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Conserved domains on  [gi|15832241|ref|NP_311014|]
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phage replication protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

replication protein( domain architecture ID 10019397)

replication protein belonging to the phage replication protein O family, similar to Escherichia virus Lambda replication protein O that is necessary for the bidirectional replication of DNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
phage_O_Nterm TIGR01610
phage replication protein O, N-terminal domain; This model represents the N-terminal region of ...
 23-115 4.50e-47

phage replication protein O, N-terminal domain; This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]


:

Pssm-ID: 273715  Cd Length: 95  Bit Score: 153.46  E-value: 4.50e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832241    23 ADLDDGYARLSNMLIEAYSGADLTKRQFKVLLAILRKTYGWNKPMDRITDSQLSEITKLPVKRCNEAKLELVRMNIIKQQ 102
Cdd:TIGR01610   1 ADLSNGYTRMANELQEALPGADLSGREFRVLLAIIRLTYGWNKKQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQ 80

                          90
                  ....*....|....*
gi 15832241   103 G--GMFGPNKNISEW 115
Cdd:TIGR01610  81 GmmGIVGVNTPLSEW 95
 
Name Accession Description Interval E-value
phage_O_Nterm TIGR01610
phage replication protein O, N-terminal domain; This model represents the N-terminal region of ...
 23-115 4.50e-47

phage replication protein O, N-terminal domain; This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273715  Cd Length: 95  Bit Score: 153.46  E-value: 4.50e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832241    23 ADLDDGYARLSNMLIEAYSGADLTKRQFKVLLAILRKTYGWNKPMDRITDSQLSEITKLPVKRCNEAKLELVRMNIIKQQ 102
Cdd:TIGR01610   1 ADLSNGYTRMANELQEALPGADLSGREFRVLLAIIRLTYGWNKKQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQ 80

                          90
                  ....*....|....*
gi 15832241   103 G--GMFGPNKNISEW 115
Cdd:TIGR01610  81 GmmGIVGVNTPLSEW 95
Phage_rep_O pfam04492
Bacteriophage replication protein O; Replication protein O is necessary for the initiation of ...
 24-115 7.10e-43

Bacteriophage replication protein O; Replication protein O is necessary for the initiation of bacteriophage DNA replication. Protein O interacts with the lambda replication origin, and also with replication protein P to form an oligomer. It is speculated that the N-terminal half interacts with the replication origin while the C terminal half mediates protein-protein interaction (annotation of Swiss: P14815).


Pssm-ID: 461329  Cd Length: 92  Bit Score: 142.76  E-value: 7.10e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832241    24 DLDDGYARLSNMLIEAYSGADLTKRQFKVLLAILRKTYGWNKPMDRITDSQLSEITKLPVKRCNEAKLELVRMNIIKQQG 103
Cdd:pfam04492   1 DLDDGYTRLANELLEALIRADLTKRQLKILLAVIRKTYGFNKKSDWISNSQLAELTGISRTHVSKALKELIRMNVIIKDG 80

                          90
                  ....*....|..
gi 15832241   104 GMFGPNKNISEW 115
Cdd:pfam04492  81 RKVGVNKNYSEW 92
 
Name Accession Description Interval E-value
phage_O_Nterm TIGR01610
phage replication protein O, N-terminal domain; This model represents the N-terminal region of ...
 23-115 4.50e-47

phage replication protein O, N-terminal domain; This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273715  Cd Length: 95  Bit Score: 153.46  E-value: 4.50e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832241    23 ADLDDGYARLSNMLIEAYSGADLTKRQFKVLLAILRKTYGWNKPMDRITDSQLSEITKLPVKRCNEAKLELVRMNIIKQQ 102
Cdd:TIGR01610   1 ADLSNGYTRMANELQEALPGADLSGREFRVLLAIIRLTYGWNKKQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQ 80

                          90
                  ....*....|....*
gi 15832241   103 G--GMFGPNKNISEW 115
Cdd:TIGR01610  81 GmmGIVGVNTPLSEW 95
Phage_rep_O pfam04492
Bacteriophage replication protein O; Replication protein O is necessary for the initiation of ...
 24-115 7.10e-43

Bacteriophage replication protein O; Replication protein O is necessary for the initiation of bacteriophage DNA replication. Protein O interacts with the lambda replication origin, and also with replication protein P to form an oligomer. It is speculated that the N-terminal half interacts with the replication origin while the C terminal half mediates protein-protein interaction (annotation of Swiss: P14815).


Pssm-ID: 461329  Cd Length: 92  Bit Score: 142.76  E-value: 7.10e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832241    24 DLDDGYARLSNMLIEAYSGADLTKRQFKVLLAILRKTYGWNKPMDRITDSQLSEITKLPVKRCNEAKLELVRMNIIKQQG 103
Cdd:pfam04492   1 DLDDGYTRLANELLEALIRADLTKRQLKILLAVIRKTYGFNKKSDWISNSQLAELTGISRTHVSKALKELIRMNVIIKDG 80

                          90
                  ....*....|..
gi 15832241   104 GMFGPNKNISEW 115
Cdd:pfam04492  81 RKVGVNKNYSEW 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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