|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15404 |
PRK15404 |
high-affinity branched-chain amino acid ABC transporter substrate-binding protein; |
1-367 |
0e+00 |
|
high-affinity branched-chain amino acid ABC transporter substrate-binding protein;
Pssm-ID: 237959 [Multi-domain] Cd Length: 369 Bit Score: 707.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 1 MNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQ 80
Cdd:PRK15404 1 MKSKGKTLLAGCIALALSHAALADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYDDACDPKQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 81 AVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVK 160
Cdd:PRK15404 81 AVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYILEKVK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 161 PQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAG 240
Cdd:PRK15404 161 PKRIAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQAREAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 241 LKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQ--SD 318
Cdd:PRK15404 241 LKTQFMGPEGVGNKSLSNIAGPASEGMLVTLPKRYDQDPANKAIVDAFKAKKQDPSGPFVWTTYAAVQSLAAGINRagSD 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1447699773 319 DPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK 367
Cdd:PRK15404 321 DPAKVAKYLKANTFDTVIGPLSWDEKGDLKGFEFGVFEWHADGTKTAAK 369
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
27-357 |
7.26e-133 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 382.64 E-value: 7.26e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQ 106
Cdd:cd06342 1 KIGVAGPLTGPNAALGQDIRNGAELAVDEINAKGGGLGFKIELVAQDDACDPAQAVAAAQKLVADGVVAVIGHYNSGAAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 107 PASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGLK 186
Cdd:cd06342 81 AAAPIYAEAGIPMISPSATNPKLTEQGYKNFFRVVGTDDQQGPAAADYAAKTLKAKRVAVIHDGTAYGKGLADAFKKALK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 187 KGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEG 266
Cdd:cd06342 161 ALGGTVVGREGITPGTTDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGLKAPFMGGDGIVSPDFIKAAGDAAEG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 267 LLVTKPKN-YDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEIAKYLKANSVDTVMGPLTWDE 343
Cdd:cd06342 241 VYATTPGApPEKLPAAKAFLKAYKAKFGEPPGAYAAYAYDAAQVLLAAIEKagSTDRAAVAAALRATDFDGVTGTISFDA 320
|
330
....*....|....
gi 1447699773 344 KGDLKGFEFGVFDW 357
Cdd:cd06342 321 KGDLTGPAFTVYQV 334
|
|
| PBP1_ABC_transporter_GPCR_C-like |
cd04509 |
Family C of G-protein coupled receptors and their close homologs, the type 1 ... |
27-309 |
2.16e-122 |
|
Family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems; This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, pheromone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus (included in this model) followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type 2 periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are also included in this family.
Pssm-ID: 380490 Cd Length: 306 Bit Score: 355.46 E-value: 2.16e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSG----------PVAQYGDQEFTGAEQAVADINAKG-GIKGNKLQIVKYDDACDPKQAVAVANKVVND---- 91
Cdd:cd04509 1 KVGVLFAVHGkgpsgvpcgdIVAQYGIQRFEAMEQALDDINADPnLLPNNTLGIVIYDDCCDPKQALEQSNKFVNDliqk 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 92 -------------------GIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTA-RGYQLILRTTGLDSDQGPTA 151
Cdd:cd04509 81 dtsdvrctngeppvfvkpeGIKGVIGHLCSSVTIPVSNILELFGIPQITYAATAPELSDdRGYQLFLRVVPLDSDQAPAM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 152 AKYILEKVkPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGE--KDFSTLVARLKKEN-IDFVYYGGYHPE 228
Cdd:cd04509 161 ADIVKEKV-WQYVSIVHDEGQYGEGGARAFQDGLKKGGLCIAFSDGITAGEktKDFDRLVARLKKENnIRFVVYFGYHPE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 229 MGQILRQARAAGL--KTQFMGPEGVANVSLS-NIAGESAEGLLVTKPKnydqvpankpivdaikakkqdpsgafVWTTYA 305
Cdd:cd04509 240 MGQILRAARRAGLvgKFQFMGSDGWANVSLSlNIAEESAEGLITIKPK--------------------------VWFVIA 293
|
....
gi 1447699773 306 ALQS 309
Cdd:cd04509 294 ALYA 297
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
23-361 |
1.11e-80 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 249.08 E-value: 1.11e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 23 AEDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANK-VVNDGIKYVIGHLC 101
Cdd:COG0683 1 ADPIKIGVLLPLTGPYAALGQPIKNGAELAVEEINAAGGVLGRKIELVVEDDASDPDTAVAAARKlIDQDKVDAIVGPLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 102 SSSTQPASDIYEDEGILMITPAATAPELT-ARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARA 180
Cdd:COG0683 81 SGVALAVAPVAEEAGVPLISPSATAPALTgPECSPYVFRTAPSDAQQAEALADYLAKKLGAKKVALLYDDYAYGQGLAAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 181 VQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFmgpegvanvslsnia 260
Cdd:COG0683 161 FKAALKAAGGEVVGEEYYPPGTTDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAGLKGPL--------------- 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 261 gesaegllvtkpknydqvpaNKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEIAKYLKANSVDTVMGP 338
Cdd:COG0683 226 --------------------NKAFVKAYKAKYGREPSSYAAAGYDAALLLAEAIEKagSTDREAVRDALEGLKFDGVTGP 285
|
330 340
....*....|....*....|...
gi 1447699773 339 LTWDEKGDLKGFeFGVFDWHANG 361
Cdd:COG0683 286 ITFDPDGQGVQP-VYIVQVKADG 307
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
27-310 |
3.68e-75 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 234.53 E-value: 3.68e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSST 105
Cdd:cd06268 1 KIGVVVPLTGPYADYGEEILRGVALAVEEINAAGGINGRKLELVIADDQGDPETAVAVARKLVdDDKVLAVVGHYSSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGL 185
Cdd:cd06268 81 LAAAPIYQEAGIPLISPGSTAPELTEGGGPYVFRTVPSDAMQAAALADYLAKKLKGKKVAILYDDYDYGKSLADAFKKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 186 KKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAE 265
Cdd:cd06268 161 KALGGEIVAEEDFPLGTTDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELGLKLPILGGDGLYSPELLKLGGEAAE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1447699773 266 GLLVTKPKNYD-QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSL 310
Cdd:cd06268 241 GVVVAVPWHPDsPDPPKQAFVKAYKKKYGGPPSWRAATAYDATQAL 286
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-346 |
1.28e-70 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 223.99 E-value: 1.28e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSST 105
Cdd:cd06349 1 KIGVSGPLTGDNAEYGQQFKNGVELAVDEINAAGGVNGRKLELVVYDDQGDPKEAVNIAQKFVsDDKVVAVIGDFSSSCS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTaRGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGL 185
Cdd:cd06349 81 MAAAPIYEEAGLVQISPTASHPDFT-KGGDYVFRNSPTQAVEAPFLADYAVKKLGAKKIAIIYLNTDWGVSAADAFKKAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 186 KKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAE 265
Cdd:cd06349 160 KALGGEIVATEAYLPGTKDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLGWDVQIFGSSSLYSPEFIELAGDAAE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 266 GLLVTKPKN-YDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQS-DDPAEIAKYLKANSVDTVM-GPLTWD 342
Cdd:cd06349 240 GVYLSSPFFpESPDPEVKEFVKAYKAKYGEDPDDFAARAYDAVNILAEAIEKAgTDREAIRDALANIKDFSGLtGTITFD 319
|
....
gi 1447699773 343 EKGD 346
Cdd:cd06349 320 ENGD 323
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-346 |
1.60e-70 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 223.57 E-value: 1.60e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd06347 1 KIGVIGPLTGEAAAYGQPALNGAELAVDEINAAGGILGKKIELIVYDNKSDPTEAANAAQKLIDeDKVVAIIGPVTSSIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTA-RGYqlILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDK-QQYGEGLARAVQD 183
Cdd:cd06347 81 LAAAPIAQKAKIPMITPSATNPLVTKgGDY--IFRACFTDPFQGAALAKFAYEELGAKKAAVLYDVsSDYSKGLAKAFKE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 184 GLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGES 263
Cdd:cd06347 159 AFEKLGGEIVAEETYTSGDTDFSAQLTKIKAANPDVIFLPGYYEEAALIIKQARELGITAPILGGDGWDSPELLELGGDA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 264 AEGLLVTkpKNY---DQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEIAKYLKAN-SVDTVMG 337
Cdd:cd06347 239 VEGVYFT--THFspdDPSPEVQEFVKAYKAKYGEPPNAFAALGYDAVMLLADAIKRagSTDPEAIRDALAKTkDFEGVTG 316
|
....*....
gi 1447699773 338 PLTWDEKGD 346
Cdd:cd06347 317 TITFDPNGN 325
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-346 |
8.00e-67 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 214.39 E-value: 8.00e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd19980 1 KIGVIAPLSGPVAALGQQVLNGAKLAVEEINAKGGVLGRKLELVVEDDKCPPAEGVAAAKKLITdDKVPAIIGAWCSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGL 185
Cdd:cd19980 81 LAVMPVAERAKVPLVVEISSAPKITEGGNPYVFRLNPTNSMLAKAFAKYLADKGKPKKVAFLAENDDYGRGAAEAFKKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 186 KKGNANVV---FFDgitAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGE 262
Cdd:cd19980 161 KAKGVKVVateYFD---QGQTDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGLKQQLVGTGGTTSPDLIKLAGD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 263 SAEGLLVTKPKNYD-QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQ---SDDPAEIAKYLKANSVDTVMGP 338
Cdd:cd19980 238 AAEGVYGASIYAPTaDNPANKAFVAAYKKKYGEPPDKFAALGYDAVMVIAEAIKKagsTDPEKIRAAALKKVDYKGPGGT 317
|
....*...
gi 1447699773 339 LTWDEKGD 346
Cdd:cd19980 318 IKFDEKGQ 325
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-304 |
7.32e-64 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 205.15 E-value: 7.32e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANK-VVNDGIKYVIGHLCSSST 105
Cdd:cd19984 1 KIGVILPLTGDAASYGEDMKNGIELAVEEINAAGGINGKKIELIYEDSKCDPKKAVSAANKlINVDKVKAIIGGVCSSET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARG-YqlILRTTGLDSDQGPTAAKYILEKVKpQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd19984 81 LAIAPIAEQNKVVLISPGASSPEITKAGdY--IFRNYPSDAYQGKVLAEFAYNKLY-KKVAILYENNDYGVGLKDVFKKE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESA 264
Cdd:cd19984 158 FEELGGKIVASESFEQGETDFRTQLTKIKAANPDAIFLPGYPKEGGLILKQAKELGIKAPILGSDGFEDPELLEIAGEAA 237
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1447699773 265 EGLLVTKPK-NYDQVPANKPIVDAIKAKKQDPSGAFVWTTY 304
Cdd:cd19984 238 EGVIFTYPAfDDSSEKKQKFFFYRYKEKYGKEPDIYAALAY 278
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
30-349 |
1.32e-62 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 203.23 E-value: 1.32e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 30 VVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSSTQPA 108
Cdd:cd06344 2 IVIGVAWPFAPDGDLFLEGVELAVEEINAAGGVLGRKIRLVEYDDEASVDKGLAIAQRFAdNPDVVAVIGHRSSYVAIPA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 109 SDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILE-KVKpqRIAIVHDKQQYGEGLARAVQDGLKK 187
Cdd:cd06344 82 SIIYERAGLLMLSPGATAPKLTQHGFKYIFRNIPSDEDIARQLARYAARqGYK--RIVIYYDDDSYGKGLANAFEEEARE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 188 GNANVVFFDGITAGEKDFSTLVARLKK-ENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEG 266
Cdd:cd06344 160 LGITIVDRRSYSSDEEDFRRLLSKWKAlDFFDAIFLAGSMPEGAEFIKQARELGIKVPIIGGDGLDSPELIEIAGKAAEG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 267 LLVT---KPKnyDQVPANKPIVDAIKAK-KQDPSgafVWTT--YAALQSLQAGLN--QSDDPAEIAKYLKA-NSVDTVMG 337
Cdd:cd06344 240 VVVAtvfDPD--DPRPEVRAFVEAFRKKyGREPD---VWAAqgYDAVKLLAEAIEkaGSTVPAKIASALRFlENWEGVTG 314
|
330
....*....|..
gi 1447699773 338 PLTWDEKGDLKG 349
Cdd:cd06344 315 TYSFDANGDVVG 326
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-318 |
8.04e-59 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 192.49 E-value: 8.04e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd19988 1 KIGVFGPLSGDAAPYGQAMLQGAELAVEEINAAGGILGIPIELVVEDDEGLPAASVSAAKKLIYqDKVWAIIGSINSSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGL 185
Cdd:cd19988 81 LAAIRVALKAGVPQINPGSSAPTITESGNPWVFRCTPDDRQQAYALVDYAFEKLKVTKIAVLYVNDDYGRGGIDAFKDAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 186 KKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAE 265
Cdd:cd19988 161 KKYGIEVVVEESYNRGDKDFSPQLEKIKDSGAQAIVMWGQYTEGALIAKQARELGLKQPLFGSDGLVTPKFIELAGDAAE 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1447699773 266 GLLVTKPKNYD-QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLqAGLNQSD 318
Cdd:cd19988 241 GAIATTPFLPDsDDPKVSAFVEKYKKRYGEEPDVFAAQAYDAMNIL-AGDNVGP 293
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-346 |
2.60e-53 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 178.53 E-value: 2.60e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd06346 1 KIGALLPLTGPLASLGPPMLAAAELAVEEINAAGGVLGKKVELVVEDSQTDPTAAVDAARKLVDvEGVPAIVGAASSGVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTA-RGYQLILRTTGLDSDQGPTAAKYILEK-VKpqRIAIVHDKQQYGEGLARAVQD 183
Cdd:cd06346 81 LAVASVAVPNGVVQISPSSTSPALTTlEDKGYVFRTAPSDALQGVVLAQLAAERgFK--KVAVIYVNNDYGQGLADAFKK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 184 GLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGL-KTQFMGPEGVANVSL-SNIAG 261
Cdd:cd06346 159 AFEALGGTVTASVPYEPGQTSYRAELAQAAAGGPDALVLIGYPEDGATILREALELGLdFTPWIGTDGLKSDDLvEAAGA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 262 ESAEGLLVTKPKNYDQvPANKPIVDAIKAKKQDPSGAFVWTTYAALqslqaglnqsddpaeiakYLKANSVDTVMGPLTW 341
Cdd:cd06346 239 EALEGMLGTAPGSPGS-PAYEAFAAAYKAEYGDDPGPFAANAYDAV------------------MLLALAYEGASGPIDF 299
|
....*
gi 1447699773 342 DEKGD 346
Cdd:cd06346 300 DENGD 304
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-327 |
2.11e-52 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 177.42 E-value: 2.11e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSST 105
Cdd:cd06335 1 KIGVIGPLTGPSAELGESARRGVELAVEEINAAGGILGRKIELVERDDEANPTKAVQNAQELIdKEKVVAIIGPTNSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELT---ARGYQLILRTTGLDSDQGPTAAKYILEKvKPQRIAIVHDKQQYGEGLARAVQ 182
Cdd:cd06335 81 LATIPILQEAKIPLIIPVATGTAITkppAKPRNYIFRVAASDTLQADFLVDYAVKK-GFKKIAILHDTTGYGQGGLKDVE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 183 DGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGE 262
Cdd:cd06335 160 AALKKRGITPVATESFKIGDTDMTPQLLKAKDAGADVILVYGLGPDLAQILKAMEKLGWKVPLVGSWGLSMPNFIELAGP 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1447699773 263 SAEGLLVTKPKNYDQV-PANKPIVDAIKAK---KQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEIAKYL 327
Cdd:cd06335 240 LAEGTIMTQTFIEDYLtPRAKKFIDAYKKKygtDRIPSPVSAAQGYDAVYLLAAAIKQagSTDGKKIRAAL 310
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
30-357 |
2.61e-52 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 177.00 E-value: 2.61e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 30 VVGA---MSGPVAQYGDQEFTGAEQAVADINAKGGIKGN----KLQIVKYDDACDPKQAVAVANK-VVNDGIKYVIGHLC 101
Cdd:cd06338 1 KIGAslsLTGPFAGEGKAQKRGYELWVEDVNAAGGVKGGgkkrPVELVYYDDQSDPATAVRLYEKlITEDKVDLLLGPYS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 102 SSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKV-KPQRIAIVHDKQQYGEGLARA 180
Cdd:cd06338 81 SGLTLAAAPVAEKYGIPMIAGGAASDSIFERGYKYVFGVLPPASDYAKGLLDLLAELGpKPKTVAIVYEDDPFGKEVAEG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 181 VQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGL--KTQFMGPeGVANVSLSN 258
Cdd:cd06338 161 AREAAKKAGLEVVYDESYPPGTTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELGYnpKAFFLTV-GPAFPAFRE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 259 IAGESAEGLLV----TKPKNYDQVPANKPIVDAIKAK-KQDPSgafvWTT---YAALQSLQAGLNQ--SDDPAEIAKYLK 328
Cdd:cd06338 240 ALGKDAEGVLGpsqwEPSLPYKVFPGAKEFVKAYKEKfGEEPS----YHAaaaYAAGQVLQQAIEKagSLDPEKVRDALA 315
|
330 340
....*....|....*....|....*....
gi 1447699773 329 ANSVDTVMGPLTWDEKGDLKGFEFGVFDW 357
Cdd:cd06338 316 SLDFDTVYGPIKFDETGLQIGKPMVVVQW 344
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-276 |
5.86e-51 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 172.09 E-value: 5.86e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd19981 1 KIGFFAPLTGPAAADGKSALHGAELAVEQINAAGGINGKKVELVVYDDQASPKQAVNIAQKLIEqDKVVAVVSGSYSGPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARGyQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGL 185
Cdd:cd19981 81 RAAAPIFQEAKVPMVSAYAVHPDITKAG-DYVFRVAFLGPVQGRAGAEYAVKDLGAKKVAILTIDNDFGKSLAAGFKEEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 186 KKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAE 265
Cdd:cd19981 160 KKLGAEIVSEYAYALGDRDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELGIKVPIIGQEGYDSPKFIEIAGSAAE 239
|
250
....*....|.
gi 1447699773 266 GLLVTKPKNYD 276
Cdd:cd19981 240 GVIITTSLNRD 250
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-346 |
1.76e-48 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 166.97 E-value: 1.76e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIK---GNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCS 102
Cdd:cd06340 1 KIGVLYPLSGPLALIGQEAKRGAELAVDEINAAGGIKslgGAKIELVVADTQSDPEVAASEAERLITqEGVVAIIGAYSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 103 SSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILE-----KVKPQRIAIVHDKQQYGEGL 177
Cdd:cd06340 81 SVTLAASQVAERYGVPFVTASAVADEITERGFKYVFRTAPTASQFAEDAVDFLKElakkkGKKIKKVAIIYEDSAFGTSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 178 ARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQ-FMGP-EGVANVS 255
Cdd:cd06340 161 AKGLKKAAKKAGLEVVLDEPYPAGATDLSSEVLKLKAAKPDVVFATSYTNDAILLLRTMKELGFKPKaIIGVgGGYSDPE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 256 LSNIAGESAEGLLVTKPKNYDQV---PANKPIVDAIKAK-KQDPSGAFVwTTYAALQSLQAGLNQ--SDDPAEIAKyLKA 329
Cdd:cd06340 241 FLKALGKDAEGVFSVVPWSPDLAkkkPGAKEVNERYKKKyGEDMTGHAA-RAYTAAWVLADALERagSTDPEAIRA-AAA 318
|
330 340
....*....|....*....|...
gi 1447699773 330 NSVDT------VMGPLTWDEKGD 346
Cdd:cd06340 319 LTLDIpeglimPGGGVKFDEKGQ 341
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
26-345 |
4.89e-46 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 160.52 E-value: 4.89e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 26 IKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSS 104
Cdd:pfam13458 2 IKIGVLTPLSGPYASSGKSSRAGARAAIEEINAAGGVNGRKIELVVADDQGDPDVAAAAARRLVdQDGVDAIVGGVSSAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 105 TQPASDIYEDEGILMITPAATAPELTARGyqlILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:pfam13458 82 ALAVAEVLAKKGVPVIGPAALTGEKCSPY---VFSLGPTYSAQATALGRYLAKELGGKKVALIGADYAFGRALAAAAKAA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGL--KTQFMGPEGVANVSLSNIAGE 262
Cdd:pfam13458 159 AKAAGGEVVGEVRYPLGTTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAGLdaKGIKLVGLGGDEPDLKALGGD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 263 SAEGLLVTKPKNYD-QVPANKPIVDAIKAK-KQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEIAKYLKANSVDTVMGP 338
Cdd:pfam13458 239 AAEGVYATVPFFPDlDNPATRAFVAAFAAKyGEAPPTQFAAGGYIAADLLLAALEAagSPTREAVIAALRALPYDGPFGP 318
|
....*..
gi 1447699773 339 LTWDEKG 345
Cdd:pfam13458 319 VGFRAED 325
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
27-345 |
2.80e-45 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 158.49 E-value: 2.80e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd06330 1 KIGVITPLSGAAAVYGEPARNGAELAVEEINAAGGILGRKIELVVRDDKGKPDEAVRAARELVLqEGVDFLIGTISSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTA-RGYQLILRTTGLDSDQGPTAAKYILEK-VKPQRIAIVHDKQQYGEGLARAVQD 183
Cdd:cd06330 81 LAVAPVAEELKVLFIATDAATDRLTEeNFNPYVFRTSPNTYMDAVAAALYAAKKpPDVKRWAGIGPDYEYGRDSWAAFKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 184 GLKKGNANVVFFDGITA--GEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGL--KTQFMGPEGVANVSLSNI 259
Cdd:cd06330 161 ALKKLKPDVEVVGELWPklGATDYTAYITALLAAKPDGVFSSLWGGDLVTFVKQAKPYGLfdKTKVVSGLGGGSEVLQAL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 260 AGESAEGLLVTK--PKNYDQVPANKPIVDAIKAK-KQDPSGaFVWTTYAALQSLQAGLN--QSDDPAEIAKYLKANSVDT 334
Cdd:cd06330 241 GKEMPEGLIGGGryPFGWPDTPLNKAFVEAYRAKyGEYPTY-WAYEAYAAVMALKAAIEkaGSTDTDKVIAALEGLTFDT 319
|
330
....*....|.
gi 1447699773 335 VMGPLTWDEKG 345
Cdd:cd06330 320 PGGKITIRAED 330
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-342 |
7.75e-45 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 157.40 E-value: 7.75e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIK-GNK---LQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLC 101
Cdd:cd06336 1 KIGFLGPLSGPAAAWGLPMLRGLELAADEINAAGGIKvGGKkykVEVVSYDDKYTPAEAVAAARRLVSqDGVKFIFGPGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 102 SSSTQPASDIYEDEGILMITpAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIV----HDKQQYGEGL 177
Cdd:cd06336 81 SAIAAAVQPVTERNKVLLLT-AAFSDPILGPDNPLLFRIPPTPYEYAPPFIKWLKKNGPIKTVALIapndATGKDWAAAF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 178 ARAVQD-GLKkgNANVVFFDgitAGEKDFSTLVARLKKENIDFVYYGGYHPEM-GQILRQARAAGLKTQFMGPEGV-ANV 254
Cdd:cd06336 160 VAAWKAaGGE--VVAEEFYD---RGTTDFYPVLTKILALKPDALDLGGSSPGPaGLIIKQARELGFKGPFVSEGGAkADE 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 255 SLSNIAGESAEGLLVTKPKNYDQ--VPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLN--QSDDPAEIAKYLKAN 330
Cdd:cd06336 235 ILKEVGGEAAEGFIGVLPADDDPiaSPGAKAFVERYKKKYGEPPNSESALFYDAAYILVKAMEkaGTVDDTKKIRAALAM 314
|
330
....*....|....
gi 1447699773 331 S--VDTVMGPLTWD 342
Cdd:cd06336 315 LspDETLFGKLKWG 328
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
26-342 |
1.01e-44 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 157.34 E-value: 1.01e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 26 IKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSS 104
Cdd:cd06343 7 IKIGTSLPLSGPAAAYGKPVRAGAAAYFDEVNAAGGINGRKIELIVEDDGYDPARAVAAVRKLVEqDKVFAIVGGLGTPT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 105 TQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd06343 87 NLAVRPYLNEAGVPQLFPATGASALSPPPKPYTFGVQPSYEDEGRILADYIVETLPAAKVAVLYQNDDFGKDGLEGLKEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVAN-VSLSNIAGES 263
Cdd:cd06343 167 LKAYGLEVVAEETYEPGDTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLGWKPTFLGSSVSADpTTLAKAGGDA 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 264 AEGLLVT---KPKNYDQVPANKPIVDAIKAK-KQDPSGAFVWTTYAALQSLQAGLNQSDDPAEIAKYLKA-----NSVDT 334
Cdd:cd06343 247 AEGVYSAsylKDPTDADDPAVKEFREAYKKYfPDDPPNAYALYGYAAAQVFVEALKRAGKDLTREGLIKAleslkDFDDG 326
|
....*....
gi 1447699773 335 VMG-PLTWD 342
Cdd:cd06343 327 GPGpPVTFS 335
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-349 |
5.86e-44 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 155.08 E-value: 5.86e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd06348 1 KIGVALSLTGPGALYGQSQKNGAQLAVEEINAAGGVGGVKIELIVEDTAGDPEQAINAFQKLINqDKVLAILGPTLSSEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARGyQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHD-KQQYGEGLARAVQDG 184
Cdd:cd06348 81 FAADPIAQQAKVPVVGISNTAPGITDIG-PYIFRNSLPEDKVIPPTVKAAKKKYGIKKVAVLYDqDDAFTVSGTKVFPAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVffDGIT--AGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGE 262
Cdd:cd06348 160 LKKNGVEVL--DTETfqTGDTDFSAQLTKIKALNPDAIVISALAQEGALIVKQARELGLKGPIVGGNGFNSPDLIKLAGK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 263 SAEGLLVTKPKNYDQV-PANKPIVDAIKAKKQDPSGAF-------VWTTYAALQSLQAGLNQSDDPAEIAKYLKANSVDT 334
Cdd:cd06348 238 AAEGVIVGSAWSPDNPdPKNQAFVAAYKEKYGKEPDQFaaqaydaAYILAEAIKKAGSTTDRADLRDALARILIAKDFEG 317
|
330
....*....|....*
gi 1447699773 335 VMGPLTWDEKGDLKG 349
Cdd:cd06348 318 PLGPFSFDADRDGIQ 332
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-307 |
1.71e-43 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 152.40 E-value: 1.71e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDG-IKYVIGHLCSSST 105
Cdd:cd19986 1 KIGVVAPLTGPAALNGEYQKNGAQLALEEINAAGGVLGRPLELVVEDDQGTNTGAVNAVNKLISDDkVVAVIGPHYSTQV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITpAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGL 185
Cdd:cd19986 81 LAVSPLVKEAKIPVIT-GGTSPKLTEQGNPYMFRIRPSDSVSAKALAKYAVEELGAKKIAILYDNDDFGTGGADVVTAAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 186 KKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAE 265
Cdd:cd19986 160 KALGLEPVAVESYNTGDKDFTAQLLKLKNSGADVIIAWGHDAEAALIARQIRQLGLDVPVIGSSSFATPTVLLLAGEALE 239
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1447699773 266 GLL-VTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAAL 307
Cdd:cd19986 240 GIYsVTDFVPSDPDPKVQAFVKKYKAKYGEDPDLYSAWYYDAM 282
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-256 |
3.52e-38 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 138.95 E-value: 3.52e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQ 106
Cdd:cd19985 1 HIAVVGPMSGKSASKGKSMLRGAELYIDQINAAGGINGKKVKLDVFDDQNDPDAARKAAQIIVSDKALAVIGHYYSSASI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 107 PASDIYEDEGILMITPAATAPELTA--RGYqliLRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd19985 81 AAGKIYKKAGIPAITPSATADAVTRdnPWY---FRVIFNDSLQGRFLANYAKKVLKKDKVSIIYEEDSYGKSLASVFEAT 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1447699773 185 LKKGNANVVFFDGITAGEKDFS----TLVARLKK--ENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSL 256
Cdd:cd19985 158 ARALGLKVLKKWSFDTDSSQLDqnldQIVDELKKapDEPGVIFLATHADEGAKLIKKLRDAGLKAPIIGPDSLASESF 235
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-346 |
6.92e-38 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 139.32 E-value: 6.92e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSgpvAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd06345 1 KIGVLGPLS---APAGEAMERGAELAVEEINAAGGILGRKVELVVADTQGKPEDGVAAAERLITeDKVDAIVGGFRSEVV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTAR------GYQLILRTTGLDSDQGPTAAKYIL----EKVKPQRIAIVHDKQQYGE 175
Cdd:cd06345 78 LAAMEVAAEYKVPFIVTGAASPAITKKvkkdyeKYKYVFRVGPNNSYLGATVAEFLKdllvEKLGFKKVAILAEDAAWGR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 176 GLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGpegvANVS 255
Cdd:cd06345 158 GIAEALKKLLPEAGLEVVGVERFPTGTTDFTPILSKIKASGADVIVTIFSGPGGILLVKQWAELGVPAPLVG----INVP 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 256 LSNI-----AGESAEGLLVTKPkNYDQVPAN---KPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEIAK 325
Cdd:cd06345 234 AQDPefwenTGGAGEYEITLAF-AAPKAKVTpktKPFVDAYKKKYGEAPNYTAYTAYDAIYILAEAIERagSTDPDALVK 312
|
330 340
....*....|....*....|.
gi 1447699773 326 YLKANSVDTVMGPLTWDEKGD 346
Cdd:cd06345 313 ALEKTDYEGVRGRIKFDKKDE 333
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
27-294 |
1.66e-35 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 132.29 E-value: 1.66e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd06333 1 KIGAILSLTGPAASLGIPERNAVELLVEQINAAGGINGRKLELIVYDDESDPTKAVTNARKLIEeDKVDAIIGPSTTGES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPeLTARGYQLILRTTGLDSDQGPTAAKYILEK-VKpqRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd06333 81 LAVAPIAEEAKVPLISLAGAAA-IVEPVRKWVFKTPQSDSLVAEAILDYMKKKgIK--KVALLGDSDAYGQSGRAALKKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESA 264
Cdd:cd06333 158 APEYGIEIVADERFARTDTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGYKGPIYQSHGAANQDFIKLAGKAA 237
|
250 260 270
....*....|....*....|....*....|..
gi 1447699773 265 EGLLVTKPKN--YDQVPANKPIVDAIKAKKQD 294
Cdd:cd06333 238 EGVILPAGKLlvADQLPDSDPQKKVLLEFVKA 269
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-308 |
2.37e-33 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 125.86 E-value: 2.37e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd19982 1 KIGAILSLTGPFAPFGEMFKNGYEMALEEINAAGGIKGKKLELVIEDDQSKPQTALAAAEKLVSqDKVPLIVGGYSSGIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGL 185
Cdd:cd19982 81 LPVAAVAERQKIPLLVPTAADDDITKPGYKYVFRLNPPASIYAKALFDFFKELVKPKTIAILYENTAFGTSVAKAARRFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 186 KKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQ-FMGpeGVANVSLSNI---AG 261
Cdd:cd19982 161 KKRGIEVVADESYDKGATDFKPLLNKVKAANPDVVYMVSYLNDAILLMRQAKELGLNPKlFAG--GGAGFTIPEFlkqAG 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1447699773 262 ESAEGLLVTKPKNYD-QVPANKPIVDAIKAK-KQDPS--GAfvwTTYAALQ 308
Cdd:cd19982 239 PLAEYVVTATLWSPDvKYPGAKEFYEKYKAKyGVEPSyhEA---EAYAALY 286
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-270 |
4.04e-31 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 119.61 E-value: 4.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQ 106
Cdd:cd19983 1 RIGFVGGLTGRYSDLGVQGRNGAQLAVEEINAAGGINGRPVELIIRDDQQDPEAAKAADRELIAGGVVAIIGHMTSAMTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 107 PASDIYEDEGILMITPAATAPELTARGYQLIlRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDK--QQYGEGLARAVQDG 184
Cdd:cd19983 81 AVLPVINEAKVLMISPTVSTPELSGKDDYFF-RVTPTTRESAQALARYAYNRGGLRRVAVIYDLsnRAYSESWLDNFRSE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVV---FFDgiTAGEKDFSTLVARLKKENID--FVYYGGYHPEMgqILRQARAAGLKTQFMGPEGVANVSLSNI 259
Cdd:cd19983 160 FEALGGRIVaeiPFS--SGADVDFSDLARRLLASKPDglLLVASAVDTAM--LAQQIRKLGSKIPLFSSAWAATEELLEL 235
|
250
....*....|.
gi 1447699773 260 AGESAEGLLVT 270
Cdd:cd19983 236 GGKAVEGMLFS 246
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
27-310 |
1.04e-29 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 115.84 E-value: 1.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANK-VVNDGIKYVIGHLCSSST 105
Cdd:cd19989 1 KIGVLTPLSGPYAALGEEARRGAQLAVEEINAAGGILGRPVELVVEDTEGKPATAVQKARKlVEQDGVDFLTGAVSSAVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELT-ARGYQLILRTTGLDSDQGPTAAKYILEKvKPQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd19989 81 LAVAPKAAELKVPYLVTVAADDELTgENCNRYTFRVNTSDRMIARALAPWLAEN-GGKKWYIVYADYAWGQSSAEAFKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFM--GPEGVANVSLSNIAGE 262
Cdd:cd19989 160 IEELGGEVVGTLFAPLGTTDFSSYITQISDSGADGLLLALAGSDAVNFLKQAGQFGLGKKYKivGGILSIEPLALPALGD 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1447699773 263 SAEGLLVTkpKNYD---QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSL 310
Cdd:cd19989 240 AAEGVYGG--VRYPptlDTPANRAFVEAYEKEYGEAPDNFAGEAYEAMQAL 288
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
27-340 |
3.79e-28 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 112.37 E-value: 3.79e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQ 106
Cdd:cd06329 1 KIAFIDPLSGPFASVGEIYLKGLQFAIEEINAGGGLLGRKIELVPFDNKGSPQEALIQLKKAIDQGIRFVLQGNSSAVAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 107 PASDIYE-------DEGILMITPAATAPELTARG---YQliLRTTGLDSDQGPTAAKYILEKVKPQRIAIVHdkQQYGEG 176
Cdd:cd06329 81 ALIDAIEkhnqrnpDKRVLFLNYGAEAPELTGAKcsfWH--FRFDANADMKMAALADYMKKDGSIKKVYLIN--QDYSFG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 177 --LARAVQDGLKK--GNANVVFFDGITAGE-KDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQF----MG 247
Cdd:cd06329 157 rdVAAAAKKNLKKkrPDIEIVGEDLHPLGKvKDFSPYIAKIKASGADTVITGNWGNDLTLLMKAARDSGLKAPFytyyAD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 248 PEGVANVslsniAGESAEGLLVTKPKNYDQV--PANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEI 323
Cdd:cd06329 237 GPGAPAA-----IGEAGVGRLVAVAYWHPNPktPELEKFAEAFRAKYGRYPDFNIGRTYMGVEMLAAAIKKagSTDPEKV 311
|
330
....*....|....*..
gi 1447699773 324 AKYLKANSVDTVMGPLT 340
Cdd:cd06329 312 AKALEGLSFDTPGGPVT 328
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
27-346 |
4.67e-28 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 111.92 E-value: 4.67e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKggIKGNKLQIVKYDDACDPKQAVAVANK-VVNDGIKYVIGHLCSSST 105
Cdd:cd06332 1 KIGLLAPLTGPFAALGEDMVRGFELALEEVGGE--VAGRKVELVVEDDAGDPDTAVTKARKlVEQDKVDVLIGPLSGDEG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARG-YQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd06332 79 LAVAPYAKEPGVPFINPVAGADDLTQRAkAPNFFRTSFTGSQWSAPLGDYAYKELGYKKVATIGSDYAFGYEQAAGFKRG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVV--FFdgITAGEKDFSTLVARLKKEnIDFVYYGGYHPEMGQILRQARAAGLK--TQFMGPEGVANVSLSNIA 260
Cdd:cd06332 159 FEAAGGEVVqeIW--VPLGTTDFSPYIAQIPSA-DDAVFAFLGGADAVRFLKQYREFGLKdkIPLIGGGTTVDESVLPAM 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 261 GESAEGL---LVTKPKNYDqvPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQS----DDPAEIAKYLKANSVD 333
Cdd:cd06332 236 GDAALGIisaSHYAEGLDN--PENKKFVAAYKKKFGKLPSLYAAGGYDGAQAILEALEAVggdvSDKQALAAALRKVKFD 313
|
330
....*....|...
gi 1447699773 334 TVMGPLTWDEKGD 346
Cdd:cd06332 314 SPRGPFSFDENRN 326
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
27-343 |
1.05e-25 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 105.38 E-value: 1.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd06331 1 KIGLLTPLSGPASVYGRAIANGAELAVEEINAAGGVLGRPVELVVEDDASDPATAVAAARRLIQqDKVDAIVGPITSATR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARgyqLILRTTGLDSDQGPTAAKYILEKVKPqRIAIVHDKQQYGEGLARAVQDGL 185
Cdd:cd06331 81 NAVAPVAERAKVPLLYPTFYEGGECSP---YLFCFGEVPNQQLDPLIPWLMEEYGK-KFYLIGSDYVWPRTMNDAARRVI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 186 KKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQF--MGPeGVANVSLSNIAGES 263
Cdd:cd06331 157 EAHGGEVVGEEYLPLGTTDFSSVIEKIKASGADVVLSTLVGADAVTFLKQFAAAGLRRKVriAAL-LFDENTLAGLGAEA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 264 AEGLLVTKPknYDQV---PANKPIVDAIKAK---KQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEIAKYLKANSVDTV 335
Cdd:cd06331 236 AEGIYSVLS--YFQSldtPENKAFVAAYRKKfgeDAPPITSLSEAAYEAVHLYAAAVEKagSTDPEAVIAALPGVSFDGP 313
|
....*...
gi 1447699773 336 MGPLTWDE 343
Cdd:cd06331 314 QGPVTMDP 321
|
|
| PBP1_ABC_ligand_binding-like |
cd19978 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
26-270 |
3.23e-23 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 98.80 E-value: 3.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 26 IKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSS 104
Cdd:cd19978 1 IRLGMSAALSGPAAELGNEMKRGIEAAFNEVNAQGGVNGRKIKLIALDDGYEPDRTVKNTKKLIEeDKVFALIGYVGTPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 105 TQPASDIYEDEGILMITPAATAPELTARGYQLI--LRTTglDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQ 182
Cdd:cd19978 81 ALAALPLANEKKIPLFGPFTGAEFLRTPFLPYVfnLRAS--YADETEALVDYLVKTLGPKRIAIFYQNDAFGLAGLEGAK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 183 DGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGE 262
Cdd:cd19978 159 KALKKRGLTPVAEGSYTRNTLDVEEALAKILKAKPEAIILVGTYAPAAEFIRLARAAGLNPLFANVSFVGSEALALELGD 238
|
....*...
gi 1447699773 263 SAEGLLVT 270
Cdd:cd19978 239 YGEGVIVS 246
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-304 |
9.86e-23 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 97.70 E-value: 9.86e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHlcssST 105
Cdd:cd06334 1 KIGLLTDLTGPTADVGKPYAQGVRDYLNYVNEEGGINGVKIELEECDTGYKVPRAVACYKRLKAqDGVVAILGW----GT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QP----ASDIYEDeGILMITpAATAPELTARG----YQLILRTTglDSDQGPTAAKYILEKVKPQ----RIAIVHDKQQY 173
Cdd:cd06334 77 GDtealAPRVAKD-KIPYIS-ASYGRSLADDGkvfpYNFFVGAT--YSSQARALLKYIAQEWGGKlkgpKVAFVYHDSPF 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 174 GEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVAN 253
Cdd:cd06334 153 GREPIPALKAYAKELGFEVVAEQVPSPGALDATAQWLRIRRAGPDYVIIQGTGGSVAVIIKDAKRLGLKTKFIGNIWGGD 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1447699773 254 VSLSNIAGESAEGLLVTKPKN-YDQVPANKPIVDAIKAKKQDPSGAFVWTTY 304
Cdd:cd06334 233 EDLIKLAGDAAEGYVGVSPFAfGTDDPPGKEIVEEVAKKGKGDGPEEVGTVY 284
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
26-270 |
1.82e-22 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 96.46 E-value: 1.82e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 26 IKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSS 104
Cdd:cd06326 1 IVIGQSAPLSGPLAELGREYLAGAKAYFDQVNAAGGINGRKIRLVTLDDGYDPARTVENTRQLIeQDKVVALFGYVGTAN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 105 TQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQgptaAKYILEKVKP---QRIAIVHDKQQYGEGLARAV 181
Cdd:cd06326 81 VEAVLPLLEEAGVPLVGPLTGADSLREPGNPYVFHVRASYADE----VEKIVRHLATlglKRIAVVYQDDPFGKEGLAAA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 182 QDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAG 261
Cdd:cd06326 157 EAALAARGLEPVATAAVARNAADVAAAAAALAAAKPQAVVLIAAGKAAAAFIKALRAAGGAAQFYGLSVVGAAALAKALG 236
|
....*....
gi 1447699773 262 ESAEGLLVT 270
Cdd:cd06326 237 DAARGVVVS 245
|
|
| ANF_receptor |
pfam01094 |
Receptor family ligand binding region; This family includes extracellular ligand binding ... |
44-360 |
6.75e-22 |
|
Receptor family ligand binding region; This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.
Pssm-ID: 460062 [Multi-domain] Cd Length: 347 Bit Score: 95.14 E-value: 6.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 44 QEFTGAEQAVADINAKGGIKGN-KLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITP 122
Cdd:pfam01094 1 LVLLAVRLAVEDINADPGLLPGtKLEYIILDTCCDPSLALAAALDLLKGEVVAIIGPSCSSVASAVASLANEWKVPLISY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 123 AATAPELTARG-YQLILRTTGLDSDQGPTAAKyILEKVKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITaG 201
Cdd:pfam01094 81 GSTSPALSDLNrYPTFLRTTPSDTSQADAIVD-ILKHFGWKRVALIYSDDDYGESGLQALEDALRERGIRVAYKAVIP-P 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 202 EKDFSTLVARLKKE---NIDFVYYGGYHPEMGQILRQARAAGLKTQ---FMGPEGVAN--VSLSNIAGESAEGLLVTKpk 273
Cdd:pfam01094 159 AQDDDEIARKLLKEvksRARVIVVCCSSETARRLLKAARELGMMGEgyvWIATDGLTTslVILNPSTLEAAGGVLGFR-- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 274 nydQVPANKPIVDAIKAKKQDPSGAFVWTTYA------------------ALQSLQAGLNQSDDPAE---------IAKY 326
Cdd:pfam01094 237 ---LHPPDSPEFSEFFWEKLSDEKELYENLGGlpvsygalaydavyllahALHNLLRDDKPGRACGAlgpwnggqkLLRY 313
|
330 340 350
....*....|....*....|....*....|....
gi 1447699773 327 LKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHAN 360
Cdd:pfam01094 314 LKNVNFTGLTGNVQFDENGDRINPDYDILNLNGS 347
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
27-343 |
1.43e-20 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 91.53 E-value: 1.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGikGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSST 105
Cdd:cd20014 1 KIGLLLPYSGVYAALGEDIRNGFQLYLDEHGGKLG--GRPIELVKEDDEADPDVALQKARKLIeQDKVDVLVGPVSSGVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELT-ARGYQLILRTTGLDSDQGPTAAKYILEKVKpQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd20014 79 LAIRDVVEQAKVPLIVANAGANALTrAACSPYIFRTSFSNWQLGYALGKYAAENVG-KTVVTIASDYAAGREVVAGFKEG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVFFDGITAGE-KDFSTLVARLKKENIDFVY--YGGyhPEMGQILRQARAAGL--KTQFMGPEGVANVSLSNI 259
Cdd:cd20014 158 FEAAGGKVVGEIWTPLGTtTDFSPYLTQIAASGPDAVYafFAG--ADAVRFVKQYAEFGLkgKIPLYGPGFLTDEDVLPA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 260 AGESAEGLLVTKPKNYDQV-PANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQ----SDDPAEIAKYLKANSVDT 334
Cdd:cd20014 236 LGEAAEGIITVLHYAPTLDnPANRAFVAAYQAKYGRLPDVYAVQGYDAAQVIDAALEAvggdTSDKDILAAALELGSIDS 315
|
....*....
gi 1447699773 335 VMGPLTWDE 343
Cdd:cd20014 316 PRGPFRFDP 324
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
27-345 |
8.29e-17 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 80.80 E-value: 8.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGikGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSST 105
Cdd:cd06360 1 KIGVLLPLTGPLAVNGEDVRDGFELYFDEIGNQVA--GRKIELIVEDDEGKPDVGLTKARKLVeRDKVHVLAGIVSSAVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGI-LMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd06360 79 YAVRDYVVEQKIpLVISNAGAAPLTQELASPYIFRTSFSNGQYDAPFGQYAYEKLGYRRIAVMASDYAAGHEQAGAFART 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVffDGITA--GEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQF--MGPEGVANVSLSNIA 260
Cdd:cd06360 159 FKQAGGKVV--QEIYPplGTADFAPYLARIQQDAADAVWAFFAGADAIRFVKQYDEYGLKGKLplVGIGGLVDDAILPEQ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 261 GESAEGLLVTKPKNYD-QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGL-----NQSDDPAEIAKyLKANSVDT 334
Cdd:cd06360 237 GDAALGIVSYLHYSAAlDTPENKAFVQAYRKKYGRDPGLYAEGGYVAARAIAEALeavkgNVEDKEAFLEA-LRKVRFEA 315
|
330
....*....|.
gi 1447699773 335 VMGPLTWDEKG 345
Cdd:cd06360 316 PRGPFRFDPYQ 326
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
27-340 |
5.11e-16 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 78.11 E-value: 5.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVA-DINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSS 104
Cdd:cd06328 1 KIGVITSLTGPLAAYGKQTERGFELGLEyATDGTMEVDGRKIEVIVKDDQGDPDTAKAAATELIgDDGVDILVGTVSSAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 105 TQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd06328 81 ALALAPVAEQNKKILIVGPAAADSITGENWNKYTFRTSRNSWQDAIAGAKALADPLGKSVAFLAQDYAFGQDGVAAFKKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVFFDGITAGEKDFSTLVARL---KKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAG 261
Cdd:cd06328 161 LEAKGGKIVGEELVPVTTTDFTPYLQRIldaKPDVLFVAWAGTGALTLWQQLADQGVLDDIKVVTGGPDIATLAALGDAL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 262 ESAEGLLV---TKPKNydqvPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGL---NQSDDPAEIAKYLKANSVDTV 335
Cdd:cd06328 241 PGIEGLTYyyyGLPKN----PVNDWLVKAHKERYNAPPDLFTAGGFAAAQAVVRALekaGGDTDVEKLIAALEGLTFETP 316
|
....*
gi 1447699773 336 MGPLT 340
Cdd:cd06328 317 KGKMT 321
|
|
| PBP1_YraM_LppC_lipoprotein-like |
cd06339 |
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup ... |
27-267 |
4.84e-15 |
|
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Pssm-ID: 380562 [Multi-domain] Cd Length: 331 Bit Score: 75.00 E-value: 4.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINakggikGNKLQIVKYDDAcDPKQAVAVANKVVNDGIKYVIGHLCSSSTQ 106
Cdd:cd06339 1 RIALLLPLSGPYAAAGQAIRDGIELALFDAG------GSRPELRVYDTG-GPEGAAAAYQQAVAEGADLIIGPLLKSSVA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 107 PASDIYEDEGILMITPAATAPELTARG-YQLilrttGLDS-DQGPTAAKYILEKVKpQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:cd06339 74 ALAAAAQALGVPVLALNNDESATAGPGlFQF-----GLSPeDEARQAARYAVQQGL-RRFAVLAPDNAYGQRVANAFREA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVFFDGITAGEKDFSTLVARLKK----------------------ENIDFVYYGGYHPEMGQILRQARAAGL- 241
Cdd:cd06339 148 WQALGGTVVAVESYDPDETDFSAAIRRLLGvdqsearirqlgellefeprrrQDFDAIFLPAGPEQARLIAPQLAFYGAg 227
|
250 260
....*....|....*....|....*.
gi 1447699773 242 KTQFMGPEGVANVSLSNIAGESAEGL 267
Cdd:cd06339 228 DVPLLGTSLWYSGKLNLLRDPDLNGA 253
|
|
| PBP1_SBP-like |
cd19987 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
35-341 |
5.07e-13 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380642 [Multi-domain] Cd Length: 353 Bit Score: 69.28 E-value: 5.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 35 SGPVAQYGDQEFTGAEQAVADINAKG------------GIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLC 101
Cdd:cd19987 9 SGPYAPQGEDQRRGFELAVDHLNNGGglvdkdsrlsgdGILGKKVELVTADTETKADTAVDNAKRLIEqDGAVMITGGSS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 102 SSSTQPASDIYEDEGILMITPAATAPEltargyqlilrTTGLD--------SDQGPTAAK---YILEKV--KPQRIAIVH 168
Cdd:cd19987 89 SAVAVAAQKLAQKEGVLYFAGLSHSND-----------TTGKDchrygfreCFNAHMSAKalaPYLVEKfgKDRKYFYLT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 169 DKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGL--KTQFM 246
Cdd:cd19987 158 ADYTWGHSTEQSMREYTEAHGWKTVGNPATPLGETDFSAALLNAADSGADVLVLVLFGRDMVNALKQAKQFGLlkKMDIV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 247 GPegvaNVSLS---NIAGESAEGLLVTKPKNY---DQVPANKPIVDAIKAKKQDPSGAFVWTTYAalQSLQ-------AG 313
Cdd:cd19987 238 VP----LLTAFmaeSVGPEIMEGVLGTVNWHWslpDDYSYAFGKAEAFEKEYGAYPSQAAASAYV--QVLQyaaaverAG 311
|
330 340
....*....|....*....|....*...
gi 1447699773 314 lnqSDDPAEIAKYLKANSVDTVMGPLTW 341
Cdd:cd19987 312 ---SFDPPAVIRALEGHEYTLLKGEQYW 336
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
27-242 |
1.80e-12 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 67.64 E-value: 1.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDgiKYVIGHLCSSSTQ 106
Cdd:cd19979 1 VIGLDADLSGGSAASGEAIKRGIQLAIDEINAAGGLLGRKLELVAKDHRGNPARGVDNLREFAAD--PDVLAVFGGLHSP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 107 PASDIYED---EGILMITPAATAPELTARGYQL--ILRTTGLDSDQGPTAAKYILeKVKPQRIAIVHDKQQYGEGLARAV 181
Cdd:cd19979 79 VLLAELDFiheLKIPYLVPWAAATPITRNGYSPnyIFRLSVDDSLAGPFLVEYAL-KKGCKRPALLLENTGWGRSNLKAM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1447699773 182 QDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILR--QARAAGLK 242
Cdd:cd19979 158 TKALAKKGLQPVGVEWFNWGDTDAKPQLRALKAAGADAILLVANAPEGAAIVKalAALPERLP 220
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-329 |
3.96e-12 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 66.56 E-value: 3.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAqyGD-QEFTGAEQAVAD-INAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGhlcSS 103
Cdd:cd06341 1 KIGLIYPDTGPGA--ASfSAARAGAEARFGlANAAGGINGRKVEYVWCDDQSDPATNLQAARQLVeDEKVFALVG---SS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 104 STQPAS--DIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQgpTAAKYILEKVKPQRIAIVHDKQQYGEGLARAV 181
Cdd:cd06341 76 SAASGSanDYLAQAGIPVVGGAGVSVWCFRNMFSNFFSLGGGGSTT--TYGQYAAALGGTKAAVVVTDIPAASQQLAQQL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 182 QDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAG 261
Cdd:cd06341 154 AASLRAAGVEVVGTAPYAAAAPDYTAVAQAAKAAGADAVVGVLDPDVAARVLKAARAQGLDLKVALSPSGYDPSVLAAYG 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1447699773 262 ESAEGLLVTKP--KNYDQVPANKPIVDAIKA---KKQDPSGAFVWTTYAALQSLQAGLNQSDD---PAEIAKYLKA 329
Cdd:cd06341 234 AALAGVSVASTflPFEADTPAVKAYRAAMAKyapELQDPLQQFALSGYIAADLFVRGLEAAGGcptRAAFIKALRD 309
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
27-344 |
6.58e-11 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 62.70 E-value: 6.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSST 105
Cdd:cd06356 1 KIGSIFDLSGGLNIYGKPMVHAMKLAVEEINAAGGLLGRQIELVAYDTQSDMQKYTQYAQQLIlRDKVDVVFGGITSASR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITP----AATAPELTArgyqlilrTTGLDSDQG-PTAAKYILEKVKPqRIAIVHDKQQYGEGLARA 180
Cdd:cd06356 81 EAIRPILRRNKILYFYNtqyeGGVCDKNTF--------CTGSTPEQQvSPLIEWAIKKYGK-KVYIIAADYNFGQISADW 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 181 VQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYY---GGYHpemGQILRQARAAGLKtqfmgpEGVANVSLS 257
Cdd:cd06356 152 VKKYAKKNGGEVVGEEFFPLDVTDFGPTIQKIQAAKPDFVVSllvGGNH---ISFYRQWAAAGLK------KKIPIVSTV 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 258 NIAG--------ESAEGLLVTkPKNYDQV--PANKPIVDAIKAK--KQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEI 323
Cdd:cd06356 223 FGAGnehkvlspPELEGMYVS-YSYFEELdtPANKAFVAKWRAKygDEPYINQEAVGVYNAVYLWAEAVEKagSTEREAV 301
|
330 340
....*....|....*....|..
gi 1447699773 324 AKYLKAN-SVDTVMGPLTWDEK 344
Cdd:cd06356 302 IAALESGiSFDGPSGTVTVDPK 323
|
|
| PBP1_SBP-like |
cd20378 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
27-338 |
7.35e-11 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380668 [Multi-domain] Cd Length: 357 Bit Score: 62.75 E-value: 7.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVAdinAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd20378 1 TLGGLVSMSGAFAAAGKLADRGMRLAVE---EYGGALGRPLKYITRDTEGKPGTGVRKVQEAIAqDGARFFIGGTLSSVA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAAtAPELT------------ARGYQLILRTTGLDSDQGPTAAKYILekVKPQRIaivhdkqqY 173
Cdd:cd20378 78 LAVSEEAEKAGGVYITSGG-ADEITgsrcnrstfrwsVPTYGAIRQTVRPVIKAMPKAKRWYT--ITPQYV--------F 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 174 GEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLK--TQFMGPEGV 251
Cdd:cd20378 147 GESLLKNAKEVLKEKGIEHVGNSYHSLGEREFSGYLTKAMAARPDVLLILNFGSQAVDALRQAVSFGLKrkMKILVAWSS 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 252 ANVSLSNIAGESAEGLLVTKpkNYDQ---VPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQ--SDDPAEIAKY 326
Cdd:cd20378 227 GLDQFQELGPDICEGVYFGA--QYWHdvdTPANKALVKVYQAKFKETPSYALAAGYACTRMLLDAIDKagSTDPAAVIKA 304
|
330
....*....|..
gi 1447699773 327 LKANSVDTVMGP 338
Cdd:cd20378 305 LEGLKYDGITGD 316
|
|
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
27-344 |
5.48e-10 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 60.28 E-value: 5.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANK-VVNDGIKYVIGhLCSSST 105
Cdd:cd06357 1 RVGLLFSQTGVTAIIEQSMLNGALLAIEEINAAGGVNGRPIEPVVYDPASDPDRYRELAERlLLEDGVRHIFG-CYTSAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPAsdiyedegilMItpaataPELTARGYQLILRT--TGLDSDQ-----GPTA-------AKYILEKVKPqRIAIVHDKQ 171
Cdd:cd06357 80 RKA----------VL------PVVERHNALLWYPTpyEGFEYSPnviytGAVPnqhllplARYLLAHFGK-RVFLVGSNY 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 172 QYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYY-----GGYHpemgqILRQARAAGLKTQFM 246
Cdd:cd06357 143 VYPWESNRVARELIEASGGEVVGERYVPLGDTDFAEIIEEIKSLKPDVVFStlvgdSIYA-----FYRAYAEAGLDPADM 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 247 gPegVANVSLSN-----IAGESAEGLLVTKPknYDQ---VPANKPIVDAIKAK--KQDPSGAFVWTTYAALQSLQAGLNQ 316
Cdd:cd06357 218 -P--IASLTTSEaevaaIGAEAAAGHYTSAP--YFQsidTPENRAFVEAYRARfgDDAVTSAVAEAAYFQVHLLARAIER 292
|
330 340 350
....*....|....*....|....*....|
gi 1447699773 317 --SDDPAEIAKYLKANSVDTVMGPLTWDEK 344
Cdd:cd06357 293 agSDDPEAIRAALYGQEFDAPQGPVRIDPD 322
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
27-342 |
2.33e-09 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 58.04 E-value: 2.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVAdINAKgGIKGNKLQIVKYDDA-CDPKQAVAVANK-VVNDGIKYVIGHLCSSS 104
Cdd:cd20013 1 KVGVIGPFSGPFADYGKQFDRGIDLYLK-LHGD-KVGGRKVEVIYRDDGgPNPAVAKRLAQElIVRDKVQILIGFGFTPN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 105 TQPASDIYEDEGILMITPAATAPELTARGyQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDkqqYGEGL--ARAVQ 182
Cdd:cd20013 79 ALAVAPVATEAKTPTVIMNAATSSITRKS-PYFVRTSFTMWQVAYPMGKWAAKNGIKKAYTAVAD---YAPGHdaETAFK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 183 DGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYY---GGyhPEMGQILRQARAAGLK---TQFMGPEGVANVSL 256
Cdd:cd20013 155 KAFEAAGGKIVGSIRVPLATPDFAPFMQRIKDAKPDAVFVfvpAG--APSIGFLKAYAERGLKeagIKLLGTGDATDDDD 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 257 SNIAGESAEGLLVTkpKNY---DQVPANKPIVDAIKAK---KQDPSGAFV--WTTYAALQSLQAGLNQSDDPAEIAKYLK 328
Cdd:cd20013 233 LPAMGDAALGLITA--GHYsaaLDSPENKAFVAAYQKAygpDARPDFMAVaaYDGMALIYKMIKATGGKFDGDKAMAAVK 310
|
330
....*....|....
gi 1447699773 329 ANSVDTVMGPLTWD 342
Cdd:cd20013 311 GLKWESPRGPISID 324
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
27-340 |
2.42e-09 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 58.03 E-value: 2.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGikGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSST 105
Cdd:cd06359 1 KIGFITTLSGPAAVLGQDMRDGFNLALEQLGGKLG--GLPVEVVVEDDQLKPDVAKQAAERLIErDKVDFVTGIIFSNVM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGeglaRAVQDGL 185
Cdd:cd06359 79 LAVVKPVVDSKVFYISANAGPSDLAGKGCNPNFFVTSWQNDQLHEAAGKYANDKGYKRVYLLAPNYQAG----KDALAGF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 186 KKgnanvvFFDGITAGE-------KDFSTLVARLKKENIDFVYYggYHP-EMG-QILRQARAAGLKTQ--FMGPEGVANV 254
Cdd:cd06359 155 KR------TYKGEVVGEiytplgqLDFSAELAQIRAAKPDAVFA--FYPgGMGvNFVKQYAQAGLKKKipLYTVGTLDDE 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 255 SLSNIAGESAEGLLVTKPKNYD-QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQS----DDPAEIAKYLKA 329
Cdd:cd06359 227 DLLPAMGDAALGVLSVSQWSPDlDNPENKRFVAAFRKKYGRPPSNYAAQGYDAALLIDAAVKAVggdlSDKDALRAALRK 306
|
330
....*....|.
gi 1447699773 330 NSVDTVMGPLT 340
Cdd:cd06359 307 ADFKSVRGAFR 317
|
|
| PBP1_glutamate_receptors-like |
cd06269 |
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl ... |
27-274 |
5.43e-09 |
|
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as natriuretic peptide receptors (NPRs), and N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of ionotropic glutamate rece; This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type 1 family. The family C GPCRs consists of metabotropic glutamate receptor (mGluR), a calcium-sensing receptor (CaSR), gamma-aminobutyric acid receptor (GABAbR), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G).
Pssm-ID: 380493 [Multi-domain] Cd Length: 332 Bit Score: 57.04 E-value: 5.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVaQYGDQEFTGAEQAVADINAKGGI-KGNKLQIVKYDDACDPKQAVAVANKVVNDGIKY-VIGHLCSSS 104
Cdd:cd06269 1 TIGALLPVHDYL-ESGAKVLPAFELALSDVNSRPDLlPKTTLGLAIRDSECNPTQALLSACDLLAAAKVVaILGPGCSAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 105 TQPASDIYEDEGILMITPAATAPELTAR-GYQLILRTTGLDSDQGPTAAKyILEKVKPQRIAIVHDKQQYGEGLARAVQD 183
Cdd:cd06269 80 AAPVANLARHWDIPVLSYGATAPGLSDKsRYAYFLRTVPPDSKQADAMLA-LVRRLGWNKVVLIYSDDEYGEFGLEGLEE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 184 GLKKGNANVVFFDGITAG-EKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGL---KTQFMGPEGVAnvSLSNI 259
Cdd:cd06269 159 LFQEKGGLITSRQSFDENkDDDLTKLLRNLRDTEARVIILLASPDTARSLMLEAKRLDMtskDYVWFVIDGEA--SSSDE 236
|
250
....*....|....*....
gi 1447699773 260 AGESA----EGLLVTKPKN 274
Cdd:cd06269 237 HGDEArqaaEGAITVTLIF 255
|
|
| PBP1_FmdD-like |
cd06355 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
27-344 |
9.02e-09 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type 1 periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380578 [Multi-domain] Cd Length: 347 Bit Score: 56.43 E-value: 9.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANK-VVNDGIKYVIGHLCSSST 105
Cdd:cd06355 1 KVGILHSLSGTMAISERPLVDATLLAIDEINAAGGLLGRKIEPVIEDGASDWPTFAEKAEKlITQDKVAVIFGCWTSASR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 106 QPASDIYEDEGILMITPAAtapeltargYQlilrttGLDSDQ-----GPT-------AAKYILEKVKpQRIAIVHDKQQY 173
Cdd:cd06355 81 KAVLPVIEKYNGLLFYPVQ---------YE------GLEQSPnivytGATpnqqilpAIDWLLENLG-KRFFLVGSDYVF 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 174 GEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKE-------------NIDFvyyggyhpemgqiLRQARAAG 240
Cdd:cd06355 145 PRTANKIIRDQLKALGGEVVGEEYVPLGGTDFDAIVAKIKAFkpdvivntlngdsNIAF-------------FKQLAAAG 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 241 LKTQFMgPE---GVANVSLSNIAGESAEGLLVTkpKNYDQ---VPANKPIVDAIKAK--KQDPSGAFVWTTYAALQSLQA 312
Cdd:cd06355 212 ITASDL-PVlsfSVSEAELRAIGPEELAGHYAA--WNYFQsldTPENQAFVEAFKAKygADRVTSDPMEAAYLGVYLWAQ 288
|
330 340 350
....*....|....*....|....*....|....
gi 1447699773 313 GLN--QSDDPAEIAKYLKANSVDTVMGPLTWDEK 344
Cdd:cd06355 289 AVEkaGSFDPDAVRAALKGQSFEAPGGTVTVDPE 322
|
|
| PBP1_GPCR_family_C-like |
cd06350 |
ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory ... |
64-276 |
9.29e-08 |
|
ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate; categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (m; Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further divided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins.
Pssm-ID: 380573 Cd Length: 350 Bit Score: 53.07 E-value: 9.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 64 GNKLQIVKYDDACDPKQAVAVankvvndgikyvIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARG-YQLILRTTG 142
Cdd:cd06350 78 GIKLLANSNGQNIGPPNIVAV------------IGAASSSVSIAVANLLGLFKIPQISYASTSPELSDKIrYPYFLRTVP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 143 LDSDQGPTAAKyILEKVKPQRIAIVHDKQQYGEGLARAVQDGLKKGN---ANVVFFDgITAGEKDFSTLVARLK-KENID 218
Cdd:cd06350 146 SDTLQAKAIAD-LLKHFNWNYVSTVYSDDDYGRSGIEAFEREAKERGiciAQTIVIP-ENSTEDEIKRIIDKLKsSPNAK 223
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1447699773 219 FVYYGGYHPEMGQILRQARAAGLkTQFM--GPEGVANVS-LSNIAGESAEGLLVTKPKNYD 276
Cdd:cd06350 224 VVVLFLTESDARELLKEAKRRNL-TGFTwiGSDGWGDSLvILEGYEDVLGGAIGVVPRSKE 283
|
|
| Peripla_BP_5 |
pfam13433 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
26-344 |
9.41e-08 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins.
Pssm-ID: 463875 [Multi-domain] Cd Length: 363 Bit Score: 53.36 E-value: 9.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 26 IKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANK-VVNDGIKYVIGHLCSSS 104
Cdd:pfam13433 1 IKVGVLHSLTGTMAISERSLKDATLMAIEEINAAGGVLGRKIEPVVVDPASDWPLFAEKARKlIDQDKVRVVFGCWTSAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 105 TQPASDIYEDEGILMITPAATAPELTARGyqlILRTTGLDSDQGPTAAKYILEKvKPQRIAIVHDKQQYGEGLARAVQDG 184
Cdd:pfam13433 81 RKAVLPVFERHNGLLFYPVQYEGFESSRN---IFYTGAAPNQQAIPAVDYLLSE-LGKRFFLVGSDYVYPRTTNRILRAY 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 185 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMgPegVANVS-----LSNI 259
Cdd:pfam13433 157 LKAKGGEVVGERYLPLGSSDWQSIVAKIKAAGPDVVFSTINGDSNVAFYRALRAAGITAEDI-P--VMSFSvaeeeLAGM 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 260 AGESAEGLLVTkpKNYDQ---VPANKPIVDAIKAKKQDPS-----------GAFVWTtyAALQslQAGlnqSDDPAEIAK 325
Cdd:pfam13433 234 GPEPLVGHLAA--WNYFQsldTPENKAFVAAFKARYGDDRvtndpmeaayiGVHLWA--QAVE--KAG---TDDPDAVRQ 304
|
330
....*....|....*....
gi 1447699773 326 YLKANSVDTVMGPLTWDEK 344
Cdd:pfam13433 305 AMLGQEFDAPQGPVKIDPE 323
|
|
| PBP1_NHase |
cd06358 |
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively ... |
27-221 |
1.12e-07 |
|
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides; This group includes the type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified into two subgroups: ferric NHases and cobalt NHases.
Pssm-ID: 380581 [Multi-domain] Cd Length: 333 Bit Score: 52.98 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDG-IKYVIG-HLcSSS 104
Cdd:cd06358 1 RIGLLIPLSGPAGLWGPSCEACAELAAAEINAAGGILGREVELVLIDAGGPPAEVAAAARRLVDDGaVDAIVGmHT-SAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 105 TQPASD--------IYedegilmiTPAATAPELTARGYqlilrTTGL-DSDQGPTAAKYILEKVKPQRIAIVHDKQQYGE 175
Cdd:cd06358 80 RQALANavggrvpyVY--------TPLYEGGERTPGVY-----AIGEtPEEQLRPALRWLADERRVRRWFLVGNDYVWPR 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1447699773 176 GLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVY 221
Cdd:cd06358 147 ASHAAARRYIARLGGEVVGERFVPLGEDDFERVLARIRASRPDAVL 192
|
|
| PBP1_ABC_ligand_binding-like |
cd06337 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-342 |
3.33e-06 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380560 [Multi-domain] Cd Length: 354 Bit Score: 48.45 E-value: 3.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 27 KVAVVGAMSGPVAQYGDQEfTGAEQAVADINAKGGIKGN----KLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLC 101
Cdd:cd06337 1 KIGRVSPLTGPLAAFGEAD-PWVLEQIREAFADGGIKVGgkkyPVEIVVRDSQSDPNRAGEAARDLIlRDKVDLMLASGT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 102 SSSTQPASDIYEDEGILMITPAAT-APELTARG--YQLILRTTGLDSDQGPTAAKYIL---EKVK-PQRIAIVHDKQQYG 174
Cdd:cd06337 80 PDTVNPVADQCEANGVPCISTDAPwQAWFFGRGgdPAKGFKWTFHFFWGLEDIAANFLgmwDQVPtNKVVGLLWPNDPDG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 175 EGLARAVQDGLKKGNANVV---FFdgiTAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQ------- 244
Cdd:cd06337 160 TAFADAFLGLPAAAGYTLVdpgRF---PPGTDDFSSIINAFKKAGVEIVTGVMIPPDFATFWRQAAQQGFKPKvvtigka 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699773 245 FMGPEGVAnvslsnIAGESAEGLLVtkpknydQV---PAN-----------KPIVDAIKAKKQDPsgafvWT-----TYA 305
Cdd:cd06337 237 LLFPSAVA------ALGDLGDGLST-------EVwwsPAHpfkssltgqtaAELADAYEKATGKQ-----WTqplgyAHA 298
|
330 340 350
....*....|....*....|....*....|....*....
gi 1447699773 306 ALQSLQAGLNQSDDPAE--IAKYLKANSVDTVMGPLTWD 342
Cdd:cd06337 299 LFEVAVDALKRAGSPDDeaVRAALADTDLDTIVGPVDFT 337
|
|
| Fe-ADH |
pfam00465 |
Iron-containing alcohol dehydrogenase; |
147-220 |
1.59e-04 |
|
Iron-containing alcohol dehydrogenase;
Pssm-ID: 425696 [Multi-domain] Cd Length: 362 Bit Score: 43.36 E-value: 1.59e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1447699773 147 QGPTAAKYILEKVKP--QRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITaGEKDFSTL---VARLKKENIDFV 220
Cdd:pfam00465 6 FGAGALAELGEELKRlgARALIVTDPGSLKSGLLDKVLASLEEAGIEVVVFDGVE-PEPTLEEVdeaAALAREAGADVI 83
|
|
|