|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
2-523 |
0e+00 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 899.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 2 LSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGEsLTDPNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAK 81
Cdd:TIGR02005 1 MNAIQRFGGAMFVPVLLFAFAGIVVGFAILFKNPDIMGS-LADQNTFWYKFWSVIEEGGWTVFRQMPLIFVVGLPIGLAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 82 QAQGRACLAVMVSFLTWNYFINAMGMTWGSYFGVDFTQDA-VAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDK 160
Cdd:TIGR02005 80 KAQGRACLAALMGYLTFNYFINAILTQWGSSFGVNFTQGVgVGVSGLTSIAGIKTLDTSIIGAIIISGIITYIHNRFFDK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 161 KLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWVYTFLERILIPTGLHHFIYGPFI 240
Cdd:TIGR02005 160 RLPVFLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHHFIYGPFI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 241 FGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGGFALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAML 320
Cdd:TIGR02005 240 FGPAVVNHGIQAYWAQHLNEFAKSTKPLKELFPYGGFALHGNSKVFGCLGIALAMYATAPPENRKKVAGLLIPATLTAVV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 321 VGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVGNMGGGLIDQVLPqNWIPMFSNHADMMLTQIAIGLCFTLLY 400
Cdd:TIGR02005 320 VGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGVVGNMGGGLIDFIAT-NWLPLFKNHWGTYVTQIIIGLCFTAIY 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 401 FVVFRTLILQFNMCTPGREDAE--VKLYSKAEYKASRGQTT-AAEPKKELDQAAGILQALGGVGNISSINNCATRLRIAL 477
Cdd:TIGR02005 399 FLVFRFLILKFNIPTPGREDTEeeVKLYSKADYKAKKGDSVeSKRASSGNDKAAYFLQALGGKENIKDVTNCATRLRISV 478
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 38704195 478 HDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLI 523
Cdd:TIGR02005 479 KDESKVLDDEVFKKAGAHGVVRSGKAIQVIVGLSVPQVREAFEQLV 524
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
378-538 |
1.35e-112 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 331.29 E-value: 1.35e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 378 MFSNHADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQAL 457
Cdd:PRK09702 1 MFSNHADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 458 GGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSAENVAITEA 537
Cdd:PRK09702 81 GGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSAENVAITEA 160
|
.
gi 38704195 538 V 538
Cdd:PRK09702 161 V 161
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-520 |
9.06e-71 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 233.68 E-value: 9.06e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 1 MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGEsltdpNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLA 80
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGE-----GSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 81 kqaqGRACLAVMVSFLTWNYFINAMGMTWGSYFGVDFTQDAVAGSGlTMMAGIktldtsiigaiiISGIVTALHNRLFDK 160
Cdd:COG1263 83 ----GNPALAAVIGYLLVHPTLLNAYAVAGGYISFLGIPTLIGYQG-GVFPGI------------LAGWLAAYLEKFLKK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 161 KLPVFLGIFqgtsYVVIIAFLVMIPCAwLTLLG--WPKVQMGI-ESLQAFLRSAGALGVWVYTFLERILIPTGLHHFIYG 237
Cdd:COG1263 146 KLPDALGFF----FVPILTLLIMVPLA-LLVIGpiWPPIGNGIaAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 238 PFIFgPAAVEGGIqmywaqhlqefslsaeplkslfpeGGFALHGnSKIFGAVGISLAMYFTAAPenRVKVAGLLIPATLT 317
Cdd:COG1263 221 IFWF-LLGGTGDD------------------------GLFPILA-AAMFGQPGAALAVYLKAKP--NKKVKGLAISAALT 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 318 AMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVGNM--GGGLIDqvlpqnwIPMFSNHADMMLTQIAIGLC 395
Cdd:COG1263 273 AFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSfgVGGLID-------FPSILNPGATNLLLYLIGLV 345
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 396 FTLLYFVVFRTLIlqfnmctpGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRI 475
Cdd:COG1263 346 IAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKD 417
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 38704195 476 ALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLD 520
Cdd:COG1263 418 VVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVLEGLG 462
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
9-347 |
7.05e-51 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 176.77 E-value: 7.05e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 9 GGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTDPNSLFAqivHIIEEGGWTVFRNMPLIFAVGLPIGLAkQAQGRAC 88
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTGDSPLA---EILKQAGSAAFGILPILFAIGIAYGLA-GGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 89 LAVMVSFLTWNY--FINAMGMTWGsyfgvdftqdavaGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFD---KKLP 163
Cdd:pfam02378 77 AAGLIGLLSFNLaaAISVALTAAG-------------LSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLP 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 164 VFLGIFQGTSYVVII-AFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAG-ALGVWVYTFLERILIPTGLHHFIYGPFIF 241
Cdd:pfam02378 144 DSLPFFVGKRFVPIItGFVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWF 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 242 ---GPAAVEGGIQMYWAqhlqefslsaeplkslfpEGGFALHGN-SKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLT 317
Cdd:pfam02378 224 lpiGGSNPIANQQAYGA------------------GAAHILTGGfDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALT 285
|
330 340 350
....*....|....*....|....*....|
gi 38704195 318 AMLVGITEPLEFTFLFISPLLFAVHAVLAA 347
Cdd:pfam02378 286 PFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
448-523 |
1.23e-23 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 94.52 E-value: 1.23e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38704195 448 DQAAGILQALGGVGNISSINNCATRLRIALHDMSQtLDDEVFKKL-GAHGVFRSGDAIQVIIGLHVS-QLREQLDSLI 523
Cdd:cd00212 2 QLAKDILEALGGKENIVSLDHCATRLRLTVKDESK-VDEAALKKLgGVKGVVKNGGQYQVIIGPGVAdVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
2-523 |
0e+00 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 899.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 2 LSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGEsLTDPNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAK 81
Cdd:TIGR02005 1 MNAIQRFGGAMFVPVLLFAFAGIVVGFAILFKNPDIMGS-LADQNTFWYKFWSVIEEGGWTVFRQMPLIFVVGLPIGLAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 82 QAQGRACLAVMVSFLTWNYFINAMGMTWGSYFGVDFTQDA-VAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDK 160
Cdd:TIGR02005 80 KAQGRACLAALMGYLTFNYFINAILTQWGSSFGVNFTQGVgVGVSGLTSIAGIKTLDTSIIGAIIISGIITYIHNRFFDK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 161 KLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWVYTFLERILIPTGLHHFIYGPFI 240
Cdd:TIGR02005 160 RLPVFLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHHFIYGPFI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 241 FGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGGFALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAML 320
Cdd:TIGR02005 240 FGPAVVNHGIQAYWAQHLNEFAKSTKPLKELFPYGGFALHGNSKVFGCLGIALAMYATAPPENRKKVAGLLIPATLTAVV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 321 VGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVGNMGGGLIDQVLPqNWIPMFSNHADMMLTQIAIGLCFTLLY 400
Cdd:TIGR02005 320 VGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGVVGNMGGGLIDFIAT-NWLPLFKNHWGTYVTQIIIGLCFTAIY 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 401 FVVFRTLILQFNMCTPGREDAE--VKLYSKAEYKASRGQTT-AAEPKKELDQAAGILQALGGVGNISSINNCATRLRIAL 477
Cdd:TIGR02005 399 FLVFRFLILKFNIPTPGREDTEeeVKLYSKADYKAKKGDSVeSKRASSGNDKAAYFLQALGGKENIKDVTNCATRLRISV 478
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 38704195 478 HDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLI 523
Cdd:TIGR02005 479 KDESKVLDDEVFKKAGAHGVVRSGKAIQVIVGLSVPQVREAFEQLV 524
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
378-538 |
1.35e-112 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 331.29 E-value: 1.35e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 378 MFSNHADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQAL 457
Cdd:PRK09702 1 MFSNHADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 458 GGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSAENVAITEA 537
Cdd:PRK09702 81 GGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSAENVAITEA 160
|
.
gi 38704195 538 V 538
Cdd:PRK09702 161 V 161
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
60-358 |
1.51e-86 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 269.19 E-value: 1.51e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 60 GWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFINAMGMTWGSYFGVDFTQDAVAGSGLTMMAGIktldts 139
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVGNFFGFEIAKVGYTGVVGPIIVGA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 140 iigaiiisgIVTALHNRLFDKKLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVqmGIESLQAFLRSAG-ALGVWV 218
Cdd:TIGR00852 75 ---------IALALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHWLYSAGgALGGAI 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 219 YTFLERILIPTGLHHFIYGPFIF--GPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGGFALHG----NSKIFGAVGIS 292
Cdd:TIGR00852 144 FGFLYRLLVPTGLHHIFYAIFIQliAGGTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSiglpAAFSAGLGITE 223
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38704195 293 LAMYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGV 358
Cdd:TIGR00852 224 PAMYGVALRERRPFVAGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
1-519 |
2.63e-83 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 267.02 E-value: 2.63e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 1 MLSQIQRFGGAMFTPVLLFPFAGIVVGlaillqnpmfVGESLTDPNSLFAQIvhiIEEGGWTVFRNMPLIFAVGLPIGLA 80
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLR----------IGNATHGADLLVANF---FIAAGGAIFDNLGLLFAIGVAIGMS 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 81 KQAQGRACLAVMVSfltwnYFINAMG---MTWGSYFGVDFTQDAVAGSGLTMMAGIKTldtsiigaiiiSGIVTALHNRL 157
Cdd:TIGR01998 68 KDNDGAAALAGLVA-----YFVVTKVlspPPLAAALGIKSEINMAFSAWKNVFVGILA-----------GLIAGALYNRF 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 158 FDKKLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWVYTFLERILIPTGLHHFIYG 237
Cdd:TIGR01998 132 SEIKLPEALSFFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNS 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 238 PFIFGPAAVeGGIQMYWA-QHLQEFSLSAeplkSLFPEGGFALhgnsKIFGAVGISLAMYFTAAPENRVKVAGLLIPATL 316
Cdd:TIGR01998 212 VFWFDVAGI-NDFGNFTGgGDLNRFKGIA----GMFMAGFFPI----MMFGLPAAALAMYHTARPERRKQVGGMLLSVAF 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 317 TAMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVGNMG--GGLIDQVLpqNWIPMFSNHADMMLTQiaiGL 394
Cdd:TIGR01998 283 ASFLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGFSfsAGLIDYVL--SFNNPTANQPLMLLVQ---GL 357
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 395 CFTLLYFVVFRTLILQFNMCTPGREDAEVklyskaEYKASRGQTTAAEPKKELdqAAGILQALGGVGNISSINNCATRLR 474
Cdd:TIGR01998 358 VFFALYYVVFRFAIRRFNLKTPGREDEDP------EGATAAAVTSTGDSKMQL--AKQYLAALGGHDNLVSIDACITRLR 429
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 38704195 475 IALHDMSQtLDDEVFKKLGAHGVFRSGD-AIQVIIGLHVSQLREQL 519
Cdd:TIGR01998 430 LTLKDTSI-VDEPALKALGARGVVKLGKhNLQVILGPLAEIVAGEM 474
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
6-527 |
7.83e-72 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 238.48 E-value: 7.83e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 6 QRFGGAMFTPVLLFPFAGIVVGL------AILLQNPMFVGesltdpNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGL 79
Cdd:PRK10110 16 QQLGKTFMLPVALLSFCGIMLGIgsslssHDVITLIPFLG------NPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 80 AKQAQGRACLAVMVSFLTWNYFINamgmTWGSYFGVDFTQDAVA--GSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRL 157
Cdd:PRK10110 90 ARENKGVAAFAGFVGYAVMNLAVN----FWLTNKGILPTTDAAVlkANNIQSILGIQSIDTGILGAVIAGIIVWMLHERF 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 158 FDKKLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWVYTFLERILIPTGLHHFIYG 237
Cdd:PRK10110 166 HNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVA 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 238 PFIFGPAA---------VEGGIQMYWAQhlqefsLSAePLKSLFPEGGFALHGNSK----IFGAVGISLAMYFTAAPENR 304
Cdd:PRK10110 246 LIRFTDAGgtqevcgqtVSGALTIFQAQ------LSC-PTTHGFSESATRFLSQGKmpafLGGLPGAALAMYHCARPENR 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 305 VKVAGLLIPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGV-VGNMGGGLID-------QVLPQNWi 376
Cdd:PRK10110 319 HKIKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVtIGNTDGNIIDfvvfgilHGLSTKW- 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 377 pmfsnhadmMLTQIAIGLCFTlLYFVVFRTLILQFNMCTPGREDaevklyskaEYKASRGQTTAAEPKKELDQAAGILQA 456
Cdd:PRK10110 398 ---------YMVPVVAAIWFV-VYYVIFRFAITRFNLKTPGRDS---------EVASSIEKAVAGAPGKSGYNVPAILEA 458
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38704195 457 LGGVGNISSINNCATRLRIALHDMSQtLDDEVFKKLGAHGVFR-SGDAIQVIIGLHVSQLREQLDSLINSHQ 527
Cdd:PRK10110 459 LGGADNIVSLDNCITRLRLSVKDMSL-VDVQALKDNRAIGVVQlNQHNLQVVIGPQVQSVKDEMAGLMHTVQ 529
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-520 |
9.06e-71 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 233.68 E-value: 9.06e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 1 MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGEsltdpNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLA 80
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGE-----GSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 81 kqaqGRACLAVMVSFLTWNYFINAMGMTWGSYFGVDFTQDAVAGSGlTMMAGIktldtsiigaiiISGIVTALHNRLFDK 160
Cdd:COG1263 83 ----GNPALAAVIGYLLVHPTLLNAYAVAGGYISFLGIPTLIGYQG-GVFPGI------------LAGWLAAYLEKFLKK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 161 KLPVFLGIFqgtsYVVIIAFLVMIPCAwLTLLG--WPKVQMGI-ESLQAFLRSAGALGVWVYTFLERILIPTGLHHFIYG 237
Cdd:COG1263 146 KLPDALGFF----FVPILTLLIMVPLA-LLVIGpiWPPIGNGIaAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 238 PFIFgPAAVEGGIqmywaqhlqefslsaeplkslfpeGGFALHGnSKIFGAVGISLAMYFTAAPenRVKVAGLLIPATLT 317
Cdd:COG1263 221 IFWF-LLGGTGDD------------------------GLFPILA-AAMFGQPGAALAVYLKAKP--NKKVKGLAISAALT 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 318 AMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVGNM--GGGLIDqvlpqnwIPMFSNHADMMLTQIAIGLC 395
Cdd:COG1263 273 AFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSfgVGGLID-------FPSILNPGATNLLLYLIGLV 345
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 396 FTLLYFVVFRTLIlqfnmctpGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRI 475
Cdd:COG1263 346 IAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKD 417
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 38704195 476 ALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLD 520
Cdd:COG1263 418 VVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVLEGLG 462
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
3-526 |
1.08e-68 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 228.83 E-value: 1.08e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 3 SQIQRFGGAMFTPVLLFPFAGIVVGlaillqnpmfVGESltDPNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQ 82
Cdd:PRK11089 7 ANLQKVGKSLMLPVSVLPIAGILLG----------VGSA--NFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 83 aQGRACLAVMVSfltwnYFINAMGMTwgsyfgvdFTQDAVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDKKL 162
Cdd:PRK11089 75 -DGVSALAAVVA-----YGIMVKTMA--------VVAPLVLHLPAEEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRIKL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 163 PVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQ---AFLRSAGALGVwvYTFLERILIPTGLHHFIYGPF 239
Cdd:PRK11089 141 PEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSqwaAYQNPVVAFGI--YGFVERSLVPFGLHHIWNVPF 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 240 IF--------GPAAVEGGIQMYWAQHLQEFSLSaeplkslfpeGGFALhgnsKIFGAVGISLAMYFTAAPENRVKVAGLL 311
Cdd:PRK11089 219 QMqigeytnaAGQVFHGDIPRYMAGDPTAGKLS----------GGFLF----KMYGLPAAAIAIWHSAKPENRAKVGGIM 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 312 IPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVG--NMGGGLIDQVLpqnwipmFSNHADMMLTQ 389
Cdd:PRK11089 285 ISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDgtSFSHGLIDFIV-------LSGNSSKLWLF 357
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 390 IAIGLCFTLLYFVVFRTLILQFNMCTPGREDaevklySKAEYKASRGQTTAAEpkkeldqaagILQALGGVGNISSINNC 469
Cdd:PRK11089 358 PIVGIGYAIVYYTIFRVLIKALDLKTPGRED------ETEDAKATGTSEMAPA----------LVAAFGGKENITNLDAC 421
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 38704195 470 ATRLRIALHDMSQtLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSH 526
Cdd:PRK11089 422 ITRLRVSVADVSK-VDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNH 477
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-523 |
1.90e-52 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 188.93 E-value: 1.90e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 1 MLSQIQRFGGAMFTPVLLFPFAgivvglAILLQnpmfvgesLTDPNSLFaqiVHIIEEGGWTVFRNMPLIFAVGLPIGLA 80
Cdd:PRK10255 3 ILGFFQRLGRALQLPIAVLPVA------ALLLR--------FGQPDLLN---VAFIAQAGGAIFDNLALIFAIGVASSWS 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 81 KQAQGRACLAVMVSfltwnYFINAMGMTwgsyfgvdfTQDAVAGSGLtmMAGIKTldtsiigaiiiSGIVTALHNRLFDK 160
Cdd:PRK10255 66 KDSAGAAALAGAVG-----YFVLTKAMV---------TINPEINMGV--LAGIIT-----------GLVGGAAYNRWSDI 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 161 KLPVFLGIFQGTSYVVI-IAFLVMIPCAWLTLLgWPKVQMGIESLQAFLRSAGALGVWVYTFLERILIPTGLHH------ 233
Cdd:PRK10255 119 KLPDFLSFFGGKRFVPIaTGFFCLVLAAIFGYV-WPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQvlntia 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 234 -FIYGPFIFGPAAV-EGGIQMYWAqhlqefslsAEPLKSLFPEGGFALhgnsKIFGAVGISLAMYFTAAPENRVKVAGLL 311
Cdd:PRK10255 198 wFQIGEFTNAAGTVfHGDINRFYA---------GDGTAGMFMSGFFPI----MMFGLPGAALAMYFAAPKERRPMVGGML 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 312 IPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVG--NMGGGLIDQVLPQNwIPMFSNHADMMLTq 389
Cdd:PRK10255 265 LSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAgfSFSAGAIDYALMYN-LPAASQNVWMLLV- 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 390 iaIGLCFTLLYFVVFRTLILQFNMCTPGREDAEvklyskAEYKASRGQTTAAEPKKELdqAAGILQALGGVGNISSINNC 469
Cdd:PRK10255 343 --MGVVFFAIYFVLFSAVIRMFNLKTPGREDKE------DEIVTEEANSNTEEGLTQL--ATNYIAAVGGTDNLKAIDAC 412
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 38704195 470 ATRLRIALHDmSQTLDDEVFKKLGAHGVFR-SGDAIQVIIGLHVSQLREQLDSLI 523
Cdd:PRK10255 413 ITRLRLTVAD-SARVNDAMCKRLGASGVVKlNKQTIQVIVGAKAESIGDAMKKVV 466
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
9-347 |
7.05e-51 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 176.77 E-value: 7.05e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 9 GGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTDPNSLFAqivHIIEEGGWTVFRNMPLIFAVGLPIGLAkQAQGRAC 88
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTGDSPLA---EILKQAGSAAFGILPILFAIGIAYGLA-GGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 89 LAVMVSFLTWNY--FINAMGMTWGsyfgvdftqdavaGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFD---KKLP 163
Cdd:pfam02378 77 AAGLIGLLSFNLaaAISVALTAAG-------------LSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLP 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 164 VFLGIFQGTSYVVII-AFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAG-ALGVWVYTFLERILIPTGLHHFIYGPFIF 241
Cdd:pfam02378 144 DSLPFFVGKRFVPIItGFVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWF 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 242 ---GPAAVEGGIQMYWAqhlqefslsaeplkslfpEGGFALHGN-SKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLT 317
Cdd:pfam02378 224 lpiGGSNPIANQQAYGA------------------GAAHILTGGfDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALT 285
|
330 340 350
....*....|....*....|....*....|
gi 38704195 318 AMLVGITEPLEFTFLFISPLLFAVHAVLAA 347
Cdd:pfam02378 286 PFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
409-509 |
6.21e-30 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 112.45 E-value: 6.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 409 LQFNMCTPGREDAEVKlyskaeykasrgQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRIALHDMSQTlDDEV 488
Cdd:TIGR00826 1 TRLRLKTPGREKADEE------------AIAAGEGVKGVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKV-DDAV 67
|
90 100
....*....|....*....|.
gi 38704195 489 FKKLGAHGVFRSGDAIQVIIG 509
Cdd:TIGR00826 68 LKKLGAHGVNPLQRAVQVISG 88
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
448-523 |
8.76e-28 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 105.97 E-value: 8.76e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38704195 448 DQAAGILQALGGVGNISSINNCATRLRIALHDMSQtLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLI 523
Cdd:COG1264 2 ELAKDILEALGGKENIVSVDHCATRLRVTVKDPSK-VDEAALKKLGVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
448-523 |
1.23e-23 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 94.52 E-value: 1.23e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38704195 448 DQAAGILQALGGVGNISSINNCATRLRIALHDMSQtLDDEVFKKL-GAHGVFRSGDAIQVIIGLHVS-QLREQLDSLI 523
Cdd:cd00212 2 QLAKDILEALGGKENIVSLDHCATRLRLTVKDESK-VDEAALKKLgGVKGVVKNGGQYQVIIGPGVAdVYKEAIKLLG 78
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
453-482 |
3.46e-11 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 57.76 E-value: 3.46e-11
10 20 30
....*....|....*....|....*....|
gi 38704195 453 ILQALGGVGNISSINNCATRLRIALHDMSQ 482
Cdd:pfam00367 3 ILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
450-524 |
3.14e-08 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 55.96 E-value: 3.14e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38704195 450 AAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLIN 524
Cdd:PRK09796 9 ARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLP 83
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
453-533 |
1.31e-07 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 54.30 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 453 ILQALGGVGNISSINNCATRLRIALHDmSQTLDDEVFKKL-GAHGVFRSGDAIQVIIGLHVSQ-----LREQLDSLINSH 526
Cdd:PRK09586 12 ILTRVGGPGNIASCGNCMTRLRLTLHD-SSLVDPAAIKTIeGVKGVILSDDQVQVVLGPGKAQraakaMNELLGEAAAPV 90
|
....*..
gi 38704195 527 QSAENVA 533
Cdd:PRK09586 91 QDLAEIA 97
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
448-513 |
4.72e-07 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 52.35 E-value: 4.72e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38704195 448 DQAAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVS 513
Cdd:TIGR01995 3 DLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVN 68
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
450-509 |
4.46e-06 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 49.22 E-value: 4.46e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 38704195 450 AAGILQALGGVGNISSINNCATRLRIALHDMSQtLDDEVFKKL-GAHGVFRSGDAIQVIIG 509
Cdd:TIGR01996 6 AKEILELLGGKDNIVSVAHCATRLRLVLKDESK-IDKKAIENLdGVKGTFFNSGQYQIIIG 65
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
450-513 |
6.27e-06 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 48.94 E-value: 6.27e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38704195 450 AAGILQALGGVGNISSINNCATRLRIALHDmSQTLDDEVFKK-LGAHGVFRSGDAIQVIIGLHVS 513
Cdd:PRK09824 7 AREIVAGVGGADNIVSLMHCATRLRFKLKD-NSKAQAEVLKKnPGVIMVVESGGQFQVVIGNHVA 70
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
432-523 |
1.43e-04 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 44.25 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704195 432 KASRGQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLH 511
Cdd:PRK14905 260 KALAGSKIDPIIHKFSEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAG 339
|
90
....*....|...
gi 38704195 512 -VSQLREQLDSLI 523
Cdd:PRK14905 340 iVEKIHEEMKALL 352
|
|
| |
