|
Name |
Accession |
Description |
Interval |
E-value |
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
471-809 |
2.76e-98 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 309.46 E-value: 2.76e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 471 AHAALLTLQAELRMLEKHAGANEKISQQRRDLWKAESQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQLAVLGDKVT 550
Cdd:TIGR01541 1 NQLLLLTQQIADRKLKKLNTADEKSLQSRSDEIIALIKLEKLLEEAEQKALEALKKLAEATASIRAQNKRQLDRFGLGDK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 551 YQEHLNALAQQADKFAQQQRAKRAAIDAKnrgltdrqaaREATEQRLKEQYGDNPLALNNVMSEQKKTWAAEDQLRGSWM 630
Cdd:TIGR01541 81 QRERLDARLQIDRTFRKQQRDLNKAMTAK----------GLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 631 AGLRSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMTEILLKQAMVGIVGSIGS---- 706
Cdd:TIGR01541 151 AGARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSligg 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 707 AIGGGASASGGTAIQAAAAKFHFAAGGFTGTGGKYEPAGIVHRGEFVFTKEATsRIGVGNLYRLMRGYATGGYVGTPGSM 786
Cdd:TIGR01541 231 AASGGNSSSGAMASYGAAYVPNFAGGGYTAGGGKYEPSGVVHPGEFVFTKGAT-RIGEGNLYAIMRGYAGGGGVLGVVAA 309
|
330 340
....*....|....*....|...
gi 15830897 787 ADSRSQASGTFEQNNHVVINNDG 809
Cdd:TIGR01541 310 GSGGLGPNGMFGGETAISINNDG 332
|
|
| TMP_2 |
pfam06791 |
Prophage tail length tape measure protein; This family represents a conserved region located ... |
55-257 |
2.72e-69 |
|
Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.
Pssm-ID: 429120 Cd Length: 205 Bit Score: 227.60 E-value: 2.72e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 55 AQKAGISVGQYKAAMRMLPAQFTDVATQLAGGQSPWLILLQQGGQVKDSFGGMIPMFRGLAGAITLPM--VGATSLAVAT 132
Cdd:pfam06791 1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQSPLTVLLQQGGQIKDMFGGIGPALKALGGYVLGLInpLTLAAAAAAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 133 GALAYAWYQGNSTLSDFNKTLVLSGNQAGLTADRMLVLSRAGQAAGLTFNQTSESLSALVKAGVSGEAQIASISQSVARF 212
Cdd:pfam06791 81 GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAGGTQGAAAEALAALASTGKIGGEQLEGVIRAAARM 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 15830897 213 SSASGVEVDKVAEAFGKLTTDPTSGLTAMARQFHNVTAEQIAYVA 257
Cdd:pfam06791 161 EKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
|
|
| COG5281 |
COG5281 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
250-849 |
6.42e-26 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444092 [Multi-domain] Cd Length: 603 Bit Score: 113.55 E-value: 6.42e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 250 AEQIAYVAQLQRSGEEAGALQAANEAATKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIGRPDTAQEMLIKAE 329
Cdd:COG5281 2 AALAAAAALAAAAAAAAASAAAAAAAAALAAAAAAAAAAAGLAAAAAAAAAASLAAAAAAAALAAAAAAAAAAAAADALA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 330 AAFKKADDIWNLRKDDYFVNDEARARYWDDREKARLALEAARKKAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQ 409
Cdd:COG5281 82 AALAEDAAAAAAAAEAALAALAAAALALAAAALAEAALAAAAAAAAAAAAAAAAAAAAAAAAAEAAKAAAAAAAAAALAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 410 TPLEKYTARQEELNKALKDGKILQADYNTLMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRMLEKHA 489
Cdd:COG5281 162 AAAAAAAAAAAAAAAAALAAASAAAAAAAAKAAAEAAAEAAAAAEAAAAAAAAAAEAAAAEAQALAAAALAEQAALAAAS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 490 GANEKISQQRRDLWKAESQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQLAVLGDKVTYQEHLNALAQQADKFAQQQ 569
Cdd:COG5281 242 AAAQALAALAAAAAAAALALAAAAELALTAQAEAAAAAAAAAAAAAQAAEAAAAAAEAQALAAAAAAAAAQLAAAAAAAA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 570 RAKRAAIDAKNRGLTDRQAAREATEQRLKEQYGDNPLALNNVMSEQKKTWAAEDQLRGSWMAGLRSGWSEWEESATDSMS 649
Cdd:COG5281 322 QALRAAAQALAALAQRALAAAALAAAAQEAALAAAAAALQAALEAAAAAAAAELAAAGDWAAGAKAALAEYADSATNVAA 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 650 QVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMteillkQAMVGIVGSIGSAIGGGASASGGTAIQAAAAKFHF 729
Cdd:COG5281 402 QVAQAATSAFSGLTDALAGAVTTGKLLFDALASSIASIA------DALANAALASAADALGGALAGALGGLFGGGGGAAA 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 730 AAGGFTGTGGKYEPAGIVHRGEFVFTKEAT---SRIGVGNLYRLMRGYATGGYVGTPGSMAdsrsQASGTFEQNNHVVIN 806
Cdd:COG5281 476 GAAVYAGALGPFASGGVVSGPTFFAMAGGAglmGEAGPEAIMPLARGADGRLGVAAAGGGG----GAAVVVNITTPDAAG 551
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 15830897 807 NDGTNGQIGPQALKAVYDVARKAAMDVVTGQMRDGGLFSGGGR 849
Cdd:COG5281 552 FRRSQAQIAAQVARAVARGGRGLAAAAAAAGAADGGAGGGAAA 594
|
|
| Tape_meas_lam_C |
pfam09718 |
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively ... |
627-701 |
1.74e-18 |
|
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively well-conserved region near the C terminus of the tape measure protein of a lambda and related phage. The protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behaviour is attributed to proteins from distantly related or unrelated families in other phage.
