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Conserved domains on  [gi|15831789|ref|NP_310562|]
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inner membrane protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

YebO family protein( domain architecture ID 10623527)

YebO family protein similar to Escherichia coli uncharacterized protein YebO

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YebO pfam13974
YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage ...
 24-95 2.78e-30

YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage origin as it is found in Swiss:Q9MCU2 and Swiss:Q9MCS4. The protein is also found in a variety of enteric bacteria.


:

Pssm-ID: 433617  Cd Length: 78  Bit Score: 102.43  E-value: 2.78e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15831789   24 IGLILWFFINRASSRTNEQIELLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSveDEDIIRLVAER 95
Cdd:pfam13974  9 VGLIVWFFVNRASVRANEQIALLQELLEQQKQQNALLRRLCEANAPEKEPAPEDEAAAS--SLDFKRLIPER 78
 
Name Accession Description Interval E-value
YebO pfam13974
YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage ...
 24-95 2.78e-30

YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage origin as it is found in Swiss:Q9MCU2 and Swiss:Q9MCS4. The protein is also found in a variety of enteric bacteria.


Pssm-ID: 433617  Cd Length: 78  Bit Score: 102.43  E-value: 2.78e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15831789   24 IGLILWFFINRASSRTNEQIELLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSveDEDIIRLVAER 95
Cdd:pfam13974  9 VGLIVWFFVNRASVRANEQIALLQELLEQQKQQNALLRRLCEANAPEKEPAPEDEAAAS--SLDFKRLIPER 78
 
Name Accession Description Interval E-value
YebO pfam13974
YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage ...
 24-95 2.78e-30

YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage origin as it is found in Swiss:Q9MCU2 and Swiss:Q9MCS4. The protein is also found in a variety of enteric bacteria.


Pssm-ID: 433617  Cd Length: 78  Bit Score: 102.43  E-value: 2.78e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15831789   24 IGLILWFFINRASSRTNEQIELLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSveDEDIIRLVAER 95
Cdd:pfam13974  9 VGLIVWFFVNRASVRANEQIALLQELLEQQKQQNALLRRLCEANAPEKEPAPEDEAAAS--SLDFKRLIPER 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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