|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
1-300 |
0e+00 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 570.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHL 80
Cdd:PRK10913 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAHI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
Cdd:PRK10913 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 161 IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFL 240
Cdd:PRK10913 161 IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK10913 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
15-295 |
9.01e-104 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 303.96 E-value: 9.01e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 15 PMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPawqeggSMAHLLGTDDVGRDVLSRL 94
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPP------SAAHWLGTDQLGRDVLSRL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 95 MYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALP 174
Cdd:COG1173 75 LYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:COG1173 155 GYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTM 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 15833676 255 LSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
Cdd:COG1173 235 LSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
44-295 |
1.33e-69 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 216.48 E-value: 1.33e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 44 FIAIFANWIAPYNPAEQFRDALLAPPAWQeggsmaHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIA 123
Cdd:TIGR02790 13 LLAIFAPWIAPHDPLAQNLPMRLLGPSME------YWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 124 GYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGA 203
Cdd:TIGR02790 87 GYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASH 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 204 MRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAF 283
Cdd:TIGR02790 167 WQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAF 246
|
250
....*....|..
gi 15833676 284 NLMGDGLRDALD 295
Cdd:TIGR02790 247 NLLGDALRDHLG 258
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-280 |
3.32e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 69.61 E-value: 3.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 114 IMGVILGLIAGYFGGLVDNIIMRVVDIMLA--------LPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVL 185
Cdd:cd06261 17 VLGLLLGIILARKRGKLDRLLRRIIDLLLSlpslvlglLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 186 VEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAqPPTPEWGTMLsdVLQFAQSA 265
Cdd:cd06261 97 ESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTGLLL--IFAILFPG 173
|
170
....*....|....*
gi 15833676 266 WWVVTFPGLAILLTV 280
Cdd:cd06261 174 DLGVAAAVALILLLL 188
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-300 |
1.57e-13 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 67.71 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 116 GVILGLIAG-YFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSI----GNAALALTFVALPHYVRLTRAAVLVEVNR 190
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSIlghgILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 191 DYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFL----GMGAQPPTPEWGTMLSdvlqfaqsaw 266
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP---------- 150
|
170 180 190
....*....|....*....|....*....|....
gi 15833676 267 wVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:pfam00528 151 -EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
1-300 |
0e+00 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 570.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHL 80
Cdd:PRK10913 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAHI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
Cdd:PRK10913 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 161 IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFL 240
Cdd:PRK10913 161 IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK10913 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
15-295 |
9.01e-104 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 303.96 E-value: 9.01e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 15 PMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPawqeggSMAHLLGTDDVGRDVLSRL 94
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPP------SAAHWLGTDQLGRDVLSRL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 95 MYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALP 174
Cdd:COG1173 75 LYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:COG1173 155 GYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTM 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 15833676 255 LSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
Cdd:COG1173 235 LSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
17-299 |
1.80e-83 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 253.20 E-value: 1.80e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 17 TPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRLMY 96
Cdd:COG4171 14 SPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWDDNGDVSFFLGTDDLGRDILSRLLY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 97 GARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHY 176
Cdd:COG4171 94 GARYTFGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQF 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 177 VRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLS 256
Cdd:COG4171 174 IHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLG 253
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 15833676 257 DVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK 299
Cdd:COG4171 254 DSLELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALNKGVE 296
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
44-295 |
1.33e-69 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 216.48 E-value: 1.33e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 44 FIAIFANWIAPYNPAEQFRDALLAPPAWQeggsmaHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIA 123
Cdd:TIGR02790 13 LLAIFAPWIAPHDPLAQNLPMRLLGPSME------YWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 124 GYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGA 203
Cdd:TIGR02790 87 GYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASH 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 204 MRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAF 283
Cdd:TIGR02790 167 WQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAF 246
|
250
....*....|..
gi 15833676 284 NLMGDGLRDALD 295
Cdd:TIGR02790 247 NLLGDALRDHLG 258
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
43-298 |
7.19e-68 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 213.53 E-value: 7.19e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 43 LFIAIFANWIAPYNPAEQFRDALLAPPawqeggSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLI 122
Cdd:PRK09881 44 LLMMIFSPWLATHDPNAIDLTARLLPP------SAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 123 AGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAG 202
Cdd:PRK09881 118 SGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGAS 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 203 AMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLA 282
Cdd:PRK09881 198 RWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVG 277
|
250
....*....|....*.
gi 15833676 283 FNLMGDGLRDALDPKL 298
Cdd:PRK09881 278 FNLFGDGIRDLLDPKA 293
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
17-300 |
2.61e-65 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 206.89 E-value: 2.61e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 17 TPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFR-DALLAPPawqeggSMAHLLGTDDVGRDVLSRLM 95
Cdd:PRK15082 23 TPWHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAENYFDyDALNAGP------SLQHWFGVDSLGRDIFSRIL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 96 YGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPH 175
Cdd:PRK15082 97 VGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 176 YVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTML 255
Cdd:PRK15082 177 FARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAML 256
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 15833676 256 SDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK15082 257 NEARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIKG 301
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
15-295 |
4.78e-58 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 187.99 E-value: 4.78e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 15 PMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRL 94
Cdd:PRK15111 12 PPGTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 95 MYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALP 174
Cdd:PRK15111 92 LSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLP 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:PRK15111 172 RMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAM 251
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 15833676 255 LSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
Cdd:PRK15111 252 LGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
45-299 |
1.30e-57 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 186.03 E-value: 1.30e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 45 IAIFANWIAPYNPAEQFRDALLAPPAWQeggsmaHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAG 124
Cdd:PRK10417 19 IALTSQWWLPYDPQAIDLPSRLLSPDAQ------HWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 125 YFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALAltfVALPH---YVRLTRAAVLVEVNRDYVTASRVAGA 201
Cdd:PRK10417 93 LLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIA---IALSHwawYARMVRSLVISLRQREFVLAARLSGA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 202 GAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVL 281
Cdd:PRK10417 170 GHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFISVM 249
|
250
....*....|....*...
