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Conserved domains on  [gi|15834248|ref|NP_313021|]
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hypothetical protein ECs_4994 [Escherichia coli O157:H7 str. Sakai]

Protein Classification

DUF1378 family protein( domain architecture ID 10537339)

DUF1378 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1378 pfam07125
Protein of unknown function (DUF1378); This family consists of hypothetical bacterial and ...
 1-59 1.10e-34

Protein of unknown function (DUF1378); This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


:

Pssm-ID: 115758  Cd Length: 59  Bit Score: 111.54  E-value: 1.10e-34
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 15834248    1 MTFVHTMLLYFCAVVSALYLVSGGYKVIRNYIRRKIDDAAAEKLSKTAQAPSSPNDPTP 59
Cdd:pfam07125  1 MTFVHTMLLYFCTVVCALYLVSGGYKVIRNYIRRKIDDAAAEKISASQSAGSKPEEPLI 59
 
Name Accession Description Interval E-value
DUF1378 pfam07125
Protein of unknown function (DUF1378); This family consists of hypothetical bacterial and ...
 1-59 1.10e-34

Protein of unknown function (DUF1378); This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 115758  Cd Length: 59  Bit Score: 111.54  E-value: 1.10e-34
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 15834248    1 MTFVHTMLLYFCAVVSALYLVSGGYKVIRNYIRRKIDDAAAEKLSKTAQAPSSPNDPTP 59
Cdd:pfam07125  1 MTFVHTMLLYFCTVVCALYLVSGGYKVIRNYIRRKIDDAAAEKISASQSAGSKPEEPLI 59
 
Name Accession Description Interval E-value
DUF1378 pfam07125
Protein of unknown function (DUF1378); This family consists of hypothetical bacterial and ...
 1-59 1.10e-34

Protein of unknown function (DUF1378); This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 115758  Cd Length: 59  Bit Score: 111.54  E-value: 1.10e-34
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 15834248    1 MTFVHTMLLYFCAVVSALYLVSGGYKVIRNYIRRKIDDAAAEKLSKTAQAPSSPNDPTP 59
Cdd:pfam07125  1 MTFVHTMLLYFCTVVCALYLVSGGYKVIRNYIRRKIDDAAAEKISASQSAGSKPEEPLI 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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