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Conserved domains on  [gi|38704114|ref|NP_311560|]
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membrane-anchored DUF883 family ribosome-binding protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

DUF883 domain-containing protein( domain architecture ID 10013434)

DUF883 domain-containing protein similar to Escherichia coli protein YgaM, a membrane-anchored ribosome-binding protein that inhibits growth in stationary phase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10132 PRK10132
hypothetical protein; Provisional
 1-108 6.30e-71

hypothetical protein; Provisional


:

Pssm-ID: 182259  Cd Length: 108  Bit Score: 206.64  E-value: 6.30e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704114    1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHGRTRVQQAARDAVGCADS 80
Cdd:PRK10132   1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADT 80

                         90       100
                 ....*....|....*....|....*...
gi 38704114   81 FVRERPWCSVGTAAAVGIFIGALLSMRK 108
Cdd:PRK10132  81 FVRERPWCSVGTAAAVGIFIGALLSLRK 108
 
Name Accession Description Interval E-value
PRK10132 PRK10132
hypothetical protein; Provisional
 1-108 6.30e-71

hypothetical protein; Provisional


Pssm-ID: 182259  Cd Length: 108  Bit Score: 206.64  E-value: 6.30e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704114    1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHGRTRVQQAARDAVGCADS 80
Cdd:PRK10132   1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADT 80

                         90       100
                 ....*....|....*....|....*...
gi 38704114   81 FVRERPWCSVGTAAAVGIFIGALLSMRK 108
Cdd:PRK10132  81 FVRERPWCSVGTAAAVGIFIGALLSLRK 108
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-107 4.16e-32

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 108.49  E-value: 4.16e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704114   1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHGR-TRVQQAARDAVGCAD 79
Cdd:COG4575   1 MANTKTTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAeDAAVERAREAADAAD 80

                        90       100
                ....*....|....*....|....*...
gi 38704114  80 SFVRERPWCSVGTAAAVGIFIGALLSMR 107
Cdd:COG4575  81 DYVHENPWQSVGIAAGVGLLLGLLLARR 108
DUF883_C pfam19029
DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed ...
 78-107 1.09e-09

DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed transmembrane helix found in DUF883 proteins. The helix contains a glycine zipper motif suggestive of dimerization.


Pssm-ID: 465949  Cd Length: 30  Bit Score: 49.47  E-value: 1.09e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 38704114    78 ADSFVRERPWCSVGTAAAVGIFIGALLSMR 107
Cdd:pfam19029   1 TDDYVHENPWQTIGIAAGVGLLLGLLLARR 30
 
Name Accession Description Interval E-value
PRK10132 PRK10132
hypothetical protein; Provisional
 1-108 6.30e-71

hypothetical protein; Provisional


Pssm-ID: 182259  Cd Length: 108  Bit Score: 206.64  E-value: 6.30e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704114    1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHGRTRVQQAARDAVGCADS 80
Cdd:PRK10132   1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADT 80

                         90       100
                 ....*....|....*....|....*...
gi 38704114   81 FVRERPWCSVGTAAAVGIFIGALLSMRK 108
Cdd:PRK10132  81 FVRERPWCSVGTAAAVGIFIGALLSLRK 108
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-107 4.16e-32

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 108.49  E-value: 4.16e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704114   1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHGR-TRVQQAARDAVGCAD 79
Cdd:COG4575   1 MANTKTTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAeDAAVERAREAADAAD 80

                        90       100
                ....*....|....*....|....*...
gi 38704114  80 SFVRERPWCSVGTAAAVGIFIGALLSMR 107
Cdd:COG4575  81 DYVHENPWQSVGIAAGVGLLLGLLLARR 108
PRK10404 PRK10404
stress response protein ElaB;
17-107 4.98e-14

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 62.17  E-value: 4.98e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704114   17 IQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARM-HGRTRVQQAARDAVGCADSFVRERPWCSVGTAAA 95
Cdd:PRK10404  10 IDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVsQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAA 89

                         90
                 ....*....|..
gi 38704114   96 VGIFIGALLSMR 107
Cdd:PRK10404  90 VGLVLGLLLARR 101
DUF883_C pfam19029
DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed ...
 78-107 1.09e-09

DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed transmembrane helix found in DUF883 proteins. The helix contains a glycine zipper motif suggestive of dimerization.


Pssm-ID: 465949  Cd Length: 30  Bit Score: 49.47  E-value: 1.09e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 38704114    78 ADSFVRERPWCSVGTAAAVGIFIGALLSMR 107
Cdd:pfam19029   1 TDDYVHENPWQTIGIAAGVGLLLGLLLARR 30
DUF883 pfam05957
DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of ...
 15-63 7.16e-09

DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of unknown function. The N-terminal domain found in this entry is related to pfam05532.


Pssm-ID: 461786  Cd Length: 53  Bit Score: 47.89  E-value: 7.16e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 38704114    15 QDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHG 63
Cdd:pfam05957   1 EELIDDLKSLLADLEELLKDAADEAGEEADALRERLESRLKRARERLSD 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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