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Conserved domains on  [gi|15831144|ref|NP_309917|]
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sugar ABC transporter permease [Escherichia coli O157:H7 str. Sakai]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
29-288 8.19e-77

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 235.80  E-value: 8.19e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  29 VAWPMVSNIEISFLRLPLNpNIESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTA 108
Cdd:COG1175  35 VLYPLLYTLYLSFTDWNLL-GPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFF 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 109 RSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLgVDLLHLyeQAPLWFDNPGSSFVLVVIFAIWRYFPYAFISFLAILQT 188
Cdd:COG1175 114 RTLFFLPWVISPVVVALIWKWLFNPDYGLLNAL-LGALGL--EPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQS 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 189 IDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLT-----TKVDILGVYLYKTAFAFNDLG 263
Cdd:COG1175 191 IPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTgggpgNSTTTLVLYIYQTAFQQFDFG 270

                       250       260
                ....*....|....*....|....*
gi 15831144 264 KAAAISVVLFIIIFAVILLTRKRVN 288
Cdd:COG1175 271 YASAIAVVLFLIILVLTLLQLRLLR 295
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
29-288 8.19e-77

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 235.80  E-value: 8.19e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  29 VAWPMVSNIEISFLRLPLNpNIESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTA 108
Cdd:COG1175  35 VLYPLLYTLYLSFTDWNLL-GPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFF 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 109 RSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLgVDLLHLyeQAPLWFDNPGSSFVLVVIFAIWRYFPYAFISFLAILQT 188
Cdd:COG1175 114 RTLFFLPWVISPVVVALIWKWLFNPDYGLLNAL-LGALGL--EPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQS 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 189 IDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLT-----TKVDILGVYLYKTAFAFNDLG 263
Cdd:COG1175 191 IPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTgggpgNSTTTLVLYIYQTAFQQFDFG 270

                       250       260
                ....*....|....*....|....*
gi 15831144 264 KAAAISVVLFIIIFAVILLTRKRVN 288
Cdd:COG1175 271 YASAIAVVLFLIILVLTLLQLRLLR 295
malF PRK10999
maltose ABC transporter permease MalF;
53-285 1.73e-24

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 102.73  E-value: 1.73e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   53 TFVGVSNYVRILSDPG----FWHSLWMTVWYTALVVAGSTVLGLAVAMFFNRE-FRLRKTARSLVILSYVTPS-IS-LVF 125
Cdd:PRK10999 263 VTIGWKNFTRVFTDEGiqkpFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEaLKGKAVYRVLLILPYAVPSfISiLIF 342

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  126 awKYMFNNGYGIVNYLgvdLLHLYEQAPLWFDNPGSSFVLVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAW 205
Cdd:PRK10999 343 --KGLFNQSFGEINMM---LSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPF 417

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  206 QRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTT-------------KVDILGVYLYKTAF---AFNDLGKAAAIS 269
Cdd:PRK10999 418 QNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNggpdmigtttpagYTDLLVSYTYRIAFeggGGQDFGLAAAIA 497

                        250
                 ....*....|....*.
gi 15831144  270 VVLFIIIFAVILLTRK 285
Cdd:PRK10999 498 TLIFLLVGALAILNLK 513
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 73-277 3.78e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 77.70  E-value: 3.78e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  73 LWMTVWYTALVVAGSTVLGLAVAMFFNR-EFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGivnylgvdllhlyeq 151
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARkRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--------------- 65

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 152 aplWFDNPGSSFVLVVIFAIWrYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWM 231
Cdd:cd06261  66 ---WGILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARA 141

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 15831144 232 FYMFADVYLLTTKVD---ILGVYLYKTAFAFNDLGKAAAISVVLFIIIF 277
Cdd:cd06261 142 LGEFALVSFLGGGEApgpGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 53-286 1.57e-14

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 73.56  E-value: 1.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144    53 TFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNRE-FRLRKTARSLVILSYVTPSISLVFAWKYMF 131
Cdd:TIGR03262  36 DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSrIPGKGAFRLVALLPLLAPSLLPAISLIYLF 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   132 NNGyGIVNylgvdllhlyeqaPLWFDNPGSSFVLVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIV 211
Cdd:TIGR03262 116 GNQ-GLLK-------------GLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTV 181

