|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15346 |
PRK15346 |
EscC/YscC/HrcC family type III secretion system outer membrane ring protein; |
1-511 |
0e+00 |
|
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
Pssm-ID: 237950 [Multi-domain] Cd Length: 499 Bit Score: 774.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 1 MKKISFFIFTALFCCSAQAAPSSLEKRlgKSEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVL 80
Cdd:PRK15346 1 MKKLLILIFLFLLNTAKFAASKSIPWQ--GNPFFIYSRGMPLAEVLHDLGANYGIPVVISPEINDTFSGKIRDGPPVKIL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 81 EKLSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYIT 160
Cdd:PRK15346 79 NELARRYHLTWYYDGNTLYVYKASEIKRQVITPTYLSAGRLIKYLQSQGILNGKSCEVKAITGTNALEVSGVPECIERVT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 161 SLSESLDKEAQSKAKNKDVVKVFKLNYASATDITYKYRDQNVVVPGVVSILKTMASNGSLPSTGKGAVERSGNLFDNSVt 240
Cdd:PRK15346 159 QLAKVLDEQAQKRKQNKETVKVFPLKYASATDTTYQYRDQNVVVPGVVSVLREMAQGNSLPLPGSNAVEGSPASQALPV- 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 241 ISADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANIS 320
Cdd:PRK15346 238 FSADPRQNAVIVRDRAANMAIYRSLITQLDQRPQMIEISVSIIDVDAGDINQLGIDWSASASLGGGKISFNSGFADGNAS 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 321 --SSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKVSGEKVASLESITSGTLLRVTPRILDDS 398
Cdd:PRK15346 318 gfSTVISNTGNFMVRLNALEKNSKAKILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESITTGSLLRVTPRLIDDN 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 399 SNsltgkrrERVRLLLDIQDGNQSTNQSnaqdASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDI 478
Cdd:PRK15346 398 GT-------QKVMLNLNIQDGQQSATQS----ETDPLPEVQNSEIATQATLKAGQSLLLGGFIQDKQIESQNKIPLLGDI 466
|
490 500 510
....*....|....*....|....*....|...
gi 15833829 479 PVIGSLFSSTVKQKHSVVRLFLIKATPIKSASS 511
Cdd:PRK15346 467 PLIGGLFRSTDKQSHSVVRLFLIKAEPVNNGIS 499
|
|
| type_III_yscC |
TIGR02516 |
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ... |
32-508 |
0e+00 |
|
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274174 [Multi-domain] Cd Length: 462 Bit Score: 656.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 32 EYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHLTWYYDENILYIYKTNEISRSII 111
Cdd:TIGR02516 1 EYFYVAKQESLRALLADFAANYGIPVVVSSKVNKKVTGKFEDDNPEKFLQRLALLYGLTWYYDGNALYIYPNSEIARAVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 112 TPTYLDIDSLLKYLSDtISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSKAKNKDVVKVFKLNYASAT 191
Cdd:TIGR02516 81 SPRPLSANELKKALRR-SGLYDPRFPWRGDPEEGTVYVSGPPAYIDLVRNAATALEKQDQGRAGNRQVVKVFPLKYASAS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 192 DITYKYRDQNVVVPGVVSILKTMASNgslpstgkGAVERSGNLFDNSVTISADPRLNAVVVKDREITMDIYQQLISELDI 271
Cdd:TIGR02516 160 DRTYNYRDQKVTIPGVATILRRLLSG--------GRQGAGGGRASASPKISADPRTNAVLIRDRPERMAIYEQLIQQLDV 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 272 EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFN-SSTAQANI--SSSVISNASNFMIRVNALQQNSKAKILSQ 348
Cdd:TIGR02516 232 PPRLIEISAWIIDIDASDLSQLGVDWQATLGAGDRQTGFNvSAGAGLGAtgSSIVTSDGDYFMARVNALEQTGKAKIVSR 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 349 PSIITLNNMQAILDKNVTFYTKVSGEKVASLESITSGTLLRVTPRILDDSSNSLtgkrreRVRLLLDIQDGNQSTnqsNA 428
Cdd:TIGR02516 312 PSVLTLENVQAVLDNNRTFYVKVSGERVADLESVTAGTSLRVTPRVIGDEGAQR------QIKLNVDIEDGQQKT---DG 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 429 QDASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATPIKS 508
Cdd:TIGR02516 383 TSTVDALPEIKRTEINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIVRD 462
|
|
| PulD |
COG1450 |
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ... |
174-512 |
8.84e-68 |
|
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 441059 [Multi-domain] Cd Length: 333 Bit Score: 221.33 E-value: 8.84e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 174 AKNKDVVKVFKLNYASATDitykyrdqnvvvpgVVSILKTMASNGSlpstgkgaversgnlfdnSVTISADPRLNAVVVK 253
Cdd:COG1450 11 FRDADLRDVLRALYADAED--------------LAKVLRSLLGGAA------------------GVSVVADPRTNSLIVR 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 254 DREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTiAFNSSTAQANISSSV---------I 324
Cdd:COG1450 59 ATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSALGGNGGGV-NFGGTGSLGSLAAAGslggglnlgL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 325 SNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVS-----GEKVASLESITSGTLLRVTPRILDD 397
Cdd:COG1450 138 LGGGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKvgQTVPYVTGSTttsstGNPTTTIEYVDVGITLKVTPQINED 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 398 ssnsltgkrrERVRLLLDIQdgnQSTNQSNAQDASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSD 477
Cdd:COG1450 218 ----------GTVTLDINPE---VSSVTGSTTGGGNGLPTINKREISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGD 284
|
330 340 350
....*....|....*....|....*....|....*
gi 15833829 478 IPVIGSLFSSTVKQKHSVVRLFLIKATPIKSASSE 512
Cdd:COG1450 285 IPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDA 319
|
|
| Secretin |
pfam00263 |
Bacterial type II and III secretion system protein; |
336-504 |
6.36e-37 |
|
Bacterial type II and III secretion system protein;
Pssm-ID: 459738 [Multi-domain] Cd Length: 159 Bit Score: 133.80 E-value: 6.36e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 336 ALQQNSKAKILSQPSIITLNNMQAILDKNVTFY----TKVSGEKVASLESITSGTLLRVTPRILDDssnsltgkrrERVR 411
Cdd:pfam00263 1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPvpttSTTGGTTTTTVEFKDAGLSLKVTPQVTPD----------GTIT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 412 LLLDIQDGNQSTNQSNaqdassTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQ 491
Cdd:pfam00263 71 LKINPEVSSPDGNGGN------GVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKS 144
|
170
....*....|...
gi 15833829 492 KHSVVRLFLIKAT 504
Cdd:pfam00263 145 KEKTELLIFITPR 157
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15346 |
PRK15346 |
EscC/YscC/HrcC family type III secretion system outer membrane ring protein; |
1-511 |
0e+00 |
|
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
Pssm-ID: 237950 [Multi-domain] Cd Length: 499 Bit Score: 774.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 1 MKKISFFIFTALFCCSAQAAPSSLEKRlgKSEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVL 80
Cdd:PRK15346 1 MKKLLILIFLFLLNTAKFAASKSIPWQ--GNPFFIYSRGMPLAEVLHDLGANYGIPVVISPEINDTFSGKIRDGPPVKIL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 81 EKLSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYIT 160
Cdd:PRK15346 79 NELARRYHLTWYYDGNTLYVYKASEIKRQVITPTYLSAGRLIKYLQSQGILNGKSCEVKAITGTNALEVSGVPECIERVT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 161 SLSESLDKEAQSKAKNKDVVKVFKLNYASATDITYKYRDQNVVVPGVVSILKTMASNGSLPSTGKGAVERSGNLFDNSVt 240
Cdd:PRK15346 159 QLAKVLDEQAQKRKQNKETVKVFPLKYASATDTTYQYRDQNVVVPGVVSVLREMAQGNSLPLPGSNAVEGSPASQALPV- 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 241 ISADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANIS 320
Cdd:PRK15346 238 FSADPRQNAVIVRDRAANMAIYRSLITQLDQRPQMIEISVSIIDVDAGDINQLGIDWSASASLGGGKISFNSGFADGNAS 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 321 --SSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKVSGEKVASLESITSGTLLRVTPRILDDS 398
Cdd:PRK15346 318 gfSTVISNTGNFMVRLNALEKNSKAKILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESITTGSLLRVTPRLIDDN 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 399 SNsltgkrrERVRLLLDIQDGNQSTNQSnaqdASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDI 478
Cdd:PRK15346 398 GT-------QKVMLNLNIQDGQQSATQS----ETDPLPEVQNSEIATQATLKAGQSLLLGGFIQDKQIESQNKIPLLGDI 466
|
490 500 510
....*....|....*....|....*....|...
gi 15833829 479 PVIGSLFSSTVKQKHSVVRLFLIKATPIKSASS 511
Cdd:PRK15346 467 PLIGGLFRSTDKQSHSVVRLFLIKAEPVNNGIS 499
|
|
| type_III_yscC |
TIGR02516 |
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ... |
32-508 |
0e+00 |
|
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274174 [Multi-domain] Cd Length: 462 Bit Score: 656.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 32 EYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHLTWYYDENILYIYKTNEISRSII 111
Cdd:TIGR02516 1 EYFYVAKQESLRALLADFAANYGIPVVVSSKVNKKVTGKFEDDNPEKFLQRLALLYGLTWYYDGNALYIYPNSEIARAVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 112 TPTYLDIDSLLKYLSDtISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSKAKNKDVVKVFKLNYASAT 191
Cdd:TIGR02516 81 SPRPLSANELKKALRR-SGLYDPRFPWRGDPEEGTVYVSGPPAYIDLVRNAATALEKQDQGRAGNRQVVKVFPLKYASAS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 192 DITYKYRDQNVVVPGVVSILKTMASNgslpstgkGAVERSGNLFDNSVTISADPRLNAVVVKDREITMDIYQQLISELDI 271
Cdd:TIGR02516 160 DRTYNYRDQKVTIPGVATILRRLLSG--------GRQGAGGGRASASPKISADPRTNAVLIRDRPERMAIYEQLIQQLDV 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 272 EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFN-SSTAQANI--SSSVISNASNFMIRVNALQQNSKAKILSQ 348
Cdd:TIGR02516 232 PPRLIEISAWIIDIDASDLSQLGVDWQATLGAGDRQTGFNvSAGAGLGAtgSSIVTSDGDYFMARVNALEQTGKAKIVSR 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 349 PSIITLNNMQAILDKNVTFYTKVSGEKVASLESITSGTLLRVTPRILDDSSNSLtgkrreRVRLLLDIQDGNQSTnqsNA 428
Cdd:TIGR02516 312 PSVLTLENVQAVLDNNRTFYVKVSGERVADLESVTAGTSLRVTPRVIGDEGAQR------QIKLNVDIEDGQQKT---DG 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 429 QDASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATPIKS 508
Cdd:TIGR02516 383 TSTVDALPEIKRTEINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIVRD 462
|
|
| PRK15339 |
PRK15339 |
EscC/YscC/HrcC family type III secretion system outer membrane ring protein; |
4-510 |
7.55e-81 |
|
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
Pssm-ID: 237948 [Multi-domain] Cd Length: 559 Bit Score: 262.01 E-value: 7.55e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 4 ISFFIFTALFCCSAQAAPSSLEKRLGKSeyfIITKSSPVRAILNDFAANYSIPVFISS-SVNDDFSGEIKNEKPVKVLEK 82
Cdd:PRK15339 6 IARVLLCAALVLVVGALSSEKIPATGSG---YVAKKDSLRSFFDAMSSQLKKPVIVSKlAARKQISGNFDLHDPNALLEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 83 LSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKN---SCNVRKITTFnsieVRGVPECIKYI 159
Cdd:PRK15339 83 LSLQLGLIWYFDGQAIYIYDASEMRNAVVSLRNVSLNEFNNFLKRSGLYNKRyplRGDNRKGTFY----VSGPPVYVDLV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 160 TSLSESLDKEAQSKAKNKDVVKVFKLNYASATDITYKYRDQNVVVPGVVSILKTMASNGSLPS--------------TGK 225
Cdd:PRK15339 159 VNAATLMDKQNDGIELGRQKIGVIRLNNTFVGDRTYNLRGQKIVIPGIATVIERLLNGEEQPSgrqasseppamppfSAN 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 226 GAVERSGNLFD--------------NSVTISADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQ 291
