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Conserved domains on  [gi|15831855|ref|NP_310628|]
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flagellar class II regulon transcriptional activator [Escherichia coli O157:H7 str. Sakai]

Protein Classification

flagellar transcriptional regulator FlhC( domain architecture ID 10014065)

flagellar transcriptional regulator FlhC functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12722 PRK12722
flagellar transcriptional regulator FlhC;
1-187 5.86e-147

flagellar transcriptional regulator FlhC;


:

Pssm-ID: 237181  Cd Length: 187  Bit Score: 405.48  E-value: 5.86e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855    1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAW 80
Cdd:PRK12722   1 MSEKSVVQEARDIQLAMELITLGARLQVLESETQLSRERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855   81 QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLC 160
Cdd:PRK12722  81 QFLLKTGGCSGIEAVIKAYRLYLEQCPQAEEEPLLSLTRAWTLVRFVDSGMLQLSSCNCCGGHFVTHAHDPVGSFVCGLC 160

                        170       180
                 ....*....|....*....|....*..
gi 15831855  161 QPPSRAVKRRKLSQNPADIIPQLLDEQ 187
Cdd:PRK12722 161 QPPSRAGKTRKLSAAAADIAPQLLDEQ 187
 
Name Accession Description Interval E-value
PRK12722 PRK12722
flagellar transcriptional regulator FlhC;
1-187 5.86e-147

flagellar transcriptional regulator FlhC;


Pssm-ID: 237181  Cd Length: 187  Bit Score: 405.48  E-value: 5.86e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855    1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAW 80
Cdd:PRK12722   1 MSEKSVVQEARDIQLAMELITLGARLQVLESETQLSRERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855   81 QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLC 160
Cdd:PRK12722  81 QFLLKTGGCSGIEAVIKAYRLYLEQCPQAEEEPLLSLTRAWTLVRFVDSGMLQLSSCNCCGGHFVTHAHDPVGSFVCGLC 160

                        170       180
                 ....*....|....*....|....*..
gi 15831855  161 QPPSRAVKRRKLSQNPADIIPQLLDEQ 187
Cdd:PRK12722 161 QPPSRAGKTRKLSAAAADIAPQLLDEQ 187
FlhC pfam05280
Flagellar transcriptional activator (FlhC); This family consists of several bacterial ...
 3-173 3.78e-119

Flagellar transcriptional activator (FlhC); This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.


Pssm-ID: 428407  Cd Length: 171  Bit Score: 334.57  E-value: 3.78e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855     3 EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQF 82
Cdd:pfam05280   1 NKSVLQEARQIQLAIELIELGARLQVLESETSLSRERLLRLYKEVRGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIYRF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855    83 LLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQP 162
Cdd:pfam05280  81 LIRHGGCPGIEALVKAYRLYLEQIEADGEEPVLSFTRAWTLVRFFESGMLQLTSCSRCGGEFVTHAHDPTHNFVCGLCQP 160

                         170
                  ....*....|.
gi 15831855   163 PSRAVKRRKLS 173
Cdd:pfam05280 161 PSRAGKTRKAA 171
 
Name Accession Description Interval E-value
PRK12722 PRK12722
flagellar transcriptional regulator FlhC;
1-187 5.86e-147

flagellar transcriptional regulator FlhC;


Pssm-ID: 237181  Cd Length: 187  Bit Score: 405.48  E-value: 5.86e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855    1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAW 80
Cdd:PRK12722   1 MSEKSVVQEARDIQLAMELITLGARLQVLESETQLSRERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855   81 QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLC 160
Cdd:PRK12722  81 QFLLKTGGCSGIEAVIKAYRLYLEQCPQAEEEPLLSLTRAWTLVRFVDSGMLQLSSCNCCGGHFVTHAHDPVGSFVCGLC 160

                        170       180
                 ....*....|....*....|....*..
gi 15831855  161 QPPSRAVKRRKLSQNPADIIPQLLDEQ 187
Cdd:PRK12722 161 QPPSRAGKTRKLSAAAADIAPQLLDEQ 187
FlhC pfam05280
Flagellar transcriptional activator (FlhC); This family consists of several bacterial ...
 3-173 3.78e-119

Flagellar transcriptional activator (FlhC); This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.


Pssm-ID: 428407  Cd Length: 171  Bit Score: 334.57  E-value: 3.78e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855     3 EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQF 82
Cdd:pfam05280   1 NKSVLQEARQIQLAIELIELGARLQVLESETSLSRERLLRLYKEVRGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIYRF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855    83 LLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQP 162
Cdd:pfam05280  81 LIRHGGCPGIEALVKAYRLYLEQIEADGEEPVLSFTRAWTLVRFFESGMLQLTSCSRCGGEFVTHAHDPTHNFVCGLCQP 160

                         170
                  ....*....|.
gi 15831855   163 PSRAVKRRKLS 173
Cdd:pfam05280 161 PSRAGKTRKAA 171
PRK12860 PRK12860
flagellar transcriptional regulator FlhC;
1-189 1.33e-106

flagellar transcriptional regulator FlhC;


Pssm-ID: 237237  Cd Length: 189  Bit Score: 303.60  E-value: 1.33e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855    1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAW 80
Cdd:PRK12860   1 MLRKSLLQDAQEIRLAIELIGLGARLQVLESETTLSRDRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15831855   81 QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLC 160
Cdd:PRK12860  81 RFLKNEARCSGLDALTKGYRLYLEHCCATGTEPVLDLTRAWTLVRFFDAGMLQLARCCRCGGKFVTHAHDLRHNFVCGLC 160

                        170       180
                 ....*....|....*....|....*....
gi 15831855  161 QPPSRAVKRRKLSQNPADIIPQLLDEQRV 189
Cdd:PRK12860 161 QPPSRAGKTKKAAPAAADALAAAARAQAA 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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