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15831144   212 TLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFI---IIFAVILLTRKR 286
Cdd:TIGR03262 182 TLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGVLLLLpalLAFGIDRAIQRR 259
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 87-281 3.35e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.78  E-value: 3.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144    87 STVLGLAVAMFFNRefRLRKTARSLVILSYVTPSISLVFAWKYMFnngygivnylgvdllhlyeqaplWFDNPGSSFVLV 166
Cdd:pfam00528   1 GIPLGIIAALRRGR--RLDRLLRPLIDLLQALPSFVLAILLVVIA-----------------------ILSILGHGILPA 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   167 VIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVD 246
Cdd:pfam00528  56 IILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG 135

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 15831144   247 iLGVYLYKTAFAFN-DLGKAAAISVVLFIIIFAVIL 281
Cdd:pfam00528 136 -LGLLLIEAILGYDyPEIQGPVLAAALILLLLNLLV 170
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
29-288 8.19e-77

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 235.80  E-value: 8.19e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  29 VAWPMVSNIEISFLRLPLNpNIESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTA 108
Cdd:COG1175  35 VLYPLLYTLYLSFTDWNLL-GPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFF 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 109 RSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLgVDLLHLyeQAPLWFDNPGSSFVLVVIFAIWRYFPYAFISFLAILQT 188
Cdd:COG1175 114 RTLFFLPWVISPVVVALIWKWLFNPDYGLLNAL-LGALGL--EPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQS 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 189 IDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLT-----TKVDILGVYLYKTAFAFNDLG 263
Cdd:COG1175 191 IPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTgggpgNSTTTLVLYIYQTAFQQFDFG 270

                       250       260
                ....*....|....*....|....*
gi 15831144 264 KAAAISVVLFIIIFAVILLTRKRVN 288
Cdd:COG1175 271 YASAIAVVLFLIILVLTLLQLRLLR 295
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
50-284 2.02e-34

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 130.67  E-value: 2.02e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  50 IESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNR-EFRLRKTARSLVILSYVTPSISLVFAWK 128
Cdd:COG1178  33 LRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARtDFPGRRLLRWLLLLPLALPPYVVALAWI 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 129 YMFNNGyGIVNYLGVDLLHLyeqaplWFDNPGSSFVLVVIFAIWrYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRF 208
Cdd:COG1178 113 ALFGPN-GLLNTLLRALFGL------EPPDIYGLGGIILVLVLF-NYPYVYLLLRAALRSIDASLEEAARSLGASPWRAF 184

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15831144 209 RIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFIIIFAVILLTR 284
Cdd:COG1178 185 RRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLER 260
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 29-289 1.36e-31

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 118.71  E-value: 1.36e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  29 VAWPMVSNIEISFLRLPLNPNIESTFvGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNR-EFRLRKT 107
Cdd:COG1176  26 FVLPLLLLLVYSFTTRDPYGGVVPGF-TLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARaPPRWRNL 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 108 ARSLVILSYVTPSISLVFAWKYMFNNGyGIVNYLGVdLLHLYEQAPLWFDNPGSsfvlVVIFAIWRYFPYAFISFLAILQ 187
Cdd:COG1176 105 LLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLL-ALGLIDEPLRLLYTEFA----VVIGLVYVYLPFMVLPLYAALE 178

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 188 TIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLL-TTKVDILGVYLYKTAFAFNDLGKAA 266
Cdd:COG1176 179 KIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLgGGKVLMIGNLIYQQFLSALNWPLAA 258

                       250       260
                ....*....|....*....|...
gi 15831144 267 AISVVLFIIIFAVILLTRKRVNL 289
Cdd:COG1176 259 ALAVVLLLIVLLVLLLYLRLLRR 281
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 51-285 1.06e-30

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 117.11  E-value: 1.06e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  51 ESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFN--REFRLRKTARSLVIL----SYVTpSISLV 124
Cdd:COG4209  66 GSPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVFGFPLPIILALLLNelRSKRFKKTVQTISYLphflSWVV-VAGIV 144

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 125 FAwkyMFNNGYGIVNYLgvdLLHLYEQAPLWFDNPGSSFVLVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANA 204
Cdd:COG4209 145 YQ---FLSPDTGLVNQL---LRALGGEPINFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGR 218

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 205 WQRFRIVTLPAIMPVLATVVTLRTIWMFYM-FADVYLLTTKV-----DILGVYLYKTAFAFNDLGKAAAI----SVVLFI 274
Cdd:COG4209 219 WQQIWHITLPGIRPTIVILLILNIGNILNVgFEQIYLLYNPLnystsDVIDTYVYRIGLQNGDYSYATAVglfkSVVGLI 298

                       250
                ....*....|.
gi 15831144 275 IIFAVILLTRK 285
Cdd:COG4209 299 LVLIANKIAKK 309
malF PRK10999
maltose ABC transporter permease MalF;
53-285 1.73e-24

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 102.73  E-value: 1.73e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   53 TFVGVSNYVRILSDPG----FWHSLWMTVWYTALVVAGSTVLGLAVAMFFNRE-FRLRKTARSLVILSYVTPS-IS-LVF 125
Cdd:PRK10999 263 VTIGWKNFTRVFTDEGiqkpFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEaLKGKAVYRVLLILPYAVPSfISiLIF 342

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  126 awKYMFNNGYGIVNYLgvdLLHLYEQAPLWFDNPGSSFVLVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAW 205
Cdd:PRK10999 343 --KGLFNQSFGEINMM---LSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPF 417

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  206 QRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTT-------------KVDILGVYLYKTAF---AFNDLGKAAAIS 269
Cdd:PRK10999 418 QNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNggpdmigtttpagYTDLLVSYTYRIAFeggGGQDFGLAAAIA 497

                        250
                 ....*....|....*.
gi 15831144  270 VVLFIIIFAVILLTRK 285
Cdd:PRK10999 498 TLIFLLVGALAILNLK 513
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
50-283 2.68e-24

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 99.13  E-value: 2.68e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   50 IESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTARSLVILSY-VTPSISLVFaWK 128
Cdd:PRK10561  34 FSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYaVAPAVAAVL-WI 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  129 YMFNNGYGIVNYLGVDLLHLYEQAplwfDNPGSSFVLVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRF 208
Cdd:PRK10561 113 FLFNPGRGLITHFLAEFGYDWNHA----QNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  209 RIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTT------KVDILGVYLYKTAFAFNDLGKAAAISVVLfiiIFAVILL 282
Cdd:PRK10561 189 FKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATsggpvqATTTLIYKIYREGFTGLDLSSSAAQSVVL---MFLVIVL 265


                 .
gi 15831144  283 T 283
Cdd:PRK10561 266 T 266
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
58-282 2.24e-20

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 90.61  E-value: 2.24e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  58 SNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNR-EFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGYG 136
Cdd:COG1178 325 DNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRrRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLP 404

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 137 IVNYlgvdllhlyeqaplwfdnpGSSFVLVVIFAIwRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAI 216
Cdd:COG1178 405 LLLY-------------------GTLAILVLAYVV-RFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLL 464

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15831144 217 MPVLATVvtlrtiwMFYMFAD--------VYLLTTKVDILGVYLYkTAFAFNDLGKAAAISVVLFIIIFAVILL 282
Cdd:COG1178 465 RPGLLAA-------ALLVFVTsmkelsatLLLRPPGFETLAVLIY-QLASSGRYGEAAALALLLVLVSLLPVLL 530
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 60-282 3.50e-19

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 84.78  E-value: 3.50e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  60 YVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNR-EFRLRKTARSLVILSYVTPSISLvfawkymfnngygiv 138
Cdd:COG1177  50 YAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARyRFRGRRLLLALLLLPLVVPGIVL--------------- 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 139 nylGVDLLHLYEQAPLwfdnpGSSFVLVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMP 218
Cdd:COG1177 115 ---GVALLLLFSALGL-----SGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAP 186

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15831144 219 VLATVVTLRTIWMFYMFADVYLLTT-KVDILGVYLYkTAFAFNDLGKAAAISVVLFIIIFAVILL 282
Cdd:COG1177 187 GILAGALLAFTLSFDEFVITLFLAGpGVTTLPVYIY-SMIRRGISPEINALSTLLILLSLLLLLL 250
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 73-277 3.78e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 77.70  E-value: 3.78e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  73 LWMTVWYTALVVAGSTVLGLAVAMFFNR-EFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGivnylgvdllhlyeq 151
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARkRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--------------- 65

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 152 aplWFDNPGSSFVLVVIFAIWrYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWM 231
Cdd:cd06261  66 ---WGILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARA 141

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 15831144 232 FYMFADVYLLTTKVD---ILGVYLYKTAFAFNDLGKAAAISVVLFIIIF 277
Cdd:cd06261 142 LGEFALVSFLGGGEApgpGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 58-286 4.86e-16

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 76.29  E-value: 4.86e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  58 SNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNR-EFRLRKTARSLVILSYVTPSISLVFAWKYMFNNgYG 136
Cdd:COG0395  61 ENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARfRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQ-LG 139

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 137 IVN-YLGVDLLHLYEQAPLwfdnpgssfvlvVIFAIWRYFpyafisflailQTIDKSLYEAAEMDGANAWQRFRIVTLPA 215
Cdd:COG0395 140 LLNtYWGLILPYLAFGLPF------------GIFLLRQFF-----------RSIPRELEEAARIDGASEFRIFWRIVLPL 196

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15831144 216 IMPVLATVVTLRTIWMF--YMFADVYLLTTKVDILGVYLYKTAFAFN-DLGKAAAISVVLFIIIFAVILLTRKR 286
Cdd:COG0395 197 SKPALATVAIFTFIGAWndFLWPLILLTSPDLRTLPVGLASFQGQYGtDWGLLMAAAVIATLPVLILFLFLQRY 270
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 50-284 3.10e-15

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 73.63  E-value: 3.10e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  50 IESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNR-EFRLRKTARSLVILSYVTP------SIS 122
Cdd:COG0555  33 LKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRyRFPGKRLVDALVDLPFALPtavagiALL 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 123 LVFAWKYMFNngyGIVNYLGVDLLhlyeqaplwFDNPGssfvlVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGA 202
Cdd:COG0555 113 LLFGPNGWLG---QLLAPLGIKVA---------FTPLG-----IVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGA 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 203 NAWQRFRIVTLPAIMPVLATVVTL---RTIWMF---YMFAdvYLLTTKVDILGVYLYkTAFAFNDLGKAAAISVVLFIII 276
Cdd:COG0555 176 SRWQTFRRVILPLLLPALLTGFALafaRALGEFgavIFIA--GNLPMKTEILPLLIY-LKLEEGDYAGATAIALVLLLIS 252


                ....*...
gi 15831144 277 FAVILLTR 284
Cdd:COG0555 253 FLLLLLIN 260
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 53-286 1.57e-14

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 73.56  E-value: 1.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144    53 TFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNRE-FRLRKTARSLVILSYVTPSISLVFAWKYMF 131
Cdd:TIGR03262  36 DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSrIPGKGAFRLVALLPLLAPSLLPAISLIYLF 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   132 NNGyGIVNylgvdllhlyeqaPLWFDNPGSSFVLVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIV 211
Cdd:TIGR03262 116 GNQ-GLLK-------------GLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTV 181

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15831144   212 TLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFI---IIFAVILLTRKR 286
Cdd:TIGR03262 182 TLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGVLLLLpalLAFGIDRAIQRR 259
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 87-281 3.35e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.78  E-value: 3.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144    87 STVLGLAVAMFFNRefRLRKTARSLVILSYVTPSISLVFAWKYMFnngygivnylgvdllhlyeqaplWFDNPGSSFVLV 166
Cdd:pfam00528   1 GIPLGIIAALRRGR--RLDRLLRPLIDLLQALPSFVLAILLVVIA-----------------------ILSILGHGILPA 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   167 VIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVD 246
Cdd:pfam00528  56 IILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG 135

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 15831144   247 iLGVYLYKTAFAFN-DLGKAAAISVVLFIIIFAVIL 281
Cdd:pfam00528 136 -LGLLLIEAILGYDyPEIQGPVLAAALILLLLNLLV 170
malG PRK10998
maltose ABC transporter permease MalG;
187-277 6.61e-08

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 52.79  E-value: 6.61e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  187 QTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMF--YMFADVYLLTTKVDILGV----YLYKTAFAFN 260
Cdd:PRK10998 182 ETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAIteVPVASLLLRDVNSYTLAVgmqqYLNPQNYLWG 261

                         90
                 ....*....|....*..
gi 15831144  261 DLGKAAAISVVLFIIIF 277
Cdd:PRK10998 262 DFAAAAVLSAIPITVVF 278
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 61-222 1.12e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 51.69  E-value: 1.12e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  61 VRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTARSLVILSYVTPSISLVFawkymfnngygivny 140
Cdd:COG0600  51 VELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAP--------------- 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 141 LGVdllhlyeqapLWF-DNPGSSFVLVVIFAiwryFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPV 219
Cdd:COG0600 116 LLI----------LWFgIGEASKIFVIFLGA----FFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPY 181


                ...
gi 15831144 220 LAT 222
Cdd:COG0600 182 IFT 184
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 59-253 1.59e-07

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 51.69  E-value: 1.59e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  59 NYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNR-EFRLRKTA-RSLVILSYVtPSISLVFAWKYMFNNGYG 136
Cdd:COG3833  61 NYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRfRFKGRKAGlLALLLLQMF-PAFLALVALYLLLSALGL 139

