NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15831484|ref|NP_310257|]
View 

hypothetical protein ECs_2230 [Escherichia coli O157:H7 str. Sakai]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_fiber_C super family cl06057
Putative prophage tail fibre C-terminus; This family represents the C-terminus of a prophage ...
 28-89 8.47e-30

Putative prophage tail fibre C-terminus; This family represents the C-terminus of a prophage tail fibre protein found mostly in E. coli. All family members contain a conserved RLGP motif.


The actual alignment was detected with superfamily member pfam06820:

Pssm-ID: 148432  Cd Length: 64  Bit Score: 100.38  E-value: 8.47e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15831484   28 AQLRLGPADILESDENGIIPEQD-RVITQVVIL-DADKKQIQCVVRPLQILRADGTWENIGGMK 89
Cdd:pfam06820  1 AQFRLGPADIIESDEHGIFPEQDgALITGLTFLaDADKKQIQCFFQHLQILFADGPWEDIGGLD 64
 
Name Accession Description Interval E-value
Phage_fiber_C pfam06820
Putative prophage tail fibre C-terminus; This family represents the C-terminus of a prophage ...
 28-89 8.47e-30

Putative prophage tail fibre C-terminus; This family represents the C-terminus of a prophage tail fibre protein found mostly in E. coli. All family members contain a conserved RLGP motif.


Pssm-ID: 148432  Cd Length: 64  Bit Score: 100.38  E-value: 8.47e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15831484   28 AQLRLGPADILESDENGIIPEQD-RVITQVVIL-DADKKQIQCVVRPLQILRADGTWENIGGMK 89
Cdd:pfam06820  1 AQFRLGPADIIESDEHGIFPEQDgALITGLTFLaDADKKQIQCFFQHLQILFADGPWEDIGGLD 64
 
Name Accession Description Interval E-value
Phage_fiber_C pfam06820
Putative prophage tail fibre C-terminus; This family represents the C-terminus of a prophage ...
 28-89 8.47e-30

Putative prophage tail fibre C-terminus; This family represents the C-terminus of a prophage tail fibre protein found mostly in E. coli. All family members contain a conserved RLGP motif.


Pssm-ID: 148432  Cd Length: 64  Bit Score: 100.38  E-value: 8.47e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15831484   28 AQLRLGPADILESDENGIIPEQD-RVITQVVIL-DADKKQIQCVVRPLQILRADGTWENIGGMK 89
Cdd:pfam06820  1 AQFRLGPADIIESDEHGIFPEQDgALITGLTFLaDADKKQIQCFFQHLQILFADGPWEDIGGLD 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH