|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10551 |
PRK10551 |
cyclic di-GMP phosphodiesterase; |
1-518 |
0e+00 |
|
cyclic di-GMP phosphodiesterase;
Pssm-ID: 182541 [Multi-domain] Cd Length: 518 Bit Score: 986.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 1 MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCKQAN 80
Cdd:PRK10551 1 MFTRAPSSGRKILLTSIVAGVMIALLFSCLQFLLLWHKREVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQVN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 81 PELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG 160
Cdd:PRK10551 81 PELTSRAAFSLNVRAFLLVKDKKAFCSSATGEMNTPLSELIPAIDINKPVDMAILPGTPMMPNKPAIVIWYRNPLLKNSG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 161 VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAF 240
Cdd:PRK10551 161 VFATLNLNLTPYLLYTSRQEDFDGIALIIGNTALSTFSSRLMNVNELPDMPLRETTIPGYPLTIRLYADSWTANDIWYAL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 241 LLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAES 320
Cdd:PRK10551 241 LLGLLSGILVGLLCYYLLSLRMRPGKEILTGIKRGQFYVEYQPVVDTQTLRVTGLEALLRWRHPTAGEIPPDAFINYAEA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 321 QKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLKEQEAT 400
Cdd:PRK10551 321 QKLIVPLTQHLFELIARDAAELQKVLPVGAKLGINISPAHLHSDSFKADVQRLLASLPADHFQIVLEITERDMVQEEEAT 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 401 QLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQ 480
Cdd:PRK10551 401 KLFAWLHSQGIEIAIDDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGVETPEQ 480
|
490 500 510
....*....|....*....|....*....|....*...
gi 15832322 481 ARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW 518
Cdd:PRK10551 481 ARWLRERGVNFLQGYWISRPLPLEDFVRWLKEPYTPQW 518
|
|
| YjcC |
COG4943 |
Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal ... |
10-517 |
3.36e-109 |
|
Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms];
Pssm-ID: 443970 [Multi-domain] Cd Length: 528 Bit Score: 334.96 E-value: 3.36e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 10 RKLLLTCIVAGVMIAILVSCLQFLVAWH---KHEVKY-DTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCKQANPELTA 85
Cdd:COG4943 6 RRLLSLATLLALLAALLPLLLSLWLAQIqarRREREQlESYAQRALARAERVFDQARSALDELNALPGDPCSPAHLAALR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 86 RAAFSM-NVRTFVLVKDKKTFCSSAtGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNpllknsgVFAA 164
Cdd:COG4943 86 RLVFSSrYVRDIGYVRDGRLLCSSL-GKLSKPVPLPPPDYVTADGYRLWLNVDNPLDPGRPMLIVGRGN-------YVVV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 165 LNlnltpSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYA------DDWT------ 232
Cdd:COG4943 158 ID-----PAAFIDVLSPQPGISLALLATNGGHLFASSGNPDPALLSRLLRGPSSWFIQGDRLYAsacspqYPICvvaaap 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 233 --------WNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHP 304
Cdd:COG4943 233 lagllalwRQLLLLLLPLGLLLSLLLGLLVLRLLRRRLSPRRRLRRAIKRREFYVHYQPIVDLKTGRCVGAEALVRWRDP 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 305 VAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPvGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQI 384
Cdd:COG4943 313 DGSVISPDIFIPLAEQSGLISPLTRQVIEQVFRDLGDLLAADP-DFHISINLSASDLLSPRFLDDLERLLARTGVAPQQI 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 385 VLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAK 464
Cdd:COG4943 392 VLEITERGFIDPAKARAVIAALREAGHRIAIDDFGTGYSSLSYLQTLPVDILKIDKSFVDAIGTDSANSAVVPHIIEMAK 471
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 15832322 465 RLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQ 517
Cdd:COG4943 472 TLNLDVVAEGVETEEQADYLRARGVQYGQGWLFAKPLPAEEFIAWLAAQRAPA 524
|
|
| EAL |
smart00052 |
Putative diguanylate phosphodiesterase; Putative diguanylate phosphodiesterase, present in a ... |
266-505 |
1.90e-96 |
|
Putative diguanylate phosphodiesterase; Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Pssm-ID: 214491 [Multi-domain] Cd Length: 242 Bit Score: 292.20 E-value: 1.90e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 266 REIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKV 345
Cdd:smart00052 2 RELRQALENGQFLLYYQPIVSLRTGRLVGVEALIRWQHPEGGIISPDEFIPLAEETGLIVPLGRWVLEQACQQLAEWQAQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 346 LPVGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAW-LHSVGVEIAIDDFGTGHSA 424
Cdd:smart00052 82 GPPPLLISINLSARQLISPDLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQrLRELGVRIALDDFGTGYSS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 425 LIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLD 504
Cdd:smart00052 162 LSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 241
|
.
gi 15832322 505 D 505
Cdd:smart00052 242 D 242
|
|
| EAL |
cd01948 |
EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL ... |
266-505 |
9.37e-88 |
|
EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Pssm-ID: 238923 [Multi-domain] Cd Length: 240 Bit Score: 269.80 E-value: 9.37e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 266 REIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKV 345
Cdd:cd01948 1 ADLRRALERGEFELYYQPIVDLRTGRIVGYEALLRWRHPEGGLISPAEFIPLAEETGLIVELGRWVLEEACRQLARWQAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 346 LPvGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLKE-QEATQLFAWLHSVGVEIAIDDFGTGHSA 424
Cdd:cd01948 81 GP-DLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDlEEALATLRRLRALGVRIALDDFGTGYSS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 425 LIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLD 504
Cdd:cd01948 160 LSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239
|
.
gi 15832322 505 D 505
Cdd:cd01948 240 E 240
|
|
| EAL |
pfam00563 |
EAL domain; This domain is found in diverse bacterial signaling proteins. It is called EAL ... |
266-500 |
1.01e-79 |
|
EAL domain; This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Pssm-ID: 425752 [Multi-domain] Cd Length: 235 Bit Score: 248.77 E-value: 1.01e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 266 REIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEkv 345
Cdd:pfam00563 2 RALRRALENGEFVLYYQPIVDLRTGRVVGYEALLRWQHPDGGLISPARFLPLAEELGLIAELDRWVLEQALADLAQLQ-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 346 LPVGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLKE-QEATQLFAWLHSVGVEIAIDDFGTGHSA 424
Cdd:pfam00563 80 LGPDIKLSINLSPASLADPGFLELLRALLKQAGPPPSRLVLEITESDLLARlEALREVLKRLRALGIRIALDDFGTGYSS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15832322 425 LIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRP 500
Cdd:pfam00563 160 LSYLLRLPPDFVKIDRSLIADIDKDGEARAIVRALIALAHSLGIKVVAEGVETEEQLEALRELGCDLVQGYYFSKP 235
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10551 |
PRK10551 |
cyclic di-GMP phosphodiesterase; |
1-518 |
0e+00 |
|
cyclic di-GMP phosphodiesterase;
Pssm-ID: 182541 [Multi-domain] Cd Length: 518 Bit Score: 986.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 1 MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCKQAN 80
Cdd:PRK10551 1 MFTRAPSSGRKILLTSIVAGVMIALLFSCLQFLLLWHKREVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQVN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 81 PELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG 160
Cdd:PRK10551 81 PELTSRAAFSLNVRAFLLVKDKKAFCSSATGEMNTPLSELIPAIDINKPVDMAILPGTPMMPNKPAIVIWYRNPLLKNSG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 161 VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAF 240
Cdd:PRK10551 161 VFATLNLNLTPYLLYTSRQEDFDGIALIIGNTALSTFSSRLMNVNELPDMPLRETTIPGYPLTIRLYADSWTANDIWYAL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 241 LLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAES 320
Cdd:PRK10551 241 LLGLLSGILVGLLCYYLLSLRMRPGKEILTGIKRGQFYVEYQPVVDTQTLRVTGLEALLRWRHPTAGEIPPDAFINYAEA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 321 QKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLKEQEAT 400
Cdd:PRK10551 321 QKLIVPLTQHLFELIARDAAELQKVLPVGAKLGINISPAHLHSDSFKADVQRLLASLPADHFQIVLEITERDMVQEEEAT 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 401 QLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQ 480
Cdd:PRK10551 401 KLFAWLHSQGIEIAIDDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGVETPEQ 480
|
490 500 510
....*....|....*....|....*....|....*...
gi 15832322 481 ARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW 518
Cdd:PRK10551 481 ARWLRERGVNFLQGYWISRPLPLEDFVRWLKEPYTPQW 518
|
|
| YjcC |
COG4943 |
Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal ... |
10-517 |
3.36e-109 |
|
Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms];
Pssm-ID: 443970 [Multi-domain] Cd Length: 528 Bit Score: 334.96 E-value: 3.36e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 10 RKLLLTCIVAGVMIAILVSCLQFLVAWH---KHEVKY-DTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCKQANPELTA 85
Cdd:COG4943 6 RRLLSLATLLALLAALLPLLLSLWLAQIqarRREREQlESYAQRALARAERVFDQARSALDELNALPGDPCSPAHLAALR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 86 RAAFSM-NVRTFVLVKDKKTFCSSAtGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNpllknsgVFAA 164
Cdd:COG4943 86 RLVFSSrYVRDIGYVRDGRLLCSSL-GKLSKPVPLPPPDYVTADGYRLWLNVDNPLDPGRPMLIVGRGN-------YVVV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 165 LNlnltpSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYA------DDWT------ 232
Cdd:COG4943 158 ID-----PAAFIDVLSPQPGISLALLATNGGHLFASSGNPDPALLSRLLRGPSSWFIQGDRLYAsacspqYPICvvaaap 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 233 --------WNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHP 304
Cdd:COG4943 233 lagllalwRQLLLLLLPLGLLLSLLLGLLVLRLLRRRLSPRRRLRRAIKRREFYVHYQPIVDLKTGRCVGAEALVRWRDP 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 305 VAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPvGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQI 384
Cdd:COG4943 313 DGSVISPDIFIPLAEQSGLISPLTRQVIEQVFRDLGDLLAADP-DFHISINLSASDLLSPRFLDDLERLLARTGVAPQQI 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 385 VLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAK 464
Cdd:COG4943 392 VLEITERGFIDPAKARAVIAALREAGHRIAIDDFGTGYSSLSYLQTLPVDILKIDKSFVDAIGTDSANSAVVPHIIEMAK 471
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 15832322 465 RLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQ 517
Cdd:COG4943 472 TLNLDVVAEGVETEEQADYLRARGVQYGQGWLFAKPLPAEEFIAWLAAQRAPA 524
|
|
| EAL |
smart00052 |
Putative diguanylate phosphodiesterase; Putative diguanylate phosphodiesterase, present in a ... |
266-505 |
1.90e-96 |
|
Putative diguanylate phosphodiesterase; Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Pssm-ID: 214491 [Multi-domain] Cd Length: 242 Bit Score: 292.20 E-value: 1.90e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 266 REIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKV 345
Cdd:smart00052 2 RELRQALENGQFLLYYQPIVSLRTGRLVGVEALIRWQHPEGGIISPDEFIPLAEETGLIVPLGRWVLEQACQQLAEWQAQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 346 LPVGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAW-LHSVGVEIAIDDFGTGHSA 424
Cdd:smart00052 82 GPPPLLISINLSARQLISPDLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQrLRELGVRIALDDFGTGYSS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 425 LIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLD 504
Cdd:smart00052 162 LSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 241
|
.
gi 15832322 505 D 505
Cdd:smart00052 242 D 242
|
|
| EAL |
cd01948 |
EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL ... |
266-505 |
9.37e-88 |
|
EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Pssm-ID: 238923 [Multi-domain] Cd Length: 240 Bit Score: 269.80 E-value: 9.37e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 266 REIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKV 345
Cdd:cd01948 1 ADLRRALERGEFELYYQPIVDLRTGRIVGYEALLRWRHPEGGLISPAEFIPLAEETGLIVELGRWVLEEACRQLARWQAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 346 LPvGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLKE-QEATQLFAWLHSVGVEIAIDDFGTGHSA 424
Cdd:cd01948 81 GP-DLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDlEEALATLRRLRALGVRIALDDFGTGYSS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 425 LIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLD 504
Cdd:cd01948 160 LSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239
|
.
gi 15832322 505 D 505
Cdd:cd01948 240 E 240
|
|
| COG5001 |
COG5001 |
Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain ... |
270-512 |
4.13e-81 |
|
Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain [Signal transduction mechanisms];
Pssm-ID: 444025 [Multi-domain] Cd Length: 678 Bit Score: 266.26 E-value: 4.13e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 270 TAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVG 349
Cdd:COG5001 432 RALERGELELHYQPQVDLATGRIVGAEALLRWQHPERGLVSPAEFIPLAEETGLIVPLGEWVLREACRQLAAWQDAGLPD 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 350 VKFGINIAPDHLHSESFKANIQKLL--TSLPAHHfqIVLEITERDMLKEQEAT-QLFAWLHSVGVEIAIDDFGTGHSALI 426
Cdd:COG5001 512 LRVAVNLSARQLRDPDLVDRVRRALaeTGLPPSR--LELEITESALLEDPEEAlETLRALRALGVRIALDDFGTGYSSLS 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 427 YLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDF 506
Cdd:COG5001 590 YLKRLPVDTLKIDRSFVRDLAEDPDDAAIVRAIIALAHSLGLEVVAEGVETEEQLEFLRELGCDYAQGYLFSRPLPAEEL 669
|
....*.
gi 15832322 507 VRWLKK 512
Cdd:COG5001 670 EALLRA 675
|
|
| EAL |
COG2200 |
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) ... |
261-511 |
6.15e-81 |
|
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms];
Pssm-ID: 441802 [Multi-domain] Cd Length: 576 Bit Score: 263.18 E-value: 6.15e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 261 RMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAA 340
Cdd:COG2200 326 RLALESELREALEEGELRLYYQPIVDLRTGRVVGYEALLRWRHPDGGLISPAEFIPAAERSGLIVELDRWVLERALRQLA 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 341 ELEKVLPvGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLKE-QEATQLFAWLHSVGVEIAIDDFG 419
Cdd:COG2200 406 RWPERGL-DLRLSVNLSARSLLDPDFLERLLELLAEYGLPPERLVLEITESALLEDlEAAIELLARLRALGVRIALDDFG 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 420 TGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISR 499
Cdd:COG2200 485 TGYSSLSYLKRLPPDYLKIDRSFVRDIARDPRDQAIVRAIVALAHRLGLKVVAEGVETEEQLEALRELGCDYAQGYLFGR 564
|
250
....*....|..
gi 15832322 500 PLPLDDFVRWLK 511
Cdd:COG2200 565 PLPLEELEALLR 576
|
|
| EAL |
pfam00563 |
EAL domain; This domain is found in diverse bacterial signaling proteins. It is called EAL ... |
266-500 |
1.01e-79 |
|
EAL domain; This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Pssm-ID: 425752 [Multi-domain] Cd Length: 235 Bit Score: 248.77 E-value: 1.01e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 266 REIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEkv 345
Cdd:pfam00563 2 RALRRALENGEFVLYYQPIVDLRTGRVVGYEALLRWQHPDGGLISPARFLPLAEELGLIAELDRWVLEQALADLAQLQ-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 346 LPVGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLKE-QEATQLFAWLHSVGVEIAIDDFGTGHSA 424
Cdd:pfam00563 80 LGPDIKLSINLSPASLADPGFLELLRALLKQAGPPPSRLVLEITESDLLARlEALREVLKRLRALGIRIALDDFGTGYSS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15832322 425 LIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRP 500
Cdd:pfam00563 160 LSYLLRLPPDFVKIDRSLIADIDKDGEARAIVRALIALAHSLGIKVVAEGVETEEQLEALRELGCDLVQGYYFSKP 235
|
|
| PRK10060 |
PRK10060 |
cyclic di-GMP phosphodiesterase; |
271-511 |
1.13e-45 |
|
cyclic di-GMP phosphodiesterase;
Pssm-ID: 236645 [Multi-domain] Cd Length: 663 Bit Score: 169.86 E-value: 1.13e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 271 AIKREQFYVAYQPVVDTQAlRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELeKVLPVGV 350
Cdd:PRK10060 416 ALENDQLVIHYQPKITWRG-EVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVMLDVVRQVAKW-RDKGINL 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 351 KFGINIAPDHLHSESFKANIQKLLTSLPAHHFQIVLEITERDMLK-EQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLE 429
Cdd:PRK10060 494 RVAVNVSARQLADQTIFTALKQALQELNFEYCPIDVELTESCLIEnEELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLA 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 430 RFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRW 509
Cdd:PRK10060 574 RFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERW 653
|
..
gi 15832322 510 LK 511
Cdd:PRK10060 654 YK 655
|
|
| PRK13561 |
PRK13561 |
putative diguanylate cyclase; Provisional |
267-513 |
6.52e-42 |
|
putative diguanylate cyclase; Provisional
Pssm-ID: 184143 [Multi-domain] Cd Length: 651 Bit Score: 159.11 E-value: 6.52e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 267 EIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEK-- 344
Cdd:PRK13561 404 DILNALENHQFAIWLQPQVEMRSGKLVSAEALLRMQQPDGSWDLPEGLIDRIESCGLMVTVGHWVLEESCRLLAAWQErg 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 345 -VLPVGVkfgiNIAPDHLHSESFKANIQKLLtslpaHHFQI-----VLEITE-RDMLKEQEATQLFAWLHSVGVEIAIDD 417
Cdd:PRK13561 484 iMLPLSV----NLSALQLMHPNMVADMLELL-----TRYRIqpgtlILEVTEsRRIDDPHAAVAILRPLRNAGVRVALDD 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 418 FGTGHSALIYLERFT---LDYLKIDRGFINAIGTEtitSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQG 494
Cdd:PRK13561 555 FGMGYAGLRQLQHMKslpIDVLKIDKMFVDGLPED---DSMVAAIIMLAQSLNLQVIAEGVETEAQRDWLLKAGVGIAQG 631
|
250 260
....*....|....*....|
gi 15832322 495 YWISRPLPLDDF-VRWLKKP 513
Cdd:PRK13561 632 FLFARALPIEIFeERYLEEK 651
|
|
| CSS-motif |
pfam12792 |
CSS motif domain associated with EAL; This family with its characteriztic highly conserved CSS ... |
39-241 |
8.04e-42 |
|
CSS motif domain associated with EAL; This family with its characteriztic highly conserved CSS sequence motif is found N-terminal to the EAL, pfam00563, domain in many cyclic diguanylate phosphodiesterases.
Pssm-ID: 463709 Cd Length: 209 Bit Score: 148.83 E-value: 8.04e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 39 HEVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCKQAN-PELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPL 117
Cdd:pfam12792 1 EQEQLDAFAERALRRLESVLDQADQALDRLLPLTGQPCSPAHlAELRRIVAFSPYVRDVGLVKNGRLYCSSLWGELDTPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 118 NELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSgVFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALStF 197
Cdd:pfam12792 81 PLLPPDLTTPPGVRLWLLRGTPLVPGRPALVLRRGGYGVVID-PGVFIDVQYLPGLLAAVSQPDGRLLALVVGDDALL-F 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 15832322 198 SSRLMNVNELTDMPVR-------ETKIAGIPLTVRLYADDWTWNDVWYAFL 241
Cdd:pfam12792 159 DGRLHSLAEPAPGTARsggalyaRARSTRYPLTVVVYAPRASLLANWRQLL 209
|
|
| PRK11829 |
PRK11829 |
biofilm formation regulator HmsP; Provisional |
261-506 |
4.09e-36 |
|
biofilm formation regulator HmsP; Provisional
Pssm-ID: 183329 [Multi-domain] Cd Length: 660 Bit Score: 142.39 E-value: 4.09e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 261 RMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAA 340
Cdd:PRK11829 403 RLTQENDLLQAIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILA 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 341 ELEKvLPVGVKFGINIAPDHLHSESFkanIQKLLTSLPAHHF---QIVLEITERDMLKE-QEATQLFAWLHSVGVEIAID 416
Cdd:PRK11829 483 DWKA-RGVSLPLSVNISGLQVQNKQF---LPHLKTLISHYHIdpqQLLLEITETAQIQDlDEALRLLRELQGLGLLIALD 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 417 DFGTGHSALIYL---ERFTLDYLKIDRGFINAIgtetitsPVLDAVL----TLAKRLNMLTVAEGVETPEQARWLSERGV 489
Cdd:PRK11829 559 DFGIGYSSLRYLnhlKSLPIHMIKLDKSFVKNL-------PEDDAIAriisCVSDVLKVRVMAEGVETEEQRQWLLEHGI 631
|
250
....*....|....*..
gi 15832322 490 NFMQGYWISRPLPLDDF 506
Cdd:PRK11829 632 QCGQGFLFSPPLPRAEF 648
|
|
| PRK11359 |
PRK11359 |
cyclic-di-GMP phosphodiesterase; Provisional |
261-511 |
1.02e-33 |
|
cyclic-di-GMP phosphodiesterase; Provisional
Pssm-ID: 183097 [Multi-domain] Cd Length: 799 Bit Score: 135.67 E-value: 1.02e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 261 RMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAA 340
Cdd:PRK11359 541 RLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLA 620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 341 ELEKV---LPVgvkFGINIAPDHLHSESFKANIQKLLT--SLPAHhfQIVLEITERDMLkeQEATQLFAWLHSV---GVE 412
Cdd:PRK11359 621 EWRSQnihIPA---LSVNLSALHFRSNQLPNQVSDAMQawGIDGH--QLTVEITESMMM--EHDTEIFKRIQILrdmGVG 693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 413 IAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFM 492
Cdd:PRK11359 694 LSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVI 773
|
250
....*....|....*....
gi 15832322 493 QGYWISRPLPLDDFVRWLK 511
Cdd:PRK11359 774 QGYFFSRPLPAEEIPGWMS 792
|
|
| PRK09776 |
PRK09776 |
putative diguanylate cyclase; Provisional |
268-507 |
4.06e-20 |
|
putative diguanylate cyclase; Provisional
Pssm-ID: 182070 [Multi-domain] Cd Length: 1092 Bit Score: 94.35 E-value: 4.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 268 IMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAEleKVLP 347
Cdd:PRK09776 846 WRMIKENQLMMLAHGVASPRIPEARNHWLISLRLWDPEGEIIDEGAFRPAAEDPALMHALDRRVIHEFFRQAAK--AVAS 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 348 VGVKFGINIAPDHLHSESFKANIQKLL--TSLPAHHfqIVLEITERDMLKEQEATQ-LFAWLHSVGVEIAIDDFGTGHSA 424
Cdd:PRK09776 924 KGLSIALPLSVAGLSSPTLLPFLLEQLenSPLPPRL--LHLEITETALLNHAESASrLVQKLRLAGCRVVLSDFGRGLSS 1001
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 425 LIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLD 504
Cdd:PRK09776 1002 FNYLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGPVELPLVLDTLSGIGVDLAYGYAIARPQPLD 1081
|
...
gi 15832322 505 DFV 507
Cdd:PRK09776 1082 LLL 1084
|
|
| YuxH |
COG3434 |
c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains [Signal transduction ... |
276-503 |
1.44e-13 |
|
c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains [Signal transduction mechanisms];
Pssm-ID: 442660 [Multi-domain] Cd Length: 407 Bit Score: 72.53 E-value: 1.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 276 QFYVAYQPVVDTQaLRVTGLEVLLRwrhPVAGEIPPDAFINFAESQkMIVpltQHLFELiardaaELEKVLPVGVKFgIN 355
Cdd:COG3434 3 DVFVARQPILDRD-QRVVGYELLFR---SGLENSAPDVDGDQATAR-VLL---NAFLEI------GLDRLLGGKLAF-IN 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 356 IAPDHLHSEsfkaniqkLLTSLPAHhfQIVLEITE--------RDMLKEqeatqlfawLHSVGVEIAIDDF--GTGHSAL 425
Cdd:COG3434 68 FTEELLLSD--------LPELLPPE--RVVLEILEdvepdeelLEALKE---------LKEKGYRIALDDFvlDPEWDPL 128
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15832322 426 IYLerftLDYLKIDrgfINAIGTETitspvLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPL 503
Cdd:COG3434 129 LPL----ADIIKID---VLALDLEE-----LAELVARLKRYGIKLLAEKVETREEFELCKELGFDLFQGYFFSKPEIL 194
|
|
| PRK11596 |
PRK11596 |
cyclic-di-GMP phosphodiesterase; Provisional |
281-506 |
8.60e-10 |
|
cyclic-di-GMP phosphodiesterase; Provisional
Pssm-ID: 183222 [Multi-domain] Cd Length: 255 Bit Score: 59.24 E-value: 8.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 281 YQPVVDTQAlRVTGLEVLLRWRHPVAGE--IPPDAFinFAE---SQKMIVPLTQhlFELIARDAAELEKVlpvGVKFGIN 355
Cdd:PRK11596 34 FQPIYRTSG-RLMAIELLTAVTHPSNPSqrLSPERY--FAEitvSHRLDVVKEQ--LDLLAQWADFFVRH---GLLASVN 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 356 IAPDHLHSESFKANIQKLLTSLPAHHFQIVLEIterDMLKEQEATQLFA----WLhsvgveiaiDDFGTG---HSALIYL 428
Cdd:PRK11596 106 IDGPTLIALRQQPAILRLIERLPWLRFELVEHI---RLPKDSPFASMCEfgplWL---------DDFGTGmanFSALSEV 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15832322 429 eRFtlDYLKIDRG-FINAIGTETITSpVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDF 506
Cdd:PRK11596 174 -RY--DYIKVARElFIMLRQSEEGRN-LFSQLLHLMNRYCRGVIVEGVETPEEWRDVQRSPAFAAQGYFLSRPAPFETL 248
|
|
| PRK11059 |
PRK11059 |
regulatory protein CsrD; Provisional |
259-504 |
3.30e-04 |
|
regulatory protein CsrD; Provisional
Pssm-ID: 236833 [Multi-domain] Cd Length: 640 Bit Score: 43.31 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 259 SVRMRPGREimTAIKREQFYVAYQPVVDTQAlRVTGLEVLLRWRHPVAGEIPPDAFInfaesqkmivPLTQhLFELIAR- 337
Cdd:PRK11059 401 SVRWRTLLE--QTLVRGGPRLYQQPAVTRDG-KVHHRELFCRIRDGQGELLSAELFM----------PMVQ-QLGLSEQy 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 338 DAAELEKVLP-----VGVKFGINIAPDHLHSESFKANIQKLLTSLPAHHFQ-IVLEITERDMLKEQEATQ-LFAWLHSVG 410
Cdd:PRK11059 467 DRQVIERVLPllrywPEENLSINLSVDSLLSRAFQRWLRDTLLQCPRSQRKrLIFELAEADVCQHISRLRpVLRMLRGLG 546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832322 411 VEIAIDDFG-----TGhsaliYLERFTLDYLKIDRGFINAIGTET-----ITSpvldavLTLA-KRLNMLTVAEGVETPE 479
Cdd:PRK11059 547 CRLAVDQAGltvvsTS-----YIKELNVELIKLHPSLVRNIHKRTenqlfVRS------LVGAcAGTETQVFATGVESRE 615
|
250 260
....*....|....*....|....*
gi 15832322 480 QARWLSERGVNFMQGYWISRPLPLD 504
Cdd:PRK11059 616 EWQTLQELGVSGGQGDFFAESQPLD 640
|
|
| |