Pssm-ID: 430770 [Multi-domain] Cd Length: 76 Bit Score: 80.40 E-value: 1.74e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15830897 627 GSWMAGLRSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMTEILLKQAMVGIV 701
Cdd:pfam09718 1 GDWTDGAKRALAEYAEEASNAAGQVEEAFTSAFSGMEDALVEFVTTGKLNFSDFADSIIADLARIAARQAITGPL 75
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
242-654 |
8.06e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 8.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 242 ARQFHNVTAEQIAYVAQLQRSGEEagaLQAANEAATKgfDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIGRPDTA 321
Cdd:PTZ00121 1205 ARKAEEERKAEEARKAEDAKKAEA---VKKAEEAKKD--AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 322 QEMLIKAEAAfKKADDIWN---LRKDDYFVNDEARARYWDD----REKARLALEAARKKAEQQSQQDKNAQQQSDTEASR 394
Cdd:PTZ00121 1280 ADELKKAEEK-KKADEAKKaeeKKKADEAKKKAEEAKKADEakkkAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 395 LKYTEEAQKAyERLQTPLEKYTA-----------RQEELNKALKDGKiLQADYNTLMAAAKKDYEATLKKPKQSGVKVSA 463
Cdd:PTZ00121 1359 AEAAEEKAEA-AEKKKEEAKKKAdaakkkaeekkKADEAKKKAEEDK-KKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 464 GDRQEDSAHAALLTLQAELRmlEKHAGANEKISQQRR-DLWKAESQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQL 542
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEA--KKAEEAKKKAEEAKKaDEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 543 AVLGDKVTYQEHLNAL--AQQADKFAQQQRAKRAAIDAKNRGLTDRQAAREATEQRLKEQYGDNPLALNNVMSEQKKTWA 620
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAeeAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
410 420 430
....*....|....*....|....*....|....
gi 15830897 621 AEDQLRGSWMAGLRSGWSEWEESATDSMSQVKSA 654
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
367-606 |
1.17e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 367 LEAArKKAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLEKYTARQEELNKALKDgkiLQADYNTlmaAAKKD 446
Cdd:PRK11281 45 LDAL-NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEA---LKDDNDE---ETRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 447 YE----ATLKKpKQSGVKVSAGDRQED--SAHAALLTLQAELRMLEKHAGANEKISQQRRDLWKAESQFAVLEEAAQRRQ 520
Cdd:PRK11281 118 LStlslRQLES-RLAQTLDQLQNAQNDlaEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 521 LSAQEKSLlahkDETLEYKRQLA----VLGDkvTYQEHLNALAQQADKFAQQQRAKRAAIDAKNRGLTdRQAAREATEQR 596
Cdd:PRK11281 197 LQAEQALL----NAQNDLQRKSLegntQLQD--LLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLS-EKTVQEAQSQD 269
|
250
....*....|
gi 15830897 597 LKEQYGDNPL 606
Cdd:PRK11281 270 EAARIQANPL 279
|
|
| YqbO |
COG5280 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
94-226 |
9.56e-05 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444091 [Multi-domain] Cd Length: 962 Bit Score: 46.08 E-value: 9.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 94 LQQGGQVKDSFG-GMIPMFRGLAGAITLPMVGATSLAVATGalayawyqgnstlSDFNKTLVLSGNQAGLTADRMLVLSR 172
Cdd:COG5280 30 FERAGEKMDRAGkKMKSIGAALTAGVTAALVAAGAAAVKAA-------------ADFEKAMSTVQAVTGATGEELEALEQ 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 15830897 173 A----GQAAGLTFNQTSESLSALVKAGVSGEaQIASISQSVARFSSASGVEVDKVAEA 226
Cdd:COG5280 97 LakelGATTGESAAEVAEALGSVAQAGLSGD-ELIAVTEGALVLAAATGVDLNEAAEI 153
|
|
| tape_meas_TP901 |
TIGR01760 |
phage tail tape measure protein, TP901 family, core region; This model represents a reasonably ... |
30-312 |
6.57e-04 |
|
phage tail tape measure protein, TP901 family, core region; This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273790 [Multi-domain] Cd Length: 350 Bit Score: 42.73 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 30 FSGTESDAKKTAAVVEQSMSR-QALAAQKAGISVGQYKAAMRMLPAQFTDVATQLAGGQSpwlILLQQGGQVKDSFGGMI 108
Cdd:TIGR01760 4 LGGGLVAAVKAAIEFEDAMSGvRAVVDGSRTKEFEDLSNQARDLGDETPFSAAQIAGAMT---ALARAGISAKDLLGATP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 109 PMFR-GLAGAITLPMVgATSLAVATGALAYAwyqgNSTLSDFNKTLVLSGNQAGLTADRM-LVLSRAG---QAAGLTFNQ 183
Cdd:TIGR01760 81 TALKlAAASDLTAEEA-ASILAKIMNAFGLT----AKDSEKVADVLNYTANNSAATTRDMgDALQYAGpvaKSLGVSLEE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 184 TSESLSALVKAGVSGEAQIASISQSVARFSSASGvevdKVAEAFGKL---TTDPTSGLTAMARQFHNV--------TAEQ 252
Cdd:TIGR01760 156 TAAATAALASAGIEGEIAGTALKAMLSRLAAPTG----KAAKALKKLgiqTRDAKGNMKGLLDVLKELqkltkgmgTEQQ 231
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15830897 253 IAYVAQLQrSGEEAGALQAANEAA-TKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAV 312
Cdd:TIGR01760 232 AAKLKTIF-GVEASSALATLLTAGsKLSLAKNAKSLANSNGSAKKEADKMLDTLKGQLKLL 291
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
361-542 |
8.15e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 8.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 361 EKARLALEAARK-KAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLEKYT--ARQEELNKALKDGKILQADYN 437
Cdd:pfam17380 392 ERVRQELEAARKvKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMerVRLEEQERQQQVERLRQQEEE 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 438 TLMAAAKKDYEATlKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRMLEKHAGANEKI---SQQRRdlwKAESQFAVLEE 514
Cdd:pfam17380 472 RKRKKLELEKEKR-DRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAiyeEERRR---EAEEERRKQQE 547
|
170 180 190
....*....|....*....|....*....|....
gi 15830897 515 AAQRRQLSAQ------EKSLLAHKDETLEYKRQL 542
Cdd:pfam17380 548 MEERRRIQEQmrkateERSRLEAMEREREMMRQI 581
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
238-510 |
1.56e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 238 LTAMARQFHNVTAEQIAYVAQLQRSGEEAGALQAANEAATKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIgr 317
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL-- 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 318 pDTAQEMLIKAEAAFKKADDIWNLRKDDYFVNDEARARYWDDREKARLALEAARKKAEQQSQQDKNAQQQSDTEASRLKY 397
Cdd:TIGR02168 326 -EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 398 TEEAQkayERLQTPLEKYTARQEELNKALKDGKI--LQADYNTLMAAAKK------DYEATLKKPKQSGVKVSagdRQED 469
Cdd:TIGR02168 405 LEARL---ERLEDRRERLQQEIEELLKKLEEAELkeLQAELEELEEELEElqeeleRLEEALEELREELEEAE---QALD 478
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 15830897 470 SAHAALLTLQAELRMLEKHAGANEKISQQRRDLWKAESQFA 510
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
471-809 |
2.76e-98 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 309.46 E-value: 2.76e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 471 AHAALLTLQAELRMLEKHAGANEKISQQRRDLWKAESQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQLAVLGDKVT 550
Cdd:TIGR01541 1 NQLLLLTQQIADRKLKKLNTADEKSLQSRSDEIIALIKLEKLLEEAEQKALEALKKLAEATASIRAQNKRQLDRFGLGDK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 551 YQEHLNALAQQADKFAQQQRAKRAAIDAKnrgltdrqaaREATEQRLKEQYGDNPLALNNVMSEQKKTWAAEDQLRGSWM 630
Cdd:TIGR01541 81 QRERLDARLQIDRTFRKQQRDLNKAMTAK----------GLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 631 AGLRSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMTEILLKQAMVGIVGSIGS---- 706
Cdd:TIGR01541 151 AGARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSligg 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 707 AIGGGASASGGTAIQAAAAKFHFAAGGFTGTGGKYEPAGIVHRGEFVFTKEATsRIGVGNLYRLMRGYATGGYVGTPGSM 786
Cdd:TIGR01541 231 AASGGNSSSGAMASYGAAYVPNFAGGGYTAGGGKYEPSGVVHPGEFVFTKGAT-RIGEGNLYAIMRGYAGGGGVLGVVAA 309
|
330 340
....*....|....*....|...
gi 15830897 787 ADSRSQASGTFEQNNHVVINNDG 809
Cdd:TIGR01541 310 GSGGLGPNGMFGGETAISINNDG 332
|
|
| TMP_2 |
pfam06791 |
Prophage tail length tape measure protein; This family represents a conserved region located ... |
55-257 |
2.72e-69 |
|
Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.
Pssm-ID: 429120 Cd Length: 205 Bit Score: 227.60 E-value: 2.72e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 55 AQKAGISVGQYKAAMRMLPAQFTDVATQLAGGQSPWLILLQQGGQVKDSFGGMIPMFRGLAGAITLPM--VGATSLAVAT 132
Cdd:pfam06791 1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQSPLTVLLQQGGQIKDMFGGIGPALKALGGYVLGLInpLTLAAAAAAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 133 GALAYAWYQGNSTLSDFNKTLVLSGNQAGLTADRMLVLSRAGQAAGLTFNQTSESLSALVKAGVSGEAQIASISQSVARF 212
Cdd:pfam06791 81 GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAGGTQGAAAEALAALASTGKIGGEQLEGVIRAAARM 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 15830897 213 SSASGVEVDKVAEAFGKLTTDPTSGLTAMARQFHNVTAEQIAYVA 257
Cdd:pfam06791 161 EKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
|
|
| COG5281 |
COG5281 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
250-849 |
6.42e-26 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444092 [Multi-domain] Cd Length: 603 Bit Score: 113.55 E-value: 6.42e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 250 AEQIAYVAQLQRSGEEAGALQAANEAATKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIGRPDTAQEMLIKAE 329
Cdd:COG5281 2 AALAAAAALAAAAAAAAASAAAAAAAAALAAAAAAAAAAAGLAAAAAAAAAASLAAAAAAAALAAAAAAAAAAAAADALA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 330 AAFKKADDIWNLRKDDYFVNDEARARYWDDREKARLALEAARKKAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQ 409
Cdd:COG5281 82 AALAEDAAAAAAAAEAALAALAAAALALAAAALAEAALAAAAAAAAAAAAAAAAAAAAAAAAAEAAKAAAAAAAAAALAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 410 TPLEKYTARQEELNKALKDGKILQADYNTLMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRMLEKHA 489
Cdd:COG5281 162 AAAAAAAAAAAAAAAAALAAASAAAAAAAAKAAAEAAAEAAAAAEAAAAAAAAAAEAAAAEAQALAAAALAEQAALAAAS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 490 GANEKISQQRRDLWKAESQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQLAVLGDKVTYQEHLNALAQQADKFAQQQ 569
Cdd:COG5281 242 AAAQALAALAAAAAAAALALAAAAELALTAQAEAAAAAAAAAAAAAQAAEAAAAAAEAQALAAAAAAAAAQLAAAAAAAA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 570 RAKRAAIDAKNRGLTDRQAAREATEQRLKEQYGDNPLALNNVMSEQKKTWAAEDQLRGSWMAGLRSGWSEWEESATDSMS 649
Cdd:COG5281 322 QALRAAAQALAALAQRALAAAALAAAAQEAALAAAAAALQAALEAAAAAAAAELAAAGDWAAGAKAALAEYADSATNVAA 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 650 QVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMteillkQAMVGIVGSIGSAIGGGASASGGTAIQAAAAKFHF 729
Cdd:COG5281 402 QVAQAATSAFSGLTDALAGAVTTGKLLFDALASSIASIA------DALANAALASAADALGGALAGALGGLFGGGGGAAA 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 730 AAGGFTGTGGKYEPAGIVHRGEFVFTKEAT---SRIGVGNLYRLMRGYATGGYVGTPGSMAdsrsQASGTFEQNNHVVIN 806
Cdd:COG5281 476 GAAVYAGALGPFASGGVVSGPTFFAMAGGAglmGEAGPEAIMPLARGADGRLGVAAAGGGG----GAAVVVNITTPDAAG 551
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 15830897 807 NDGTNGQIGPQALKAVYDVARKAAMDVVTGQMRDGGLFSGGGR 849
Cdd:COG5281 552 FRRSQAQIAAQVARAVARGGRGLAAAAAAAGAADGGAGGGAAA 594
|
|
| Tape_meas_lam_C |
pfam09718 |
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively ... |
627-701 |
1.74e-18 |
|
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively well-conserved region near the C terminus of the tape measure protein of a lambda and related phage. The protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behaviour is attributed to proteins from distantly related or unrelated families in other phage.
Pssm-ID: 430770 [Multi-domain] Cd Length: 76 Bit Score: 80.40 E-value: 1.74e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15830897 627 GSWMAGLRSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMTEILLKQAMVGIV 701
Cdd:pfam09718 1 GDWTDGAKRALAEYAEEASNAAGQVEEAFTSAFSGMEDALVEFVTTGKLNFSDFADSIIADLARIAARQAITGPL 75
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
359-600 |
2.19e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 359 DREKAR----LALEAARKKAEQQSQQDKNAQQQSdteasrlkytEEAQKAYERLQTPLEKYTARQEELNKALKDGKILQA 434
Cdd:COG1196 208 QAEKAEryreLKEELKELEAELLLLKLRELEAEL----------EELEAELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 435 DYNTLMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRMLEKH-AGANEKISQQRRDLWKAESQFAVLE 513
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEElEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 514 E--AAQRRQLSAQEKSLLAHKDETLE-YKRQLAVLGDKVTYQEHLNALAQQADKFAQQQRAKRAAIDAKNRGLTDRQAAR 590
Cdd:COG1196 358 AelAEAEEALLEAEAELAEAEEELEElAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250
....*....|
gi 15830897 591 EATEQRLKEQ 600
Cdd:COG1196 438 EEEEEALEEA 447
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
242-654 |
8.06e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 8.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 242 ARQFHNVTAEQIAYVAQLQRSGEEagaLQAANEAATKgfDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIGRPDTA 321
Cdd:PTZ00121 1205 ARKAEEERKAEEARKAEDAKKAEA---VKKAEEAKKD--AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 322 QEMLIKAEAAfKKADDIWN---LRKDDYFVNDEARARYWDD----REKARLALEAARKKAEQQSQQDKNAQQQSDTEASR 394
Cdd:PTZ00121 1280 ADELKKAEEK-KKADEAKKaeeKKKADEAKKKAEEAKKADEakkkAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 395 LKYTEEAQKAyERLQTPLEKYTA-----------RQEELNKALKDGKiLQADYNTLMAAAKKDYEATLKKPKQSGVKVSA 463
Cdd:PTZ00121 1359 AEAAEEKAEA-AEKKKEEAKKKAdaakkkaeekkKADEAKKKAEEDK-KKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 464 GDRQEDSAHAALLTLQAELRmlEKHAGANEKISQQRR-DLWKAESQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQL 542
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEA--KKAEEAKKKAEEAKKaDEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 543 AVLGDKVTYQEHLNAL--AQQADKFAQQQRAKRAAIDAKNRGLTDRQAAREATEQRLKEQYGDNPLALNNVMSEQKKTWA 620
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAeeAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
410 420 430
....*....|....*....|....*....|....
