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Conserved domains on  [gi|15831211|ref|NP_309984|]
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hypothetical protein ECs_1957 [Escherichia coli O157:H7 str. Sakai]

Protein Classification

DUF1364 domain-containing protein( domain architecture ID 10537282)

uncharacterized DUF1364 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbcO pfam07102
Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. ...
 2-94 1.79e-51

Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. coli. Proteins in the entry have been predicted to have the His-Me finger nuclease domain and may act as a Recombinase that participates in DNA repair and replication.


:

Pssm-ID: 429293  Cd Length: 91  Bit Score: 156.42  E-value: 1.79e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831211    2 VNLRKAAKGQICQIRIPGYCNHNPETSVLAHYRLAGTCGTAIKPHDMQAAIACNSCHDLIDGRVKTSDytKEELRLMHAE 81
Cdd:pfam07102  1 SKLRKAARGQECTVRIPGVCNGNPETTVLAHYRLAGTCGTGTKPDDLLAAFACSACHDAIDGRTPILD--AEELELYHAE 78

                         90
                 ....*....|...
gi 15831211   82 GVFRTQEIWRKDG 94
Cdd:pfam07102 79 GVLRTQRALREEG 91
 
Name Accession Description Interval E-value
YbcO pfam07102
Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. ...
 2-94 1.79e-51

Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. coli. Proteins in the entry have been predicted to have the His-Me finger nuclease domain and may act as a Recombinase that participates in DNA repair and replication.


Pssm-ID: 429293  Cd Length: 91  Bit Score: 156.42  E-value: 1.79e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831211    2 VNLRKAAKGQICQIRIPGYCNHNPETSVLAHYRLAGTCGTAIKPHDMQAAIACNSCHDLIDGRVKTSDytKEELRLMHAE 81
Cdd:pfam07102  1 SKLRKAARGQECTVRIPGVCNGNPETTVLAHYRLAGTCGTGTKPDDLLAAFACSACHDAIDGRTPILD--AEELELYHAE 78

                         90
                 ....*....|...
gi 15831211   82 GVFRTQEIWRKDG 94
Cdd:pfam07102 79 GVLRTQRALREEG 91
 
Name Accession Description Interval E-value
YbcO pfam07102
Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. ...
 2-94 1.79e-51

Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. coli. Proteins in the entry have been predicted to have the His-Me finger nuclease domain and may act as a Recombinase that participates in DNA repair and replication.


Pssm-ID: 429293  Cd Length: 91  Bit Score: 156.42  E-value: 1.79e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831211    2 VNLRKAAKGQICQIRIPGYCNHNPETSVLAHYRLAGTCGTAIKPHDMQAAIACNSCHDLIDGRVKTSDytKEELRLMHAE 81
Cdd:pfam07102  1 SKLRKAARGQECTVRIPGVCNGNPETTVLAHYRLAGTCGTGTKPDDLLAAFACSACHDAIDGRTPILD--AEELELYHAE 78

                         90
                 ....*....|...
gi 15831211   82 GVFRTQEIWRKDG 94
Cdd:pfam07102 79 GVLRTQRALREEG 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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