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144 137 IVNYLGVDLLHLyeqaplwfdnpGSSfvlvVIFAIWR---YFpyafisflailQTIDKSLYEAAEMDGANAWQRFRIVTL 213
Cdd:COG3833 140 LNTLLGLILVYL-----------GGA----IPFNTWLmkgYF-----------DTIPKELDEAAKIDGASHFQIFFRIIL 193

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 15831144 214 PAIMPVLATV--VTLRTIWMFYMFADVYLLTTKVDILGVYLY 253
Cdd:COG3833 194 PLAKPILAVValLSFIGPWNDFILASVLLRSPENYTLAVGLY 235
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 55-284 2.79e-07

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 50.77  E-value: 2.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   55 VGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLG--LAVAMFFnREFRLRKTARSLVILSYVTPSISLVFAWKYMFN 132
Cdd:PRK15050  57 LGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGvlLALVLAF-VPFPGASLVGRFIDTFVAFPSFLITLAFTFLYG 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  133 NGyGIVNYLGVDLLHLyEQAPLWFDN-PGSsfvlVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIV 211
Cdd:PRK15050 136 SA-GSVNIALQRLFGL-EAPPLDFLYsPGG----VILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRV 209

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15831144  212 TLPAIMPVLATVVTLRTIWMFYMFADVYLLTTK-VDILGVYLYKTAFAFNDLGKAAAISVVLFIIIFAVILLTR 284
Cdd:PRK15050 210 ILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKdVVTLPVLIYSKAIVDFDYPTACAIAVVNLALSLGLYALYR 283
cysT CHL00187
sulfate transport protein; Provisional
 175-226 9.60e-04

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 39.61  E-value: 9.60e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15831144  175 FPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTL 226
Cdd:CHL00187 149 FPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLAL 200
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 59-293 1.15e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 39.67  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   59 NYVRILsDPGF----WHSLWMTVWYTALVVagstVLGLAVAMFFNR-EFRLRKTARSLVILSYVTPSISLVFAWKyMFNN 133
Cdd:PRK09497  52 NYTRLL-DPLYaevlLHSLNMALIATLACL----VLGYPFAWFLAKlPHKVRPLLLFLLIVPFWTNSLIRIYGLK-IFLS 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  134 GYGIVN--YLGVDLLhlyeQAPLWFDNpgsSFVLVVIFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIV 211
Cdd:PRK09497 126 TKGYLNefLLWLGVI----DTPIRIMF---TESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRI 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  212 TLPAIMPVLAT---VVTLRTIWMFYMfADVyLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLfIIIFAVILLTRKRVN 288
Cdd:PRK09497 199 IIPLTMPGIIAgclLVLLPAMGMFYV-SDL-LGGAKNLLIGNVIKSQFLNIRDWPFGAATSITL-TIVMGLMLLVYYRAS 275


                 ....*
gi 15831144  289 LNGNK 293
Cdd:PRK09497 276 KLLNK 280
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 67-214 3.39e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 38.13  E-value: 3.39e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  67 PGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFR-LRKTARSLVILSYVTPSISLVFAWKYMFnngygivNYLGVDL 145
Cdd:COG0765  13 PLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPvLRWLATAYVEFFRGTPLLVQLFFIYFGL-------PLLGIDL 85

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15831144 146 lhlyeqaplwfdnpgSSFVLVVI-FAIWryfpY-AFIS--FLAILQTIDKSLYEAAEMDGANAWQRFRIVTLP 214
Cdd:COG0765  86 ---------------SPFVAAVIaLTLN----SaAYLAeiVRAGIQSVPKGQWEAARALGLSRWQTMRRIILP 139
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 63-285 7.21e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 37.89  E-value: 7.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144   63 ILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAM-FFNREFRLRKTARSLVILSYVTPSISLVFawkymfnngyGIVNYL 141
Cdd:PRK09433  36 VWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARaLYRRRFPGRGLLLRLCAMTLVLPVLVAVF----------GLLSVY 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  142 G-----VDLLHLYeQAPLWFDNPGSSFVLV--VIFAIwryfPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLP 214
Cdd:PRK09433 106 GrsgwlAQLLQAL-GLEWPFSIYGLQGILLahVFFNL----PLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWP 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831144  215 AIMPVLATVVTLrtIWM--FYMFADVYLL------TTkvdiLGVYLYKtAFAFN-DLGKAAAISVVLFIIIFAVILLTRK 285
Cdd:PRK09433 181 YLRRQLPPVAAL--IFMlcFTSFATVLTLgggpkaTT----IELAIYQ-ALSFDfDLARAALLALLQMVLCLGLVLLSQR 253
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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