|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 879.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVS 80
Cdd:PRK09796 1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 81 LLPGDMQPALPVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF 160
Cdd:PRK09796 81 LLPGDMQPAQPVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 161 LPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDR 240
Cdd:PRK09796 161 LPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 241 ITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTLTIIQT 320
Cdd:PRK09796 241 ITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 321 IAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICG 400
Cdd:PRK09796 321 IAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICG 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15832825 401 AVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAEARKHQ 472
Cdd:PRK09796 401 AVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAEARKHQ 472
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
5-485 |
5.08e-134 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 400.19 E-value: 5.08e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 5 YAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPG 84
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 85 DMQPALPVGKPKltlRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFFLPLM 164
Cdd:TIGR01995 81 DDQAEDDDSKGK---KSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVFYFLPIL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 165 VAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKaaqGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPA 244
Cdd:TIGR01995 158 LAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGS---GKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKVIPG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 245 VTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTLTIIQTIAET 324
Cdd:TIGR01995 235 ALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNIATQ 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 325 GKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQtALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAG 404
Cdd:TIGR01995 315 GFDPLILPASLAANFAQGGAALAVMLRTKNKKLKA-LAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGAIIG 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 405 MAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGF---EDIPVEEAAAEARKHQSAQPTVAKE 481
Cdd:TIGR01995 394 IGSVKAFTAFAPGLLGLPMFINPSDGANFISALIAIVISFVVSFVLTYFIGFkdqEDVVTQEAAALSKDESLYAPVAGEM 473
|
....
gi 15832825 482 VSLN 485
Cdd:TIGR01995 474 LPLN 477
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
102-484 |
4.51e-81 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 259.10 E-value: 4.51e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 102 IGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKG---SPTLTILNVIGDGAFFFLPLMVAASAAIKFKTNMS 178
Cdd:COG1263 7 PLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGsflSGTYQILNAAGDAVFYFLPLLFAIGAAKGFGGNPA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 179 LAIAIAGVLVHPSFIELMAKAaqGEHVEFALIPvTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLI 258
Cdd:COG1263 87 LAAVIGYLLVHPTLLNAYAVA--GGYISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPILTLLI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 259 AAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTLTIIQTIAETGKEGMvMPSEIGAN 338
Cdd:COG1263 164 MVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGL-FPILAAAM 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 339 LSLGGSSLAVAWKTK-NPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAGMAGLASHSMAAPG 417
Cdd:COG1263 243 FGQPGAALAVYLKAKpNKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFGVGG 322
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15832825 418 LFTSVQFFDPaNPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAEARKHQSAQPTVAKEVSL 484
Cdd:COG1263 323 LIDFPSILNP-GATNLLLYLIGLVIAFVYYFVFTFLIGREDEEEEEKLATKADAKKEEAEAAAAALG 388
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
8-82 |
2.34e-29 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 109.93 E-value: 2.34e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15832825 8 LARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL 82
Cdd:cd00212 3 LAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLL 77
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
113-396 |
2.40e-29 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 117.06 E-value: 2.40e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 113 TMSPLIPAIIGGSMVKLLA-----MILEMSGVLTKGSPTLTILNVIGDGAFFFLPLMVAASAAIKF-KTNMSLAIAIAGV 186
Cdd:pfam02378 3 GFMPPIPLLIAGGILLGLGnlpndTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGLIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 187 LVHPS---FIELMAKAAQG-EHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPL 262
Cdd:pfam02378 83 LLSFNlaaAISVALTAAGLsGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGFV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 263 AILLIGPIGIWIGSAIS----ALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTLTIIQTIA-----------ETGKE 327
Cdd:pfam02378 163 TLLVIGPVLGLIWPAIQgglnALGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIggsnpianqqaYGAGA 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15832825 328 GMVMPSEIGANLSLGGSSLAV---AWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPL-IASLISG 396
Cdd:pfam02378 243 AHILTGGFDVMFGGPGATLALyaaAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFfIPAILAG 315
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 879.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVS 80
Cdd:PRK09796 1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 81 LLPGDMQPALPVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF 160
Cdd:PRK09796 81 LLPGDMQPAQPVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 161 LPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDR 240
Cdd:PRK09796 161 LPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 241 ITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTLTIIQT 320
Cdd:PRK09796 241 ITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 321 IAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICG 400
Cdd:PRK09796 321 IAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICG 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15832825 401 AVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAEARKHQ 472
Cdd:PRK09796 401 AVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAEARKHQ 472
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
5-485 |
5.08e-134 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 400.19 E-value: 5.08e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 5 YAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPG 84
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 85 DMQPALPVGKPKltlRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFFLPLM 164
Cdd:TIGR01995 81 DDQAEDDDSKGK---KSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVFYFLPIL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 165 VAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKaaqGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPA 244
Cdd:TIGR01995 158 LAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGS---GKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKVIPG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 245 VTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTLTIIQTIAET 324
Cdd:TIGR01995 235 ALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNIATQ 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 325 GKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQtALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAG 404
Cdd:TIGR01995 315 GFDPLILPASLAANFAQGGAALAVMLRTKNKKLKA-LAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGAIIG 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 405 MAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGF---EDIPVEEAAAEARKHQSAQPTVAKE 481
Cdd:TIGR01995 394 IGSVKAFTAFAPGLLGLPMFINPSDGANFISALIAIVISFVVSFVLTYFIGFkdqEDVVTQEAAALSKDESLYAPVAGEM 473
|
....
gi 15832825 482 VSLN 485
Cdd:TIGR01995 474 LPLN 477
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
154-442 |
4.48e-81 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 253.39 E-value: 4.48e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 154 GDGAFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHvEFALIPVTAVKYTYTVIPALVMTWCLSY 233
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVG-NFFGFEIAKVGYTGVVGPIIVGAIALAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 234 IERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGS-AISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRV 312
Cdd:TIGR00852 80 HERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPvGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLHHI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 313 FTLTIIQTIAETGKEG--MVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLI 390
Cdd:TIGR00852 160 FYAIFIQLIAGGTVIGggQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGL-GITEPAMYGVALRERRPFV 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 15832825 391 ASLISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPAnPMSIVWVFAVMAL 442
Cdd:TIGR00852 239 AGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVL-AGSIFTVAIGMGI 289
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
102-484 |
4.51e-81 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 259.10 E-value: 4.51e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 102 IGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKG---SPTLTILNVIGDGAFFFLPLMVAASAAIKFKTNMS 178
Cdd:COG1263 7 PLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGsflSGTYQILNAAGDAVFYFLPLLFAIGAAKGFGGNPA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 179 LAIAIAGVLVHPSFIELMAKAaqGEHVEFALIPvTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLI 258
Cdd:COG1263 87 LAAVIGYLLVHPTLLNAYAVA--GGYISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPILTLLI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 259 AAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTLTIIQTIAETGKEGMvMPSEIGAN 338
Cdd:COG1263 164 MVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGL-FPILAAAM 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 339 LSLGGSSLAVAWKTK-NPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAGMAGLASHSMAAPG 417
Cdd:COG1263 243 FGQPGAALAVYLKAKpNKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFGVGG 322
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15832825 418 LFTSVQFFDPaNPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAEARKHQSAQPTVAKEVSL 484
Cdd:COG1263 323 LIDFPSILNP-GATNLLLYLIGLVIAFVYYFVFTFLIGREDEEEEEKLATKADAKKEEAEAAAAALG 388
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
4-485 |
1.47e-76 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 251.94 E-value: 1.47e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 4 NYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL- 82
Cdd:PRK09824 2 EYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAVNSVAg 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 83 PGDMQPALPVGKPKLTLRrigAGILDALIGTMSPLIPAIIGGSMVK-LLAMILeMSGVLTKGSPTLTILNVIGDGAFFFL 161
Cdd:PRK09824 82 LGEKAQQAPENDKKGNLL---NRFIDVISGIFTPLIGVMAATGILKgMLALAL-TFGWTTEQSGTYKILFAASDALFFFF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 162 PLMVAASAAIKFKTNMSLAIAIAGVLVHPSFI---ELMAKA-AQGEHveFALIPVTAVKYTYTVIPALVMTWCLSYIERW 237
Cdd:PRK09824 158 PIILGYTAGKKFGGNPFTAMVIGGALVHPLMIaafEAGQKAdALGLD--FLGIPVTLLNYSSSVIPIIFSAWLCSILERR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 238 VDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTLTI 317
Cdd:PRK09824 236 LNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLVPLM 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 318 IQTIAETGKEGMvMPSEIGANLSLGGSSLAVAWKTKNPELRqTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGF 397
Cdd:PRK09824 316 INNLTVLGHDTM-LPLLMPAVMAQVGAALGVFLCTRDAQKK-VVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCISGA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 398 ICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAV-MALAVVLSFILTLLLGFEDIPVEEAAAEARKHQSAQP 476
Cdd:PRK09824 394 LGAAIIGYAQTKVYSFGLPSIFTFMQTIPPTGIDFTVWASVIgTVIAIGCAFVGTVMFGFPTAKRQPAQVAPQEKTPEVI 473
|
....*....
gi 15832825 477 TVAKEVSLN 485
Cdd:PRK09824 474 TPPEQGGIC 482
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
4-454 |
8.35e-76 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 245.29 E-value: 8.35e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 4 NYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIG----NTVSQAFQEVV 79
Cdd:TIGR01996 1 NYQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGtgvvNKVYDEIVKLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 80 SLLPGDMQPALPVGKPKLT-LRRIGAGILDALIgtmsPLIPAII-GGSMVKLLAMI-----LEMSGVLTK--GSPTLTIL 150
Cdd:TIGR01996 81 GLSESSTSEQKAEAAKKMNpFQRFARTLSDIFV----PIIPAIVaTGLLMGLNGMLtafglFGLSGVSVApiPEGLAEMI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 151 NVIGDGAFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSF---IELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVM 227
Cdd:TIGR01996 157 NVFTSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLpnaYGVAAGTATGKAWNIFGLHIPVVGYQGTVLPVLVA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 228 TWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMT 307
Cdd:TIGR01996 237 VWILAKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVIT 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 308 GMHRVFTLTIIQTIAETGKEG-MVMPSEIGANLSLGGSSLAVAWKTKNPELRQTaLAAAASAIMAGISEPALYGVAIRLK 386
Cdd:TIGR01996 317 GIHHSFHAIETQLLANTKTGGnFLFPIASMANVAQGGAALAVFFKTKDKKLKGL-AIPSGLSALLGITEPAIFGVNLRYR 395
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 387 RPLIASLISGFICGAVAGMAGLASHSMAAPGL--FTSVQffdpANPMSIVWVFAVMALAVVLSFILTLLL 454
Cdd:TIGR01996 396 KPFIAALIGGAIGGAYVVLFHVAATAYGLTGIpgFLSIL----PSGINLLHYIVGMLIAFAVAFIATLLL 461
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
9-455 |
1.15e-59 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 203.04 E-value: 1.15e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 9 ARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNT----VSQAFQEVVSLLPG 84
Cdd:TIGR01992 4 AKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGPGtvdkVYAALIAETGIAEV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 85 DMQPALPVGKPKLT-LRRIGAGILDALIgtmsPLIPAIIGGSMVKLLAMILEMSGVLTKG------SPTL----TILNVI 153
Cdd:TIGR01992 84 SKEEVKKAAAKNMNpLQRLIKLLADIFI----PILPAIITAGLLMGINNLLGAKGMSFGGqtlvevYPQWagiyNFINLI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 154 GDGAFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIE--LMAKAAQGEHV----EFALIPVTAVKYTYTVIPALVM 227
Cdd:TIGR01992 160 AETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNayLYGQALAEGNIpvwdLFGFFEIQKVGYQGQVLPALLA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 228 TWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMT 307
Cdd:TIGR01992 240 GYVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYAPLVIT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 308 GMHRVFTLTIIQTIAETGKEGmVMPSEIGANLSLGGSSLAVAWKTKNpELRQTALAAAASAIMAGISEPALYGVAIRLKR 387
Cdd:TIGR01992 320 GLHHMFLAVDLQLIGSLGGTF-LWPMIALSNIAQGSAALGIIFMSRN-EKEKGLSLTSAISAYLGVTEPAMFGVNLKYKF 397
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 388 PLIASLISGFICGAVAGMAGLASHSMAAPGL--FTSVQffdpanPMSIVWVFAVMALAVVLSFILTLLLG 455