gi 15830897 621 AEDQLRGSWMAGLRSGWSEWEESATDSMSQVKSA 654
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
367-606 |
1.17e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 367 LEAArKKAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLEKYTARQEELNKALKDgkiLQADYNTlmaAAKKD 446
Cdd:PRK11281 45 LDAL-NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEA---LKDDNDE---ETRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 447 YE----ATLKKpKQSGVKVSAGDRQED--SAHAALLTLQAELRMLEKHAGANEKISQQRRDLWKAESQFAVLEEAAQRRQ 520
Cdd:PRK11281 118 LStlslRQLES-RLAQTLDQLQNAQNDlaEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 521 LSAQEKSLlahkDETLEYKRQLA----VLGDkvTYQEHLNALAQQADKFAQQQRAKRAAIDAKNRGLTdRQAAREATEQR 596
Cdd:PRK11281 197 LQAEQALL----NAQNDLQRKSLegntQLQD--LLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLS-EKTVQEAQSQD 269
|
250
....*....|
gi 15830897 597 LKEQYGDNPL 606
Cdd:PRK11281 270 EAARIQANPL 279
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
359-621 |
3.88e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 359 DREKARLALEAARKKAEQQSQQDKNAQQQSDTEASRLKyTEEAQKAYERLQtpLEKYTARQEELNKALKDGKILQADYNT 438
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELA-RLEQDIARLEER--RRELEERLEELEEELAELEEELEELEE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 439 LMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRMLEKHagANEKISQQRRDLWKAESQFAVLEEAAQR 518
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE--LLEALRAAAELAAQLEELEEAEEALLER 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 519 --RQLSAQEKSLLAHKDETLEYKRQLAVLGDKVTYQEHLNALAQQADKFAQQQRAKRAAIDAKNRGLTDRQAAREATEQR 596
Cdd:COG1196 416 leRLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
250 260
....*....|....*....|....*
gi 15830897 597 LKEQYGDNPLALNNVMSEQKKTWAA 621
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| YqbO |
COG5280 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
94-226 |
9.56e-05 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444091 [Multi-domain] Cd Length: 962 Bit Score: 46.08 E-value: 9.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 94 LQQGGQVKDSFG-GMIPMFRGLAGAITLPMVGATSLAVATGalayawyqgnstlSDFNKTLVLSGNQAGLTADRMLVLSR 172
Cdd:COG5280 30 FERAGEKMDRAGkKMKSIGAALTAGVTAALVAAGAAAVKAA-------------ADFEKAMSTVQAVTGATGEELEALEQ 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 15830897 173 A----GQAAGLTFNQTSESLSALVKAGVSGEaQIASISQSVARFSSASGVEVDKVAEA 226
Cdd:COG5280 97 LakelGATTGESAAEVAEALGSVAQAGLSGD-ELIAVTEGALVLAAATGVDLNEAAEI 153
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
350-603 |
1.37e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 350 DEARARYwDDREKARLALEAARKKAEQQSQQDKNAQQQSDTEASRLKytEEAQKAYERLQtplekytARQEELNKALKDG 429
Cdd:COG1196 284 EEAQAEE-YELLAELARLEQDIARLEERRRELEERLEELEEELAELE--EELEELEEELE-------ELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 430 KILQADYNTLMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRMLEKHAGANEKISQQRRDLWKAESQF 509
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 510 AVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQLAVLGDKVTYQEHLNALAQQADKFAQQQRAKRAAIDAKNRGLTDRQAA 589
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
250
....*....|....
gi 15830897 590 REATEQRLKEQYGD 603
Cdd:COG1196 514 LLLAGLRGLAGAVA 527
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
328-626 |
1.56e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 328 AEAAFKKADD-IWNLRKDDyFVNDEARARywDDREKARLALEAARKKAEQQSQQDKNAQQQSDT---EASRL-KYTEEAQ 402
Cdd:PRK02224 300 AEAGLDDADAeAVEARREE-LEDRDEELR--DRLEECRVAAQAHNEEAESLREDADDLEERAEElreEAAELeSELEEAR 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 403 KAYERLQTPLEKYTARQEELNKALKDGKILQ---ADYNTLMAAAK-------KDYEATLKKPKQSGVKVSA--------- 463
Cdd:PRK02224 377 EAVEDRREEIEELEEEIEELRERFGDAPVDLgnaEDFLEELREERdelrereAELEATLRTARERVEEAEAlleagkcpe 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 464 -GDRQEDSAHAALL--------TLQAELRMLE-KHAGANEKIsQQRRDLWKAESQFAVLEEaaqRRQLSAQeksLLAHKD 533
Cdd:PRK02224 457 cGQPVEGSPHVETIeedrerveELEAELEDLEeEVEEVEERL-ERAEDLVEAEDRIERLEE---RREDLEE---LIAERR 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 534 ETLEYKR-QLAVLGDKVtyqEHLNALAQQADKFAQQQR----AKRAAIDAKNRGLTDRQAAREA-----TEQRLKEQYGD 603
Cdd:PRK02224 530 ETIEEKReRAEELRERA---AELEAEAEEKREAAAEAEeeaeEAREEVAELNSKLAELKERIESlerirTLLAAIADAED 606
|
330 340
....*....|....*....|....