Cdd:PRK15339 239 GEKGKAANYAGgmslqealkqnaaaGDIKIIAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIIDLDKSDLE 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 292 QLGVNWSGTLNAGqgtiafNSSTAQANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV 371
Cdd:PRK15339 319 QLGVNWSGSITIG------DKLGVSLNQSSISTLDGSRFIAAVMALEQKKKANVVSRPVVLTQENIPAIFDNNRTFYTKL 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 372 SGEKVASLESITSGTLLRVTPRILDDSsnsltgkrreRVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTTEATLSA 451
Cdd:PRK15339 393 VGERNVALEHVTYGTMISVLPRFSADG----------QIEMSLDIEDGNEKTPQSDTTTSVDALPEVGRTLISTIARVPQ 462
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 15833829 452 GESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATPIKSAS 510
Cdd:PRK15339 463 GKSLLIGGYTRDANTDEVQSIPFLGSLPLIGSLFRYSSKNKSNIVRVFLIEPREIVEPL 521
|
|
| PulD |
COG1450 |
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ... |
174-512 |
8.84e-68 |
|
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 441059 [Multi-domain] Cd Length: 333 Bit Score: 221.33 E-value: 8.84e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 174 AKNKDVVKVFKLNYASATDitykyrdqnvvvpgVVSILKTMASNGSlpstgkgaversgnlfdnSVTISADPRLNAVVVK 253
Cdd:COG1450 11 FRDADLRDVLRALYADAED--------------LAKVLRSLLGGAA------------------GVSVVADPRTNSLIVR 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 254 DREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTiAFNSSTAQANISSSV---------I 324
Cdd:COG1450 59 ATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSALGGNGGGV-NFGGTGSLGSLAAAGslggglnlgL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 325 SNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVS-----GEKVASLESITSGTLLRVTPRILDD 397
Cdd:COG1450 138 LGGGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKvgQTVPYVTGSTttsstGNPTTTIEYVDVGITLKVTPQINED 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 398 ssnsltgkrrERVRLLLDIQdgnQSTNQSNAQDASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSD 477
Cdd:COG1450 218 ----------GTVTLDINPE---VSSVTGSTTGGGNGLPTINKREISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGD 284
|
330 340 350
....*....|....*....|....*....|....*
gi 15833829 478 IPVIGSLFSSTVKQKHSVVRLFLIKATPIKSASSE 512
Cdd:COG1450 285 IPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDA 319
|
|
| Secretin |
pfam00263 |
Bacterial type II and III secretion system protein; |
336-504 |
6.36e-37 |
|
Bacterial type II and III secretion system protein;
Pssm-ID: 459738 [Multi-domain] Cd Length: 159 Bit Score: 133.80 E-value: 6.36e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 336 ALQQNSKAKILSQPSIITLNNMQAILDKNVTFY----TKVSGEKVASLESITSGTLLRVTPRILDDssnsltgkrrERVR 411
Cdd:pfam00263 1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPvpttSTTGGTTTTTVEFKDAGLSLKVTPQVTPD----------GTIT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 412 LLLDIQDGNQSTNQSNaqdassTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQ 491
Cdd:pfam00263 71 LKINPEVSSPDGNGGN------GVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKS 144
|
170
....*....|...
gi 15833829 492 KHSVVRLFLIKAT 504
Cdd:pfam00263 145 KEKTELLIFITPR 157
|
|
| HofQ |
COG4796 |
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ... |
164-492 |
1.27e-33 |
|
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443824 [Multi-domain] Cd Length: 570 Bit Score: 134.21 E-value: 1.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 164 ESLDKEAQSKAKNKD--VVKVFKLNYASATDItykyrdqnvvvpgvVSILKtmASNGSLPStgkgavERsGNlfdnsvtI 241
Cdd:COG4796 240 EKLELEAKQQIEELEplRTEYIQLNYAKASDL--------------AKLLK--GQRGSLLS------ER-GS-------V 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 242 SADPRLNAVVVKD-----REItmdiyQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQ 316
Cdd:COG4796 290 TVDERTNTLIVRDtpsklEEI-----RRLIAKLDIPVRQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGGSL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 317 ANISSSVISNASNFMI--------------------------RVNALQQNSKAKILSQPSIITLNNMQAildknvtfYTK 370
Cdd:COG4796 365 NGTTAGTPLLPDGLNVnlpaanpagslgltlaklgggrlldlELSALEAEGKGEIISSPRVITADQQEA--------SIE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 371 vSGEKVASLESITSGT---------L-LRVTPRILDDSsnsltgkrreRVRLLLDIqdgnqsTNQSNAQDASSTLPEVQN 440
Cdd:COG4796 437 -QGTEIPYQESSSSGAtsvefkeavLsLEVTPQITPDG----------RIILDLDV------SKDSPGETVAGGVPAIDT 499
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 15833829 441 SEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQK 492
Cdd:COG4796 500 KEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTD 551
|
|
| type_II_gspD |
TIGR02517 |
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ... |
145-492 |
2.81e-33 |
|
type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274175 [Multi-domain] Cd Length: 594 Bit Score: 133.28 E-value: 2.81e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 145 NSIEVRGVPECIKYITSLSESLDKEAQSKAKnkdvVKVFKLNYASATDITYKYR----DQNVVVPGVVSILKTMASNGSL 220
Cdd:TIGR02517 205 NILIRAGSPEALERIKKLISQLDVPASEGGN----VRVYYLRNADAEELAKTLQgvfgGGGNEPGSSSSPGLGGAVNPGG 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 221 PSTGKGAVERSGNlfdnSVTISADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNW--- 297
Cdd:TIGR02517 281 SQSAQAASSASGG----SVSGSADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWlia 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 298 -----------SGTLNAGQGT---------IAFNSSTAQANISSSV--ISNASNFMIRVNALQQNSKAKILSQPSIITLN 355
Cdd:TIGR02517 357 gtgggvnfstgSPNSGSLLGAsasaislgsAGIGLLVTSSSTTSGVggTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLD 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 356 NMQA--ILDKNVTFYTK--------VSGEKVASLESITSGTLLRVTPRILDDssnsltgkrrERVRLLLDIQDGNQSTNQ 425
Cdd:TIGR02517 437 NQEAeiNVGQEVPVLTGsyntgtggTNANPFNTYQRKDVGIKLKVTPQINEG----------GTVRLEIYQEVSSVAPTT 506
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15833829 426 SNAQDASSTLpevQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQK 492
Cdd:TIGR02517 507 VGSAASGPTF---NKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTER 570
|
|
| pilus_MshL |
TIGR02519 |
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ... |
273-504 |
6.30e-29 |
|
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]
Pssm-ID: 274176 [Multi-domain] Cd Length: 290 Bit Score: 115.94 E-value: 6.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 273 QRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTI----AFNSSTAQANISSSVISNASNFMIR------------VNA 336
Cdd:TIGR02519 34 HRQVLIEAKILEVTLSDNHQQGIDWSNFNGSGLARYkalgAANSNDSSGNQFSSGLGFLDNIGLPtgvnsgfgfdsiINF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 337 LQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVS-------GEKVAS----LESITSGTLLRVTPRILDDssnslt 403
Cdd:TIGR02519 114 LATFGDTKVLSNPKVMALNNQPAVISvgDNIRYVTEESstgttggTTSTASsdtrVDSVFSGIVLGVTPQISDD------ 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 404 GKRRERVR-LLLDIQDGNQSTNQsNAQDASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIG 482
Cdd:TIGR02519 188 GKVILNVHpSISEVKPQSIDLNP-VGNGAEVALPEISVKEMSSVLRVKDGDTVVLGGLIDKKKSNTKTGLPFLGDIPGLG 266
|
250 260
....*....|....*....|..
gi 15833829 483 SLFSSTVKQKHSVVRLFLIKAT 504
Cdd:TIGR02519 267 YLFGYKSKSKKKTELVIIIRPS 288
|
|
| CpaC |
COG4964 |
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ... |
263-492 |
6.10e-27 |
|
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443990 [Multi-domain] Cd Length: 456 Bit Score: 113.43 E-value: 6.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 263 QQLISELDIE-QRQIEISVSIIDVDANDLQQLGVNWSGTLNAG--------QGTIAFNSSTAQANISSSVISNASNFMIR 333
Cdd:COG4964 163 GKVINLLTVGgPQQVMLKVRVAEVSRSVLKQLGINWSGLGSSGgfsfglltGGLLSGLLGGATAGAFSGFGFGNASISAT 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 334 VNALQQNSKAKILSQPSIITLNNMQAildknvTF-------YTKVSGEKVASLESITSGTLLRVTPRILDDssnsltgkr 406
Cdd:COG4964 243 LDALEQNGLARVLAEPNLTALSGETA------SFlaggefpIPVAQGDGTITVEYKEFGVSLNFTPTVLSN--------- 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 407 rERVRLLL-----DIqdgnqsTNQSNAQDASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVI 481
Cdd:COG4964 308 -GRISLKVapevsEL------DPSNAVTLNGITIPGLTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPIL 380
|
250
....*....|.
gi 15833829 482 GSLFSSTVKQK 492
Cdd:COG4964 381 GALFRSRSFQR 391
|
|
| hofQ |
PRK13568 |
DNA uptake porin HofQ; |
238-505 |
1.05e-25 |
|
DNA uptake porin HofQ;
Pssm-ID: 237430 [Multi-domain] Cd Length: 381 Bit Score: 108.67 E-value: 1.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 238 SVTisADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWsGTLNAGQGTIAFNssTAQA 317
Cdd:PRK13568 114 SVT--ADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVTISSESLQELGVRW-GMGEGKQGNTALR--INDF 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 318 NISSSVISNASN--FMI-RVN---------ALQQNSKAKILSQPSIITLNNMQAILDKNVTF-YTKVSGEKVASLESITS 384
Cdd:PRK13568 189 NVNLPLPNPAASagFHLaRLGgrlldlelsALEQENQVDIIASPRLFTSHQQTASIKQGTEIpYTVSSGKSGSTSIEFKE 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 385 GTL-LRVTPRILddssnsltgkRRERVRLLLDIqdgnqSTN---QSNAQDASSTLPeVQNSEMTTEATLSAGESLLLGGF 460
Cdd:PRK13568 269 AVLgMEVTPKIL----------RNGRITLKLKI-----SQNmpgRTIKRGEGEMLA-IDKQEIQTQVTVKDGETIVLGGI 332
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 15833829 461 IQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSvvRLFLIKATP 505
Cdd:PRK13568 333 FQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSR--RELVIFITP 375
|
|
| IV |
PHA00019 |
phage assembly protein |
145-507 |
1.49e-24 |
|
phage assembly protein
Pssm-ID: 222772 [Multi-domain] Cd Length: 428 Bit Score: 106.05 E-value: 1.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 145 NSIEVRGVPECIKYITSLSESLDKE--------AQSKAKNKDVVKVFKLNYASATDitykyrdqnvVVPGVVSILKTMAS 216
Cdd:PHA00019 90 PAVVIKQNPNQEDYADDLRDSRDDVfydnsvpsGAPEVPNDLIVRTFNINNVRASD----------LLPLVKIFVKSNGA 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 217 NGSlpstgkgaversgnlfdnSVTIsaDPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDV---DANDLQ-Q 292
Cdd:PHA00019 160 PGG------------------SVTD--LPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFETslgDGVDLSfA 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 293 LGVNWSGTLNAGQGTIAFNSSTAQANISSSvISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYT- 369
Cdd:PHA00019 220 AGLASGGKVAGGFNTARLTTVLSSAGGSFG-IFNGNVLGLSVKALENSSNSRVLSRPRILTLSGQSGYISvgQNVPFVTg 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 370 KVSGEK------VASLESITSGTLLRVTPRILDDSSnsltgkrrervrLLLDIqdgNQSTNQSNAQDASSTLPEVQNSEM 443
Cdd:PHA00019 299 RVTGEAanvnnpFQTIERKDVGVSLEVTPVVMGDGQ------------LVLDI---DTKADSLSDSTIASDIITNQRSLQ 363
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15833829 444 TTEAtLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATPIK 507
Cdd:PHA00019 364 TTVQ-VKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVIK 426
|
|
| hofQ |
PRK10560 |
outer membrane porin HofQ; Provisional |
240-492 |
2.15e-22 |
|
outer membrane porin HofQ; Provisional
Pssm-ID: 182549 [Multi-domain] Cd Length: 386 Bit Score: 99.12 E-value: 2.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 240 TISADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSgTLNAGQGTIAFNSSTAQANI 319
Cdd:PRK10560 119 SMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAHIVTINEKSLRELGVKWT-LADAQQAGGVGQVTTLGSDL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 320 SSSVISNASNFMI-RVN---------ALQQNSKAKILSQPSIITlNNMQ--AILDKNVTFYTKVSGEKVASLESITSGTL 387
Cdd:PRK10560 198 SVATATTRVGFNIgRINgrlldlelsALEQKQQLDIIASPRLLA-SHLQpaSIKQGSEIPYQVSSGESGATSVEFKEAVL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 388 -LRVTPRILDDSsnsltgkrreRVRLLLDIqdgNQSTNQSNAQDASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKES 466
Cdd:PRK10560 277 gMEVTPTVLQKG----------RIRLKLHI---SQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNK 343
|
250 260
....*....|....*....|....*.
gi 15833829 467 SSKDGIPLLSDIPVIGSLFSSTVKQK 492
Cdd:PRK10560 344 SGQDSVPLLGDIPWLGQLFRHDGKED 369
|
|
| Secretin_N |
pfam03958 |
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ... |
180-275 |
1.49e-09 |
|
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.
Pssm-ID: 461109 [Multi-domain] Cd Length: 68 Bit Score: 54.14 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15833829 180 VKVFKLNYASATDitykyrdqnvvvpgVVSILKTMASNGSLPstgkgaversgnlfDNSVTISADPRLNAVVVKDREITM 259
Cdd:pfam03958 1 TRVIPLKYASAED--------------LASALRSLLGGSGLL--------------SKRGSVVADPRTNSLIVSGPPEYV 52
|
90
....*....|....*.
gi 15833829 260 DIYQQLISELDIEQRQ 275
Cdd:pfam03958 53 ELVRQLIKQLDVPRAQ 68
|
|
| |