gi 15833676 282 AFNLMGDGLRDALDPKLK 299
Cdd:PRK10417 250 AFNLLGDALRDHLDPHLV 267
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
54-297 |
6.31e-39 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 139.52 E-value: 6.31e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 54 PYNPAEQFRDALLAPPAwqeGGSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNI 133
Cdd:COG4239 99 PYSYDTINYDLPSPAPS---PPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 134 IMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTF---VALPHYVrltRAAVLVEVNRDYVTASRVAGAGAMRQMFIN 210
Cdd:COG4239 176 FQRFIEIWSSMPELYLLIILSSIFQPSFWLLLGILLLfgwMGLVGVV---RAEFLRARNLEYVRAARALGVSDRRIMFRH 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 211 IFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLS---DVLQfaqsAWWVV--TFPGLAILLTVLAFnl 285
Cdd:COG4239 253 ILPNAMVATLTFLPFILSGAITTLTSLDFLGFGLPPGSPSLGELLAqgkNNLQ----APWLGlsAFVVLALMLSLLVF-- 326
|
250
....*....|..
gi 15833676 286 MGDGLRDALDPK 297
Cdd:COG4239 327 IGEAVRDAFDPR 338
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
26-297 |
6.44e-36 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 130.73 E-value: 6.44e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 26 FKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGgsmaHLLGTDDVGRDVLSRLMYGARLSLLVG 105
Cdd:PRK15406 33 FMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMESG----HYFGTDSSGRDLLVRVAIGGRISLMVG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 106 CLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVL 185
Cdd:PRK15406 109 VAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 186 VEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSA 265
Cdd:PRK15406 189 SLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVS 268
|
250 260 270
....*....|....*....|....*....|..
gi 15833676 266 WWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
Cdd:PRK15406 269 PWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
67-296 |
1.28e-19 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 87.35 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 67 APPAWQeggsmaHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPS 146
Cdd:PRK15021 115 SPPSRQ------NWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPT 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 147 LLLALVLVAIFGPSIGnAALALTFV-ALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASL 225
Cdd:PRK15021 189 LFLIILLSSVVQPNFW-WLLAITVLfGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPF 267
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15833676 226 GFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVT-FPGLAILLTVLAFnlMGDGLRDALDP 296
Cdd:PRK15021 268 ILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITaFLSVAILLSLLIF--IGEAVRDAFDP 337
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-280 |
3.32e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 69.61 E-value: 3.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 114 IMGVILGLIAGYFGGLVDNIIMRVVDIMLA--------LPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVL 185
Cdd:cd06261 17 VLGLLLGIILARKRGKLDRLLRRIIDLLLSlpslvlglLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 186 VEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAqPPTPEWGTMLsdVLQFAQSA 265
Cdd:cd06261 97 ESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTGLLL--IFAILFPG 173
|
170
....*....|....*
gi 15833676 266 WWVVTFPGLAILLTV 280
Cdd:cd06261 174 DLGVAAAVALILLLL 188
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-300 |
1.57e-13 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 67.71 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 116 GVILGLIAG-YFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSI----GNAALALTFVALPHYVRLTRAAVLVEVNR 190
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSIlghgILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 191 DYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFL----GMGAQPPTPEWGTMLSdvlqfaqsaw 266
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP---------- 150
|
170 180 190
....*....|....*....|....*....|....
gi 15833676 267 wVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:pfam00528 151 -EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
17-69 |
6.99e-08 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 48.18 E-value: 6.99e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 15833676 17 TPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPP 69
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
165-231 |
1.68e-05 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 45.44 E-value: 1.68e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15833676 165 ALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAI 231
Cdd:COG0601 185 ALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLL 251
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
165-231 |
4.22e-03 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 38.07 E-value: 4.22e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15833676 165 ALALTFVALPHYVRlTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAI 231
Cdd:CHL00187 141 LLAMIFVSFPFVVR-TIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAI 206
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
166-278 |
9.49e-03 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 36.61 E-value: 9.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833676 166 LALTFVALPHYVRLTRAAVlVEVNRDYVTASRVAGAGAMrQMFINI-FPNCLAPLIVQASLGFSNAILDMAALGFLGMGA 244
Cdd:TIGR01581 108 LAQTFVASPYYVRVARSTF-KSVDPRYEDVARSLGAGPL-ETFRKItLPMARPGLLAGLVLAWARALGEFGATLMFAGSI 185
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 15833676 245 QP-----PTPEWGTMLSDVLQFA-QSAWWVVTFPGLAILL 278
Cdd:TIGR01581 186 QGktrtlPLAIYLNIQSDNIEAAvASALLLLVIAFLLLLV 225
|
|
|