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Conserved domains on  [gi|15834231|ref|NP_313004|]
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phage structural protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

DUF1834 family protein( domain architecture ID 10009023)

DUF1834 family protein similar to Haemophilus influenzae Mu-like prophage FluMu protein gp37

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
gp37 COG5003
Mu-like prophage protein gp37 [Mobilome: prophages, transposons];
1-132 2.54e-51

Mu-like prophage protein gp37 [Mobilome: prophages, transposons];


:

Pssm-ID: 444027  Cd Length: 143  Bit Score: 161.72  E-value: 2.54e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834231   1 MITETEQAYIARIREYFGNELVSVDTHPGDWSDSVlRTMLINAPAIYVAWLGA-----GEGRTRGRLVSHWVFYVIGDML 75
Cdd:COG5003   1 MIAQIEDALIARLRAGLGRLVRTVESYPGEWDDDV-RRVVRRLPAVWVAFGGSrkepvGTGRRRYKVTARWVVFVAARSL 79
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15834231  76 NGREASR------PGLYQIVARLIAVLNGFRTEKT-SPLYFEKAVNGYTETQADSGAVMYALYF 132
Cdd:COG5003  80 RGEAAGRrgdkreVGAYQLLEAVRRLLNGQDLGLLgTPLVPGRVRNLFNDTQQGQGVAVYALEF 143
 
Name Accession Description Interval E-value
gp37 COG5003
Mu-like prophage protein gp37 [Mobilome: prophages, transposons];
1-132 2.54e-51

Mu-like prophage protein gp37 [Mobilome: prophages, transposons];


Pssm-ID: 444027  Cd Length: 143  Bit Score: 161.72  E-value: 2.54e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834231   1 MITETEQAYIARIREYFGNELVSVDTHPGDWSDSVlRTMLINAPAIYVAWLGA-----GEGRTRGRLVSHWVFYVIGDML 75
Cdd:COG5003   1 MIAQIEDALIARLRAGLGRLVRTVESYPGEWDDDV-RRVVRRLPAVWVAFGGSrkepvGTGRRRYKVTARWVVFVAARSL 79
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15834231  76 NGREASR------PGLYQIVARLIAVLNGFRTEKT-SPLYFEKAVNGYTETQADSGAVMYALYF 132
Cdd:COG5003  80 RGEAAGRrgdkreVGAYQLLEAVRRLLNGQDLGLLgTPLVPGRVRNLFNDTQQGQGVAVYALEF 143
Phage_Mu_Gp37 pfam08873
Bacteriophage Mu, Gp37; This family is represented by Bacteriophage Mu, Gp37 (also known as ...
1-172 2.56e-20

Bacteriophage Mu, Gp37; This family is represented by Bacteriophage Mu, Gp37 (also known as Probable tail terminator protein) which may stop tail tube polymerization by capping the rapidly polymerizing tail tube once it has reached its requisite length and prevent its depolymerization. This family also has prophages matches, such as the Gp37 protein from the FluMu prophage.


Pssm-ID: 370167  Cd Length: 204  Bit Score: 83.70  E-value: 2.56e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834231     1 MITETEQAYIARIREYFGNELVSVDTHPGDWSDSVLRTmLINAPAIYVAWLG------AGEGRTRGRLVSHWVFYVIGDM 74
Cdd:pfam08873   1 MIAKIEDAIIARLREGLGRYVRTVASYGGELDDEALTV-LRRLPAVWVVFGGerrsepVGTGRLRYKVPARFVVLVAARN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834231    75 LNGREASR------PGLYQIVARLIAVLN----GFRTEKTSPLYFEKAVNGYTETQadsGAVMYALYFSCE--------- 135
Cdd:pfam08873  80 LRGEAAARrgdvreVGVYQLLEAVRRLLAgqdlGLAVDPLVPGRVRTLFNGKRQAQ---GLSVYACEFHTRyadcallrg 156
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 15834231   136 EMIAPLTDTSSlDDFLRHYETFVEPPGTPPFEAHIDL 172
Cdd:pfam08873 157 RWPTPQTMADP-DALLAPYQGRLDDPALTLDAQLPKW 192
 
Name Accession Description Interval E-value
gp37 COG5003
Mu-like prophage protein gp37 [Mobilome: prophages, transposons];
1-132 2.54e-51

Mu-like prophage protein gp37 [Mobilome: prophages, transposons];


Pssm-ID: 444027  Cd Length: 143  Bit Score: 161.72  E-value: 2.54e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834231   1 MITETEQAYIARIREYFGNELVSVDTHPGDWSDSVlRTMLINAPAIYVAWLGA-----GEGRTRGRLVSHWVFYVIGDML 75
Cdd:COG5003   1 MIAQIEDALIARLRAGLGRLVRTVESYPGEWDDDV-RRVVRRLPAVWVAFGGSrkepvGTGRRRYKVTARWVVFVAARSL 79
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15834231  76 NGREASR------PGLYQIVARLIAVLNGFRTEKT-SPLYFEKAVNGYTETQADSGAVMYALYF 132
Cdd:COG5003  80 RGEAAGRrgdkreVGAYQLLEAVRRLLNGQDLGLLgTPLVPGRVRNLFNDTQQGQGVAVYALEF 143
Phage_Mu_Gp37 pfam08873
Bacteriophage Mu, Gp37; This family is represented by Bacteriophage Mu, Gp37 (also known as ...
1-172 2.56e-20

Bacteriophage Mu, Gp37; This family is represented by Bacteriophage Mu, Gp37 (also known as Probable tail terminator protein) which may stop tail tube polymerization by capping the rapidly polymerizing tail tube once it has reached its requisite length and prevent its depolymerization. This family also has prophages matches, such as the Gp37 protein from the FluMu prophage.


Pssm-ID: 370167  Cd Length: 204  Bit Score: 83.70  E-value: 2.56e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834231     1 MITETEQAYIARIREYFGNELVSVDTHPGDWSDSVLRTmLINAPAIYVAWLG------AGEGRTRGRLVSHWVFYVIGDM 74
Cdd:pfam08873   1 MIAKIEDAIIARLREGLGRYVRTVASYGGELDDEALTV-LRRLPAVWVVFGGerrsepVGTGRLRYKVPARFVVLVAARN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834231    75 LNGREASR------PGLYQIVARLIAVLN----GFRTEKTSPLYFEKAVNGYTETQadsGAVMYALYFSCE--------- 135
Cdd:pfam08873  80 LRGEAAARrgdvreVGVYQLLEAVRRLLAgqdlGLAVDPLVPGRVRTLFNGKRQAQ---GLSVYACEFHTRyadcallrg 156
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 15834231   136 EMIAPLTDTSSlDDFLRHYETFVEPPGTPPFEAHIDL 172
Cdd:pfam08873 157 RWPTPQTMADP-DALLAPYQGRLDDPALTLDAQLPKW 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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