NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15830598|ref|NP_309371|]
View 

hypothetical protein ECs_1344 [Escherichia coli O157:H7 str. Sakai]

Protein Classification

DUF4236 domain-containing protein( domain architecture ID 13854444)

DUF4236 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4236 pfam14020
Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. ...
 3-56 6.46e-23

Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 69 and 402 amino acids in length.


:

Pssm-ID: 433649  Cd Length: 55  Bit Score: 90.70  E-value: 6.46e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15830598     3 FRFRKSINIIPGVRLNLSNGAPSLSVGPRGASVSFGSR-GTYANLGLPGTGLSYR 56
Cdd:pfam14020   1 FRFRKSIKIGPGVRLNLSKSGISVSVGVRGARVTVGARgGVYTTVGIPGTGLSYR 55
HrpE_YscL_not super family cl37127
type III secretion apparatus protein, HrpE/YscL family; This model is related to pfam06188, ...
 164-219 8.44e-04

type III secretion apparatus protein, HrpE/YscL family; This model is related to pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108) [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


The actual alignment was detected with superfamily member TIGR02499:

Pssm-ID: 274165 [Multi-domain]  Cd Length: 166  Bit Score: 39.97  E-value: 8.44e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15830598   164 AKAERHAENLRRWQQELIDVERENtLRQHRYQQQRTAWAEQYANWKFEAEEHEKRL 219
Cdd:TIGR02499  20 AAARQRAEAILADAEEEAEASRQL-GYEQGLEQFWQEAAAQLAEWQQEAEQLEASL 74
 
Name Accession Description Interval E-value
DUF4236 pfam14020
Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. ...
 3-56 6.46e-23

Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 69 and 402 amino acids in length.


Pssm-ID: 433649  Cd Length: 55  Bit Score: 90.70  E-value: 6.46e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15830598     3 FRFRKSINIIPGVRLNLSNGAPSLSVGPRGASVSFGSR-GTYANLGLPGTGLSYR 56
Cdd:pfam14020   1 FRFRKSIKIGPGVRLNLSKSGISVSVGVRGARVTVGARgGVYTTVGIPGTGLSYR 55
HrpE_YscL_not TIGR02499
type III secretion apparatus protein, HrpE/YscL family; This model is related to pfam06188, ...
 164-219 8.44e-04

type III secretion apparatus protein, HrpE/YscL family; This model is related to pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108) [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274165 [Multi-domain]  Cd Length: 166  Bit Score: 39.97  E-value: 8.44e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15830598   164 AKAERHAENLRRWQQELIDVERENtLRQHRYQQQRTAWAEQYANWKFEAEEHEKRL 219
Cdd:TIGR02499  20 AAARQRAEAILADAEEEAEASRQL-GYEQGLEQFWQEAAAQLAEWQQEAEQLEASL 74
 
Name Accession Description Interval E-value
DUF4236 pfam14020
Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. ...
 3-56 6.46e-23

Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 69 and 402 amino acids in length.


Pssm-ID: 433649  Cd Length: 55  Bit Score: 90.70  E-value: 6.46e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15830598     3 FRFRKSINIIPGVRLNLSNGAPSLSVGPRGASVSFGSR-GTYANLGLPGTGLSYR 56
Cdd:pfam14020   1 FRFRKSIKIGPGVRLNLSKSGISVSVGVRGARVTVGARgGVYTTVGIPGTGLSYR 55
HrpE_YscL_not TIGR02499
type III secretion apparatus protein, HrpE/YscL family; This model is related to pfam06188, ...
 164-219 8.44e-04

type III secretion apparatus protein, HrpE/YscL family; This model is related to pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108) [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274165 [Multi-domain]  Cd Length: 166  Bit Score: 39.97  E-value: 8.44e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15830598   164 AKAERHAENLRRWQQELIDVERENtLRQHRYQQQRTAWAEQYANWKFEAEEHEKRL 219
Cdd:TIGR02499  20 AAARQRAEAILADAEEEAEASRQL-GYEQGLEQFWQEAAAQLAEWQQEAEQLEASL 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH