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Conserved domains on  [gi|15830842|ref|NP_309615|]
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transcriptional regulator PchE [Escherichia coli O157:H7 str. Sakai]

Protein Classification

PerC domain-containing protein( domain architecture ID 10532803)

PerC domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PerC pfam06069
PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in ...
 1-90 1.04e-49

PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.


:

Pssm-ID: 310570  Cd Length: 90  Bit Score: 151.58  E-value: 1.04e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830842    1 MVHDRIAEELEAKGFYRRAAARWGEVMLLVETDKERHQVTMRRLECSRKAQKPPEPPDNFGDLRKAVDRTYAEMGIDGVS 80
Cdd:pfam06069  1 MIHDKVAEKLEAKGFYRRAADRWAEVMVLVETDAERKWAAQRRAECLRKASRPPLPPDNISEIKKAVDRTYREMGIATVS 80

                         90
                 ....*....|
gi 15830842   81 DEIWRNYPDS 90
Cdd:pfam06069 81 GEVFRNYKPV 90
 
Name Accession Description Interval E-value
PerC pfam06069
PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in ...
 1-90 1.04e-49

PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.


Pssm-ID: 310570  Cd Length: 90  Bit Score: 151.58  E-value: 1.04e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830842    1 MVHDRIAEELEAKGFYRRAAARWGEVMLLVETDKERHQVTMRRLECSRKAQKPPEPPDNFGDLRKAVDRTYAEMGIDGVS 80
Cdd:pfam06069  1 MIHDKVAEKLEAKGFYRRAADRWAEVMVLVETDAERKWAAQRRAECLRKASRPPLPPDNISEIKKAVDRTYREMGIATVS 80

                         90
                 ....*....|
gi 15830842   81 DEIWRNYPDS 90
Cdd:pfam06069 81 GEVFRNYKPV 90
 
Name Accession Description Interval E-value
PerC pfam06069
PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in ...
 1-90 1.04e-49

PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.


Pssm-ID: 310570  Cd Length: 90  Bit Score: 151.58  E-value: 1.04e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830842    1 MVHDRIAEELEAKGFYRRAAARWGEVMLLVETDKERHQVTMRRLECSRKAQKPPEPPDNFGDLRKAVDRTYAEMGIDGVS 80
Cdd:pfam06069  1 MIHDKVAEKLEAKGFYRRAADRWAEVMVLVETDAERKWAAQRRAECLRKASRPPLPPDNISEIKKAVDRTYREMGIATVS 80

                         90
                 ....*....|
gi 15830842   81 DEIWRNYPDS 90
Cdd:pfam06069 81 GEVFRNYKPV 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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