gi 15830897 604 NPLALNnvmsEQKKTWAA-EDQLR 626
Cdd:PRK02224 607 EIERLR----EKREALAElNDERR 626
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
250-588 |
1.66e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 250 AEQIAYVAQLQRSGEEAGalQAANEAATKGfdDQTRRLKENmgtlETWADRTARAFKSMWDAVLDIGRPDTAQEMLIKAE 329
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAK--KKAEEAKKKA--DEAKKAAEA----KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 330 AAfKKADDIWN---LRKDDYFVNDEARARYWDDREKARLALEAARKKAEQ---------QSQQDKNAQQQSDTE-----A 392
Cdd:PTZ00121 1544 EK-KKADELKKaeeLKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEArieevmklyEEEKKMKAEEAKKAEeakikA 1622
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 393 SRLKYTEEAQKAYERLQTPLEKYTARQEELNKALKDGKILQADYNTLMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAH 472
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 473 AAlltlqAELRMLEkhagANEKisQQRRDLWKAESQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYK-RQLAVLGDKVTY 551
Cdd:PTZ00121 1703 KA-----EELKKKE----AEEK--KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKiAHLKKEEEKKAE 1771
|
330 340 350
....*....|....*....|....*....|....*..
gi 15830897 552 QEHLNALAQQADKFAQQQRAKRAAIDAKNRGLTDRQA 588
Cdd:PTZ00121 1772 EIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFA 1808
|
|
| tape_meas_TP901 |
TIGR01760 |
phage tail tape measure protein, TP901 family, core region; This model represents a reasonably ... |
30-312 |
6.57e-04 |
|
phage tail tape measure protein, TP901 family, core region; This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273790 [Multi-domain] Cd Length: 350 Bit Score: 42.73 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 30 FSGTESDAKKTAAVVEQSMSR-QALAAQKAGISVGQYKAAMRMLPAQFTDVATQLAGGQSpwlILLQQGGQVKDSFGGMI 108
Cdd:TIGR01760 4 LGGGLVAAVKAAIEFEDAMSGvRAVVDGSRTKEFEDLSNQARDLGDETPFSAAQIAGAMT---ALARAGISAKDLLGATP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 109 PMFR-GLAGAITLPMVgATSLAVATGALAYAwyqgNSTLSDFNKTLVLSGNQAGLTADRM-LVLSRAG---QAAGLTFNQ 183
Cdd:TIGR01760 81 TALKlAAASDLTAEEA-ASILAKIMNAFGLT----AKDSEKVADVLNYTANNSAATTRDMgDALQYAGpvaKSLGVSLEE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 184 TSESLSALVKAGVSGEAQIASISQSVARFSSASGvevdKVAEAFGKL---TTDPTSGLTAMARQFHNV--------TAEQ 252
Cdd:TIGR01760 156 TAAATAALASAGIEGEIAGTALKAMLSRLAAPTG----KAAKALKKLgiqTRDAKGNMKGLLDVLKELqkltkgmgTEQQ 231
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15830897 253 IAYVAQLQrSGEEAGALQAANEAA-TKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAV 312
Cdd:TIGR01760 232 AAKLKTIF-GVEASSALATLLTAGsKLSLAKNAKSLANSNGSAKKEADKMLDTLKGQLKLL 291
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
361-542 |
8.15e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 8.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 361 EKARLALEAARK-KAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLEKYT--ARQEELNKALKDGKILQADYN 437
Cdd:pfam17380 392 ERVRQELEAARKvKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMerVRLEEQERQQQVERLRQQEEE 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 438 TLMAAAKKDYEATlKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRMLEKHAGANEKI---SQQRRdlwKAESQFAVLEE 514
Cdd:pfam17380 472 RKRKKLELEKEKR-DRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAiyeEERRR---EAEEERRKQQE 547
|
170 180 190
....*....|....*....|....*....|....
gi 15830897 515 AAQRRQLSAQ------EKSLLAHKDETLEYKRQL 542
Cdd:pfam17380 548 MEERRRIQEQmrkateERSRLEAMEREREMMRQI 581
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
367-626 |
8.76e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 8.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 367 LEAARKKAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLEKYTARQEELNKALKdgKILQADYNTLMAAAKKd 446
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE--RINRARKAAPLAAHIK- 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 447 yeatlkkpkqsgvKVSAGDRQEDSAHAallTLQAELRMLEKHAGANEKISQQRRDLWKAESQFAVLEEAAQR-RQLSAQE 525
Cdd:TIGR00618 301 -------------AVTQIEQQAQRIHT---ELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHiRDAHEVA 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 526 KSLLAHKDETLEYKRQLAVLG-DKVTYQEHLNALAQQADKFAQQQrAKRAAIDAKNRGLTDRQAAREATEQRLKEQYGDN 604
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQqQKTTLTQKLQSLCKELDILQREQ-ATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELC 443
|
250 260
....*....|....*....|..
