hypothetical protein ECs_1967 [Escherichia coli O157:H7 str. Sakai]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| DUF3950 super family | cl16120 | Domain of unknown function (DUF3950); This presumed domain is functionally uncharacterized. ... |
21-50 | 3.59e-10 | ||
Domain of unknown function (DUF3950); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and viruses, and is approximately 30 amino acids in length. There is a conserved NFS sequence motif. The actual alignment was detected with superfamily member pfam13132: Pssm-ID: 472859 Cd Length: 30 Bit Score: 49.64 E-value: 3.59e-10
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| Name | Accession | Description | Interval | E-value | ||
| DUF3950 | pfam13132 | Domain of unknown function (DUF3950); This presumed domain is functionally uncharacterized. ... |
21-50 | 3.59e-10 | ||
Domain of unknown function (DUF3950); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and viruses, and is approximately 30 amino acids in length. There is a conserved NFS sequence motif. Pssm-ID: 404101 Cd Length: 30 Bit Score: 49.64 E-value: 3.59e-10
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| YlcI_YnfO_N | NF041551 | YlcI/YnfO family protein; The seed alignment of this HMM (86 proteins after ... |
9-50 | 3.08e-04 | ||
YlcI/YnfO family protein; The seed alignment of this HMM (86 proteins after non-redundification to a maximum 80 percent amino acid identity) represents are a large expansion relative to PF13132.9 (3 proteins), named DUF3950. Members are small bacterial proteins, often from prophage regions. This model is short (42 amino acids), which high sequence diversity among seed members, and has relatively high cutoffs for its length. Some family members and additional apparent homologs scoring below the current cutoffs of the model include putative DNA-binding proteins such as HicB family antitoxin components of type II toxin-antitoxin systems. Pssm-ID: 469436 Cd Length: 42 Bit Score: 34.33 E-value: 3.08e-04
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| Name | Accession | Description | Interval | E-value | ||
| DUF3950 | pfam13132 | Domain of unknown function (DUF3950); This presumed domain is functionally uncharacterized. ... |
21-50 | 3.59e-10 | ||
Domain of unknown function (DUF3950); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and viruses, and is approximately 30 amino acids in length. There is a conserved NFS sequence motif. Pssm-ID: 404101 Cd Length: 30 Bit Score: 49.64 E-value: 3.59e-10
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| YlcI_YnfO_N | NF041551 | YlcI/YnfO family protein; The seed alignment of this HMM (86 proteins after ... |
9-50 | 3.08e-04 | ||
YlcI/YnfO family protein; The seed alignment of this HMM (86 proteins after non-redundification to a maximum 80 percent amino acid identity) represents are a large expansion relative to PF13132.9 (3 proteins), named DUF3950. Members are small bacterial proteins, often from prophage regions. This model is short (42 amino acids), which high sequence diversity among seed members, and has relatively high cutoffs for its length. Some family members and additional apparent homologs scoring below the current cutoffs of the model include putative DNA-binding proteins such as HicB family antitoxin components of type II toxin-antitoxin systems. Pssm-ID: 469436 Cd Length: 42 Bit Score: 34.33 E-value: 3.08e-04
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| Blast search parameters | ||||
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