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Conserved domains on  [gi|15834215|ref|NP_312988|]
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positive regulator of late transcription protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

Mor domain-containing protein( domain architecture ID 10555626)

Mor domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mor pfam08765
Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA ...
 33-140 3.07e-37

Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.


:

Pssm-ID: 400902  Cd Length: 107  Bit Score: 122.78  E-value: 3.07e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834215    33 KNWPRTLSELVEVTGAELQRQGIEPVLAGKLARKVAAAQAAYMGGRGYYLPVGESLFAELRNNEIFSRWDrGEKIESLRR 112
Cdd:pfam08765   1 SRWPELLSDLADHVAAELKRLGIDNELAEQIGIEVADALAAHWGGQQIYIPRGQSLRLALRDLEIYNEFN-GNNHAELAR 79

                          90       100
                  ....*....|....*....|....*...
gi 15834215   113 HYRMSETQIYTVIREQRRLHLARTQPPL 140
Cdd:pfam08765  80 KYGVSEQWIYKIIKRVRKLEIARRQPDL 107
 
Name Accession Description Interval E-value
Mor pfam08765
Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA ...
 33-140 3.07e-37

Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.


Pssm-ID: 400902  Cd Length: 107  Bit Score: 122.78  E-value: 3.07e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834215    33 KNWPRTLSELVEVTGAELQRQGIEPVLAGKLARKVAAAQAAYMGGRGYYLPVGESLFAELRNNEIFSRWDrGEKIESLRR 112
Cdd:pfam08765   1 SRWPELLSDLADHVAAELKRLGIDNELAEQIGIEVADALAAHWGGQQIYIPRGQSLRLALRDLEIYNEFN-GNNHAELAR 79

                          90       100
                  ....*....|....*....|....*...
gi 15834215   113 HYRMSETQIYTVIREQRRLHLARTQPPL 140
Cdd:pfam08765  80 KYGVSEQWIYKIIKRVRKLEIARRQPDL 107
Mor COG5566
Transcriptional regulator, middle operon regulator (Mor) family [Transcription, Mobilome: ...
 26-141 1.26e-33

Transcriptional regulator, middle operon regulator (Mor) family [Transcription, Mobilome: prophages, transposons];


Pssm-ID: 444308  Cd Length: 120  Bit Score: 113.93  E-value: 1.26e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834215  26 IPDDVLKKNWPRTLSELVEVTGAELQR-QGIEPVLAGKLARKVAAAQAAYMGGRGYYLPVGESLFAELRNNEIFSRWDrG 104
Cdd:COG5566   3 DAEEDLRSRWPELLAELADVLAATLEElPGLDEELAELIGLEVALALASYYGGQNIYFPKGDSLRRALRDLEIWREFN-G 81

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 15834215 105 EKIESLRRHYRMSETQIYTVIREQRRLHLARTQPPLF 141
Cdd:COG5566  82 NNHRELARKYGLSERWIYEIVKRVRKEERARRQPSLF 118
 
Name Accession Description Interval E-value
Mor pfam08765
Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA ...
 33-140 3.07e-37

Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.


Pssm-ID: 400902  Cd Length: 107  Bit Score: 122.78  E-value: 3.07e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834215    33 KNWPRTLSELVEVTGAELQRQGIEPVLAGKLARKVAAAQAAYMGGRGYYLPVGESLFAELRNNEIFSRWDrGEKIESLRR 112
Cdd:pfam08765   1 SRWPELLSDLADHVAAELKRLGIDNELAEQIGIEVADALAAHWGGQQIYIPRGQSLRLALRDLEIYNEFN-GNNHAELAR 79

                          90       100
                  ....*....|....*....|....*...
gi 15834215   113 HYRMSETQIYTVIREQRRLHLARTQPPL 140
Cdd:pfam08765  80 KYGVSEQWIYKIIKRVRKLEIARRQPDL 107
Mor COG5566
Transcriptional regulator, middle operon regulator (Mor) family [Transcription, Mobilome: ...
 26-141 1.26e-33

Transcriptional regulator, middle operon regulator (Mor) family [Transcription, Mobilome: prophages, transposons];


Pssm-ID: 444308  Cd Length: 120  Bit Score: 113.93  E-value: 1.26e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834215  26 IPDDVLKKNWPRTLSELVEVTGAELQR-QGIEPVLAGKLARKVAAAQAAYMGGRGYYLPVGESLFAELRNNEIFSRWDrG 104
Cdd:COG5566   3 DAEEDLRSRWPELLAELADVLAATLEElPGLDEELAELIGLEVALALASYYGGQNIYFPKGDSLRRALRDLEIWREFN-G 81

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 15834215 105 EKIESLRRHYRMSETQIYTVIREQRRLHLARTQPPLF 141
Cdd:COG5566  82 NNHRELARKYGLSERWIYEIVKRVRKEERARRQPSLF 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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