gi 15830897 605 PLALNNVMSEQKKTWAAEDQLR 626
Cdd:TIGR00618 444 AAAITCTAQCEKLEKIHLQESA 465
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
416-600 |
1.21e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 416 TARQEELNKALKDGKILQADYNTLMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRMLEKhaganeKI 495
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK------EI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 496 SQQRRDLWKAESQFAVLEEAAQRRQLSAQEKsLLAHKDETLEYKRQLAVLGDKVTY-QEHLNALAQQADKFAQQQRAKRA 574
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLA-LLLSPEDFLDAVRRLQYLKYLAPArREQAEELRADLAELAALRAELEA 171
|
170 180
....*....|....*....|....*.
gi 15830897 575 AIDAKNRGLTDRQAAREATEQRLKEQ 600
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAER 197
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
238-510 |
1.56e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 238 LTAMARQFHNVTAEQIAYVAQLQRSGEEAGALQAANEAATKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIgr 317
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL-- 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 318 pDTAQEMLIKAEAAFKKADDIWNLRKDDYFVNDEARARYWDDREKARLALEAARKKAEQQSQQDKNAQQQSDTEASRLKY 397
Cdd:TIGR02168 326 -EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 398 TEEAQkayERLQTPLEKYTARQEELNKALKDGKI--LQADYNTLMAAAKK------DYEATLKKPKQSGVKVSagdRQED 469
Cdd:TIGR02168 405 LEARL---ERLEDRRERLQQEIEELLKKLEEAELkeLQAELEELEEELEElqeeleRLEEALEELREELEEAE---QALD 478
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 15830897 470 SAHAALLTLQAELRMLEKHAGANEKISQQRRDLWKAESQFA 510
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
361-626 |
2.19e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 361 EKARLALEAARKKAEQQSQQDKNAQQQSDTEAsrlkytEEAQKAYERLQTPLEKYTARQEELNKALKDGKILQADYNTLM 440
Cdd:COG4372 9 GKARLSLFGLRPKTGILIAALSEQLRKALFEL------DKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 441 AAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRMLEKhagANEKISQQRRDLwkaesQFAVLEEAAQRRQ 520
Cdd:COG4372 83 EELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQ---QRKQLEAQIAEL-----QSEIAEREEELKE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 521 LSAQEKSLLAHKDETLEYKRQLavlgDKVTYQEHLNALAQQADKFAQQQRAKRAAIDAKNRGLTDRQAAREATEQRLKEQ 600
Cdd:COG4372 155 LEEQLESLQEELAALEQELQAL----SEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAK 230
|
250 260
....*....|....*....|....*.
gi 15830897 601 YGDNPLALNNVMSEQKKTWAAEDQLR 626
Cdd:COG4372 231 LGLALSALLDALELEEDKEELLEEVI 256
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
361-669 |
2.66e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 361 EKARLALEAARKKAEQQSQQDKNAQQQSDTEASRLkytEEAQKAYERLQTPLEKYtarQEELN----KALKDGKILQA-- 434
Cdd:COG3096 350 ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARL---EAAEEEVDSLKSQLADY---QQALDvqqtRAIQYQQAVQAle 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 435 ------DYNTLMAAAKKDYEATLKkpkqsgvkvsagdRQEDSAHAALLTLQAELRMLEKHAGANEKISQ---------QR 499
Cdd:COG3096 424 karalcGLPDLTPENAEDYLAAFR-------------AKEQQATEEVLELEQKLSVADAARRQFEKAYElvckiagevER 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 500 RDLWKAESQfaVLEEAAQRRQLSAQEKSLlahkdetleyKRQLAVLGDKVTYQEHLNALAQQadkFAQQQRAKRAAIDAk 579
Cdd:COG3096 491 SQAWQTARE--LLRRYRSQQALAQRLQQL----------RAQLAELEQRLRQQQNAERLLEE---FCQRIGQQLDAAEE- 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 580 nrgLTDRQAAREATEQRLKEQygdnplaLNNVMSEQKKTWAAEDQLRGSwMAGLRSGWSEWEEsATDSMSQVKSAATQTF 659
Cdd:COG3096 555 ---LEELLAELEAQLEELEEQ-------AAEAVEQRSELRQQLEQLRAR-IKELAARAPAWLA-AQDALERLREQSGEAL 622
|
330
....*....|
gi 15830897 660 DGIAQNMAAM 669
Cdd:COG3096 623 ADSQEVTAAM 632
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
350-475 |
5.18e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 350 DEARARYWDDREK-----ARLalEAARKKAEQQSQqdknaqqqsdtEASRLKytEEAQKAYERLQTPLEKYtarQEELNK 424
Cdd:PRK00409 505 EEAKKLIGEDKEKlneliASL--EELERELEQKAE-----------EAEALL--KEAEKLKEELEEKKEKL---QEEEDK 566
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 15830897 425 ALKDgkiLQADYNTLMAAAKKDYEATLKK--PKQSGVKVSAGDRQEDSAHAAL 475
Cdd:PRK00409 567 LLEE---AEKEAQQAIKEAKKEADEIIKElrQLQKGGYASVKAHELIEARKRL 616
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
359-599 |
5.63e-03 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 40.02 E-value: 5.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 359 DREKARLALeaaRKKAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLEKYTARQEELNKALKDGKILQADYNT 438
Cdd:pfam15558 75 GREERRRAD---RREKQVIEKESRWREQAEDQENQRQEKLERARQEAEQRKQCQEQRLKEKEEELQALREQNSLQLQERL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 439 LMAAAKKdyeatLKKPKQSGVKVSAGDRQEDSAHAALLTL-----QAELRMLEKHAGANEKISQQRRdlwkaesqfavlE 513
Cdd:pfam15558 152 EEACHKR-----QLKEREEQKKVQENNLSELLNHQARKVLvdcqaKAEELLRRLSLEQSLQRSQENY------------E 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 514 EAAQRRQLSAQEKSLlaHKDETLEYKRQLAVLGDKvTYQEHLNALAQQADKFAQQQR-AKRAAIDAKNRGLTDRQAAREA 592
Cdd:pfam15558 215 QLVEERHRELREKAQ--KEEEQFQRAKWRAEEKEE-ERQEHKEALAELADRKIQQARqVAHKTVQDKAQRARELNLEREK 291
|
....*..
gi 15830897 593 TEQRLKE 599
Cdd:pfam15558 292 NHHILKL 298
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
365-596 |
5.76e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 365 LALEAARKKAEQQSQQDKNAQQQSDTEASRLKYTE----EAQKAYERLQTPLEKYTARQEELNKALKDGKILQADYNTLM 440
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKkeekALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 441 AAAKKDYEATLKKPKQSgvkVSAGDRQEDSAHAALLTLQAELRMLEKHAGANEKISQQRRDLwkAESQFAVLEE-AAQRR 519
Cdd:COG4942 93 AELRAELEAQKEELAEL---LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ--AEELRADLAElAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15830897 520 QLSAQEKSLLAHKDETLEYKRQLAVLgdKVTYQEHLNALAQQADKFAQQQRAKRAAIDAKNRGLTDRQAAREATEQR 596
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEAL--KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
360-640 |
8.34e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.49 E-value: 8.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 360 REKARL--ALEAARKKAEQQSQQDKNAQQQSDTEASRLKyteeaqKAYERLQTPLEKYTARQEELNKALKDGKI----LQ 433
Cdd:pfam07888 41 QERAELlqAQEAANRQREKEKERYKRDREQWERQRRELE------SRVAELKEELRQSREKHEELEEKYKELSAsseeLS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 434 ADYNTLMAAaKKDYEATLKkpkqsgvkvsagDRQEDSAHAALLTLQAELRmLEKHAGANEKISQQRRDLW--KAESQFAV 511
Cdd:pfam07888 115 EEKDALLAQ-RAAHEARIR------------ELEEDIKTLTQRVLERETE-LERMKERAKKAGAQRKEEEaeRKQLQAKL 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 512 LEEAAQRRQLSAQEKSLLAHKDETLEYKRQLavlgdkvtyQEHLNALAQQADKfAQQQRAKRAAIDAKNRGLTDRQAARE 591
Cdd:pfam07888 181 QQTEEELRSLSKEFQELRNSLAQRDTQVLQL---------QDTITTLTQKLTT-AHRKEAENEALLEELRSLQERLNASE 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 15830897 592 ATEQRLKEQYGDNPLALNNVMSE--QKKTWAAEDQLRGSWMA-GLRSGWSEW 640
Cdd:pfam07888 251 RKVEGLGEELSSMAAQRDRTQAElhQARLQAAQLTLQLADASlALREGRARW 302
|
|
| COG5283 |
COG5283 |
Phage-related tail protein [Mobilome: prophages, transposons]; |
21-272 |
9.83e-03 |
|
Phage-related tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444094 [Multi-domain] Cd Length: 747 Bit Score: 39.45 E-value: 9.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 21 EQMARVRRHFSGTESDAKKTAAVVEQSMSRQALAAQKAGISVGQYKAAMRMLPAQFTDVATQLAGGQSPWLILLQQGGQV 100
Cdd:COG5283 38 RALARALERAKQAAARLQTKYNKLRQSLQRLRQALDQAGIDTRQLSAAQRRLRSSLEQTNRQLERQQQRLARLGARQDRL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 101 K------DSFGGMIPMFRGLAGAITLPMVGATSLAVATGALAYAWYQGNST--LSDFNKTLVLSGNQAGLTADRMLVLSR 172
Cdd:COG5283 118 KaararlQRLAGAGAAAAAIGAALAASVKPAIDFEDAMADVAATVDLDKSSeqFKALGKQARELSAQTPQSADDIAAGQA 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830897 173 AGQAAGLTFNQTSESLSALVKAGVSGEAQIASISQSVARFSSASGVEVDKVAEAFGKLTTDPTSGLTAMARQfhnvtAEQ 252
Cdd:COG5283 198 ALAQAGVSAEDILAFTPTAAKLATAFDTDAEEAAEIAAKILNAFKLPADDVERLGDALNYAGNNGATSLADL-----ADA 272
|
250 260
....*....|....*....|....
gi 15830897 253 IAYVA----QLQRSGEEAGALQAA 272
Cdd:COG5283 273 LPYVGpvakALGVSGKEAAALGAA 296
|
|
| |
