NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1134749577|ref|NP_311696|]
View 

lipoprotein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

YgdI/YgdR family lipoprotein( domain architecture ID 3632)

YgdI/YgdR family lipoprotein is a DUF903 domain-containing protein; similar to Escherichia coli lipoproteins, YgdI and YgdR

CATH:  2.30.30.100
Gene Ontology:  GO:0005886
SCOP:  4001696

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 2-73 2.05e-37

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


:

Pssm-ID: 468001  Cd Length: 71  Bit Score: 119.14  E-value: 2.05e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1134749577  2 KKTAAIISACMLTFALSACSgSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVEL 73
Cdd:NF033216   1 KKLLAALLAALALLALAGCS-SPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKEL 71
 
Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 2-73 2.05e-37

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


Pssm-ID: 468001  Cd Length: 71  Bit Score: 119.14  E-value: 2.05e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1134749577  2 KKTAAIISACMLTFALSACSgSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVEL 73
Cdd:NF033216   1 KKLLAALLAALALLALAGCS-SPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKEL 71
DUF903 pfam06004
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 24-72 1.89e-23

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


Pssm-ID: 428717  Cd Length: 49  Bit Score: 83.36  E-value: 1.89e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1134749577 24 NYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVE 72
Cdd:pfam06004  1 PYVITTKDGRTIVTDGKPKYDKDTGMYEYEDEEGKEVQINKDDVKQIKE 49
NlpA COG1464
ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion ...
 1-36 4.99e-03

ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism];


Pssm-ID: 441073 [Multi-domain]  Cd Length: 270  Bit Score: 33.55  E-value: 4.99e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1134749577   1 MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIV 36
Cdd:COG1464     1 MKKLLALLLALALALALAACGSSSAAAAAADKKTIK 36
 
Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 2-73 2.05e-37

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


Pssm-ID: 468001  Cd Length: 71  Bit Score: 119.14  E-value: 2.05e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1134749577  2 KKTAAIISACMLTFALSACSgSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVEL 73
Cdd:NF033216   1 KKLLAALLAALALLALAGCS-SPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKEL 71
DUF903 pfam06004
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 24-72 1.89e-23

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


Pssm-ID: 428717  Cd Length: 49  Bit Score: 83.36  E-value: 1.89e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1134749577 24 NYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVE 72
Cdd:pfam06004  1 PYVITTKDGRTIVTDGKPKYDKDTGMYEYEDEEGKEVQINKDDVKQIKE 49
NlpA COG1464
ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion ...
 1-36 4.99e-03

ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism];


Pssm-ID: 441073 [Multi-domain]  Cd Length: 270  Bit Score: 33.55  E-value: 4.99e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1134749577   1 MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIV 36
Cdd:COG1464     1 MKKLLALLLALALALALAACGSSSAAAAAADKKTIK 36
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 1-40 7.41e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 32.93  E-value: 7.41e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1134749577   1 MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGK 40
Cdd:COG4105     1 MKKLLKLLLLLLLALLLAGCSSFKKALKSWDAEELYEEAK 40
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-25 7.64e-03

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 32.70  E-value: 7.64e-03
                          10        20
                  ....*....|....*....|....*
gi 1134749577   1 MKKTAAIISACMLTFALSACSGSNY 25
Cdd:COG2913     1 MRKLRLLLLALLLALLLAGCSSFVY 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH