NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1447699512|ref|NP_310076|]
View 

hypothetical protein ECs_2049 [Escherichia coli O157:H7 str. Sakai]

Protein Classification

Toxin_GhoT_OrtT domain-containing protein( domain architecture ID 10566655)

Toxin_GhoT_OrtT domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Toxin_GhoT_OrtT pfam10753
Toxin GhoT_OrtT; GhoT is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. OrtT is ...
 4-57 4.73e-13

Toxin GhoT_OrtT; GhoT is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. OrtT is homologous to GhoT, but it is not part of a TA pair. In this case, it acts as an independent toxin to reduce growth during stress related to amino acid and DNA synthesis.


:

Pssm-ID: 431472  Cd Length: 55  Bit Score: 56.59  E-value: 4.73e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1447699512  4 YQHMLFFYAVMAAIAFLITWFLSHDKK-RIRFLSAFLVGATWPMSFPVALLFSLF 57
Cdd:pfam10753  1 WELILVFYAIGLVISFLITFFLSKDPSlFIRLLAALLIGLTWPMSFPVVLLFSLF 55
 
Name Accession Description Interval E-value
Toxin_GhoT_OrtT pfam10753
Toxin GhoT_OrtT; GhoT is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. OrtT is ...
 4-57 4.73e-13

Toxin GhoT_OrtT; GhoT is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. OrtT is homologous to GhoT, but it is not part of a TA pair. In this case, it acts as an independent toxin to reduce growth during stress related to amino acid and DNA synthesis.


Pssm-ID: 431472  Cd Length: 55  Bit Score: 56.59  E-value: 4.73e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1447699512  4 YQHMLFFYAVMAAIAFLITWFLSHDKK-RIRFLSAFLVGATWPMSFPVALLFSLF 57
Cdd:pfam10753  1 WELILVFYAIGLVISFLITFFLSKDPSlFIRLLAALLIGLTWPMSFPVVLLFSLF 55
 
Name Accession Description Interval E-value
Toxin_GhoT_OrtT pfam10753
Toxin GhoT_OrtT; GhoT is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. OrtT is ...
 4-57 4.73e-13

Toxin GhoT_OrtT; GhoT is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. OrtT is homologous to GhoT, but it is not part of a TA pair. In this case, it acts as an independent toxin to reduce growth during stress related to amino acid and DNA synthesis.


Pssm-ID: 431472  Cd Length: 55  Bit Score: 56.59  E-value: 4.73e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1447699512  4 YQHMLFFYAVMAAIAFLITWFLSHDKK-RIRFLSAFLVGATWPMSFPVALLFSLF 57
Cdd:pfam10753  1 WELILVFYAIGLVISFLITFFLSKDPSlFIRLLAALLIGLTWPMSFPVVLLFSLF 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH