--LMRDRMRQLLEWANDHYDLVIVDTPP 650
Cdd:cd02038 92 LdpEQKAKLIEELSSLESNYDYLLIDTGA 120
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
17-109 |
1.02e-08 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 57.38 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 17 EIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSP-ESAPEIqlLQ 95
Cdd:COG3944 1 EMDLREYLRILRRRWWLILLLTLLGALAALASSFLITPVYQASTTLLVSTSSGSDASDLYQGIQTAQQLvNTYAEL--LK 78
|
90
....*....|....
gi 15830391 96 SRMILGKTIAELNL 109
Cdd:COG3944 79 SPAVLEEVIDELGL 92
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
250-375 |
3.92e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 3.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 250 ANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNL--EAKAVLEQIVNVDNQLNELTFRE 327
Cdd:COG4913 321 LREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLpaSAEEFAALRAEAAALLEALEEEL 400
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 15830391 328 AEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRL 375
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
|
| minD_arch |
TIGR01969 |
cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD ... |
544-703 |
1.33e-06 |
|
cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Pssm-ID: 131024 [Multi-domain] Cd Length: 251 Bit Score: 50.50 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 544 GKTFVSSTLAAVIAQSDQKVLFIDADLRRGyshNLFTVSNEHG----LSEYLAGKDELNKVIqHFGKGGFDVItrgqvPP 619
Cdd:TIGR01969 13 GKTTITANLGVALAKLGKKVLALDADITMA---NLELILGMEDkpvtLHDVLAGEADIKDAI-YEGPFGVKVI-----PA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 620 NPS-ELLMR---DRMRQLLEWANDHYDLVIVDTPPMLAVSdaAVVGRSVGTSLLVAR----FGLNTAKEVSLSmqrLEQA 691
Cdd:TIGR01969 84 GVSlEGLRKadpDKLEDVLKEIIDDTDFLLIDAPAGLERD--AVTALAAADELLLVVnpeiSSITDALKTKIV---AEKL 158
|
170
....*....|..
gi 15830391 692 GVNIKGAILNGV 703
Cdd:TIGR01969 159 GTAILGVVLNRV 170
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
227-450 |
1.50e-06 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 51.00 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 227 SGMLELTMTGDDPQLITRILNSIannyLQQ------NIARQAAQDsqsleflqrQLPEVRSELDQAEEKLNV-------Y 293
Cdd:COG3524 137 SGIITLEVRAFDPEDAQAIAEAL----LAEseelvnQLSERARED---------AVRFAEEEVERAEERLRDareallaF 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 294 RQQRDSVDLNLEAKAVLEQIVNVDNQLNELtfrEAEISQL---YKKDHPTYRALLEKRQTLEQERKRLNKRV------SA 364
Cdd:COG3524 204 RNRNGILDPEATAEALLQLIATLEGQLAEL---EAELAALrsyLSPNSPQVRQLRRRIAALEKQIAAERARLtgasggDS 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 365 MPSTQQEVLRLSRDVEAGRAVYLQLL----------NRQQeLSISkssaignvRIIDPavTQPQ-PVKPKKALNVVLGFI 433
Cdd:COG3524 281 LASLLAEYERLELEREFAEKAYTSALaaleqarieaARQQ-RYLA--------VIVQP--TLPDeALYPRRLYNILLVFL 349
|
250
....*....|....*..
gi 15830391 434 LGLFISVGAVLARAMLR 450
Cdd:COG3524 350 ILLLLYGIGSLLVASIR 366
|
|
| CpaE-like |
cd03111 |
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ... |
533-707 |
1.51e-05 |
|
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Pssm-ID: 349765 [Multi-domain] Cd Length: 235 Bit Score: 46.89 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 533 ILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLA-----GKDELNKVIQHFgK 606
Cdd:cd03111 2 VVAVVGAKGGVGASTLAVNLAQELAQrAKDKVLLIDLDLPFGDLGLYLNLRPDYDLADVIQnldrlDRTLLDSAVTRH-S 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 607 GGFDVITRgqvpPNPSELLMR---DRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVgRSVGTSLLVARFGLNTAKEVSL 683
Cdd:cd03111 81 SGLSLLPA----PQELEDLEAlgaEQVDKLLQVLRAFYDHIIVDLGHFLDEVTLAVL-EAADEILLVTQQDLPSLRNARR 155
|
170 180
....*....|....*....|....*.
gi 15830391 684 SMQRLEQAGVNIKGA--ILNGVIKRA 707
Cdd:cd03111 156 LLDSLRELEGSSDRLrlVLNRYDKKS 181
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
259-395 |
2.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 259 ARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDsvDLNLEAKAVLEQIVNVD-NQLNELtfrEAEIsqlykkd 337
Cdd:COG4913 280 ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLD--ALREELDELEAQIRGNGgDRLEQL---EREI------- 347
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15830391 338 hptyRALLEKRQTLEQERKRLNKRVSAM----PSTQQEVLRLSRDVEAGRAVYLQLLNRQQE 395
Cdd:COG4913 348 ----ERLERELEERERRRARLEALLAALglplPASAEEFAALRAEAAALLEALEEELEALEE 405
|
|
| AAA_26 |
pfam13500 |
AAA domain; This domain is found in a number of proteins involved in cofactor biosynthesis ... |
534-703 |
5.58e-04 |
|
AAA domain; This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif.
Pssm-ID: 433259 [Multi-domain] Cd Length: 198 Bit Score: 41.86 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 534 LMITGATPDSGKTFVSSTLAAVIAQSDQKVLF---IDADLRRGyshnlfTVSNehgLSEYLAGKDELNKVIQHFGkggFD 610
Cdd:pfam13500 3 LFVTGTDTGVGKTVVSLGLARALKRRGVKVGYwkpVQTGLVED------GDSE---LVKRLLGLDQSYEDPEPFR---LS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 611 vitrgqvPPNPSELLMRDRMRQL-LEWANDH----YDLVIV------DTPPMLAVSDAAVVGR---SVgtsLLVARFGLN 676
Cdd:pfam13500 71 -------APLSPHLAARQEGVTIdLEKIIYElpadADPVVVegagglLVPINEDLLNADIAANlglPV---ILVARGGLG 140
|
170 180
....*....|....*....|....*..
gi 15830391 677 TAKEVSLSMQRLEQAGVNIKGAILNGV 703
Cdd:pfam13500 141 TINHTLLTLEALRQRGIPVLGVILNGV 167
|
|
| PRK15471 |
PRK15471 |
chain length determinant protein WzzB; Provisional |
1-62 |
5.65e-04 |
|
chain length determinant protein WzzB; Provisional
Pssm-ID: 185368 [Multi-domain] Cd Length: 325 Bit Score: 42.81 E-value: 5.65e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15830391 1 MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLV 62
Cdd:PRK15471 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAVGYLAVAKEKWTSTAII 62
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
258-381 |
5.65e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKd 337
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQ- 693
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15830391 338 hptYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEA 381
Cdd:COG4913 694 ---LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD 734
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
260-453 |
5.87e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 260 RQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY---KK 336
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLeelEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 337 DHPTYRALLEKRQTLEQERKRLNKRVSAM-----PSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSA---IGNVR 408
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEELleqlsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELeeeLEQLE 233
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 15830391 409 IIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGV 453
Cdd:COG4717 234 NELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGV 278
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
259-479 |
6.67e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 259 ARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDsvdlnlEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDH 338
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEE------ELEELEAELAELQEELEELLEQLSLATEEELQDL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 339 P-TYRALLEKRQTLEQERKRLnkrvsampstQQEVLRLSRDVEAGRAVyLQLLNRQQELSISKSSAIGNVRIIDPAVTQP 417
Cdd:COG4717 198 AeELEELQQRLAELEEELEEA----------QEELEELEEELEQLENE-LEAAALEERLKEARLLLLIAAALLALLGLGG 266
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15830391 418 QPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLDKR 479
Cdd:COG4717 267 SLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAL 328
|
|
| PRK10381 |
PRK10381 |
LPS O-antigen length regulator; Provisional |
1-51 |
1.27e-03 |
|
LPS O-antigen length regulator; Provisional
Pssm-ID: 182422 [Multi-domain] Cd Length: 377 Bit Score: 41.59 E-value: 1.27e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 1 MTTKNMNTPPG---------STQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLL 51
Cdd:PRK10381 1 MSSLNIKQNSDahfpdyplaSPSNNEIDLFELISVLWKAKKTIIAITFAFACAGLLISFI 60
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
231-361 |
1.70e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 231 ELTMTGDDPQLITRIlnsiannylqqniaRQAAQDSQSLeflQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLeakavl 310
Cdd:pfam05557 368 ELTMSNYSPQLLERI--------------EEAEDMTQKM---QAHNEEMEAQLSVAEEELGGYKQQAQTLEREL------ 424
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 15830391 311 eQIVNVDNQLNELTFREAEISQLYKKDhptyrallekrQTLEQERKRLNKR 361
Cdd:pfam05557 425 -QALRQQESLADPSYSKEEVDSLRRKL-----------ETLELERQRLREQ 463
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
249-396 |
1.73e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 249 IANNYLQQNIARQAAQDS--QSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFR 326
Cdd:TIGR00618 240 QSHAYLTQKREAQEEQLKkqQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSK 319
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 327 EAEISQLYKKdhptYRALLEKRQTLEQERKRLNKRVSampstQQEVLRLSRDVEAGRavyLQLLNRQQEL 396
Cdd:TIGR00618 320 MRSRAKLLMK----RAAHVKQQSSIEEQRRLLQTLHS-----QEIHIRDAHEVATSI---REISCQQHTL 377
|
|
| CooC |
COG3640 |
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, ... |
543-672 |
2.13e-03 |
|
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442857 [Multi-domain] Cd Length: 249 Bit Score: 40.54 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 543 SGKTFVSSTLAAVIAQSDQKVLFIDAD----LrrgysHNLFTVSNEHGLSEYLAGKDEL-------------------NK 599
Cdd:COG3640 11 VGKTTLSALLARYLAEKGKPVLAVDADpnanL-----AEALGLEVEADLIKPLGEMRELikertgapgggmfklnpkvDD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 600 VIQHFG--KGGFDVITRGQV---------PPNPselLMRDRMRQLLEwanDHYDLVIVDTPP---------------MLA 653
Cdd:COG3640 86 IPEEYLveGDGVDLLVMGTIeeggsgcycPENA---LLRALLNHLVL---GNYEYVVVDMEAgiehlgrgtaegvdlLLV 159
|
170
....*....|....*....
gi 15830391 654 VSDAAVvgRSVGTSLLVAR 672
Cdd:COG3640 160 VSEPSR--RSIETARRIKE 176
|
|
| PRK11638 |
PRK11638 |
ECA polysaccharide chain length modulation protein; |
15-58 |
2.24e-03 |
|
ECA polysaccharide chain length modulation protein;
Pssm-ID: 236943 [Multi-domain] Cd Length: 342 Bit Score: 40.80 E-value: 2.24e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 15830391 15 ENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQA 58
Cdd:PRK11638 7 ENELDIRGLCRTLWAGKLWIIGMALLFALIALGYSFLARQEWSA 50
|
|
| PRK10381 |
PRK10381 |
LPS O-antigen length regulator; Provisional |
389-460 |
3.73e-03 |
|
LPS O-antigen length regulator; Provisional
Pssm-ID: 182422 [Multi-domain] Cd Length: 377 Bit Score: 40.43 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 389 LLNRQQELSISKSSAIGNVRIIdPAVTQPQP---VK---PKKALNVVLGFILGLFISVGAVLARAMLR---RGVEAPEQL 459
Cdd:PRK10381 298 LRNRQYYVEQLKKLNINDVNFT-PFKYQLSPslpVKkdgPGKALIVILAALIGGMLACGFVLLRHAMRsrkQDLMLADHL 376
|
.
gi 15830391 460 E 460
Cdd:PRK10381 377 V 377
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
532-569 |
4.95e-03 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 37.41 E-value: 4.95e-03
10 20 30
....*....|....*....|....*....|....*...
gi 15830391 532 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569
Cdd:cd01983 1 RVIAVTGGKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
269-362 |
5.53e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830391 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQ----IVNVDNQLNELTFREAEISQLyKKDHPTYRAL 344
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEyswdEIDVASAEREIAELEAELERL-DASSDDLAAL 690
|
90
....*....|....*...
gi 15830391 345 LEKRQTLEQERKRLNKRV 362
Cdd:COG4913 691 EEQLEELEAELEELEEEL 708
|
|
| |