Cdd:TIGR01992 398 PFIAAMIGSGLAGLLSGLNGVLANSIGVGGLpgFISIQ------PQYWPVFAIGMAIAIVVPFVLTIFFS 461
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
13-454 |
4.38e-40 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 150.61 E-value: 4.38e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 13 IAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEvvsLLPGDMQPALPV 92
Cdd:PRK11007 14 IELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKA---LIATTGQAEVDK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 93 GKPKLTLRRiGAGILDALIGTMS----PLIPAII-GGSMVKLLAMI--LEMSG--VLTKGSPTLT----ILNVIGDGAFF 159
Cdd:PRK11007 91 EQAKKAARQ-NMKWHERLISHFAeiffPLLPALIsGGLILGFRNVIgdIPMSDgqTLAQMYPFWQtiydFLWLIGEAIFF 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 160 FLPLMVAASAAIKFKTNMSLAIAIAGVLVHPsfiELMAKAAQGEHV----EFALIPVTAVKYTYTVIPALVMTWCLSYIE 235
Cdd:PRK11007 170 YLPVGICWSAVKKMGGTPILGIVLGVTLVSP---QLMNAYLLGQQLpevwDFGLFSIEKVGYQAQVIPALLAGLALGFIE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 236 RWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALV-YTIHGYLGWLSVAIMGALWPLLVMTGMHRVfT 314
Cdd:PRK11007 247 TRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVkALMTGSFAPIGAALFGFLYAPLVITGVHQT-T 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 315 LTI-IQTIAETGKEGmVMPSEIGANLSLGGSSLAVAWKTKNPELRQtALAAAASAIMAGISEPALYGVAIRLKRPLIASL 393
Cdd:PRK11007 326 LAIdLQMIQSMGGTP-VWPLIALSNIAQASAVVGIIIISRKHNERE-ISVPAAISAYLGVTEPAMYGINLKYRFPMLCAM 403
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15832825 394 ISGFICGAVAGMAGLASHSMAAPGL--FTSVQffdPAnpmsiVW-VFAV-MALAVVLSFILTLLL 454
Cdd:PRK11007 404 IGSALAGLICGLNGVMANGIGVGGLpgILSIQ---PQ-----YWqVYALaMLVAIVVPIVLTSFI 460
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
1-459 |
2.53e-31 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 125.95 E-value: 2.53e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVS 80
Cdd:PRK09586 1 MAKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGPGKAQRAAKAMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 81 LLPGDMQPALPV-------GKPKLTLRRIGA--GILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTI-- 149
Cdd:PRK09586 81 ELLGEAAAPVQDlaeiaaqNKRQLKAKQTSGvqQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADAQGTLPda 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 150 ---LNVIGDGAFFFLPLMVAASAAIKF-KTNMSLAIaIAGVLVHPSFIELMAKAAQGEHVEFALipvtAVKYTYTVIPAL 225
Cdd:PRK09586 161 lnyMKVFSKGLFTFLSILIGYNAQQAFgGTGVNGAI-IASLFLLGYNPAATTGYYAGFHDFFGL----PIDPRGNIIGVL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 226 VMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGylGWLSVAIMGALWPLLV 305
Cdd:PRK09586 236 IAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHLNS--NPFGCAVLAGLFLIAV 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 306 MTGMHRVFTLTIIQTIAETGKEGMvMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRL 385
Cdd:PRK09586 314 VFGVHQGFIPVYFALMDSQGFNSL-FPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLPR 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 386 KRPLIASLI----SGFICGAVAGMA---GLAS----HSMAAPGLFTSVQFFDPAnpmsiVWVFAV-MALAVVLSFILTLL 453
Cdd:PRK09586 393 MKPFVTACLggaaGGFFIGLIAWLGlpvGLNSvfgpSGLVALPLMTSAQGILPG-----MAVYAGgLLVAYVCGFIFTTL 467
|
....*.
gi 15832825 454 LGFEDI 459
Cdd:PRK09586 468 FGCKNV 473
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
8-82 |
2.34e-29 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 109.93 E-value: 2.34e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15832825 8 LARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL 82
Cdd:cd00212 3 LAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLL 77
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
113-396 |
2.40e-29 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 117.06 E-value: 2.40e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 113 TMSPLIPAIIGGSMVKLLA-----MILEMSGVLTKGSPTLTILNVIGDGAFFFLPLMVAASAAIKF-KTNMSLAIAIAGV 186
Cdd:pfam02378 3 GFMPPIPLLIAGGILLGLGnlpndTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGLIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 187 LVHPS---FIELMAKAAQG-EHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPL 262
Cdd:pfam02378 83 LLSFNlaaAISVALTAAGLsGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGFV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832825 263 AILLIGPIGIWIGSAIS----ALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTLTIIQTIA-----------ETGKE 327
Cdd:pfam02378 163 TLLVIGPVLGLIWPAIQgglnALGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIggsnpianqqaYGAGA 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15832825 328 GMVMPSEIGANLSLGGSSLAV---AWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPL-IASLISG 396
Cdd:pfam02378 243 AHILTGGFDVMFGGPGATLALyaaAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFfIPAILAG 315
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
6-82 |
6.70e-28 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 105.97 E-value: 6.70e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15832825 6 AALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIpGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL 82
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
10-41 |
3.00e-13 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 63.54 E-value: 3.00e-13
10 20 30
....*....|....*....|....*....|..
gi 15832825 10 RSVIAALGGVDNISAVTHCMTRLRFVIKDDAL 41
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
5-82 |
4.60e-12 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 67.36 E-value: 4.60e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15832825 5 YAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIG-NTVSQAFQEVVSLL 82
Cdd:PRK14905 274 FSEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGaGIVEKIHEEMKALL 352
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
30-81 |
4.99e-12 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 61.61 E-value: 4.99e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 15832825 30 TRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGN-TVSQAFQEVVSL 81
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTgNVNKVDACITRL 53
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
9-82 |
1.22e-08 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 54.33 E-value: 1.22e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15832825 9 ARSVIAALGGVDNISAVTHCMTRLRFVIKD-DALIDSPTLKTIpGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL 82
Cdd:PRK09702 73 AAGILQALGGVGNISSINNCATRLRIALHDmSQTLDDEVFKKL-GAHGVFRSGDAIQVIIGLHVSQLREQLDSLI 146
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
9-83 |
4.60e-08 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 55.51 E-value: 4.60e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15832825 9 ARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIpGVLGVVRSDNQ-CQVIIGNTVSQAFQEVVSLLP 83
Cdd:PRK10110 452 VPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDN-RAIGVVQLNQHnLQVVIGPQVQSVKDEMAGLMH 526
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
13-68 |
1.88e-07 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 48.89 E-value: 1.88e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 15832825 13 IAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIpGVLGVVRSDNQCQVIIG 68
Cdd:TIGR00826 34 IQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKL-GAHGVNPLQRAVQVISG 88
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
7-68 |
1.54e-06 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 50.64 E-value: 1.54e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15832825 7 ALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIpGVLGVVRSDNQC-QVIIG 68
Cdd:PRK10255 391 QLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRL-GASGVVKLNKQTiQVIVG 452
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
2-68 |
9.90e-06 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 47.79 E-value: 9.90e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15832825 2 AKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIpGVLGVVRSDNQCQVIIG 68
Cdd:PRK11089 395 ATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKL-GAAGVVVAGSGVQAIFG 460
|
|
| |
