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Conserved domains on  [gi|90111097|ref|NP_414731|]
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modulator of Rho-dependent transcription termination [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Rho-binding antiterminator( domain architecture ID 10013850)

Rho-binding antiterminator suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11625 PRK11625
Rho-binding antiterminator; Provisional
1-84 5.66e-55

Rho-binding antiterminator; Provisional


:

Pssm-ID: 183241  Cd Length: 84  Bit Score: 164.50  E-value: 5.66e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111097   1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVV 80
Cdd:PRK11625  1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDLVSRKNVEYLVVEAAGETRELRLDKIASFSHPEIGTVV 80

                ....
gi 90111097  81 VSES 84
Cdd:PRK11625 81 VSES 84
 
Name Accession Description Interval E-value
PRK11625 PRK11625
Rho-binding antiterminator; Provisional
1-84 5.66e-55

Rho-binding antiterminator; Provisional


Pssm-ID: 183241  Cd Length: 84  Bit Score: 164.50  E-value: 5.66e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111097   1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVV 80
Cdd:PRK11625  1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDLVSRKNVEYLVVEAAGETRELRLDKIASFSHPEIGTVV 80

                ....
gi 90111097  81 VSES 84
Cdd:PRK11625 81 VSES 84
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
2-84 7.86e-40

Transcriptional antiterminator Rof (Rho-off) [Transcription];


Pssm-ID: 443625  Cd Length: 87  Bit Score: 126.19  E-value: 7.86e-40
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111097  2 NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIG---- 77
Cdd:COG4568  1 NEEYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTLTRKKVEYLVLETDGETRELRLDHIASFSALELGphfs 80

               ....*..
gi 90111097 78 TVVVSES 84
Cdd:COG4568 81 TVVFSPS 87
ROF pfam07073
Modulator of Rho-dependent transcription termination (ROF); This family consists of several ...
7-81 4.85e-34

Modulator of Rho-dependent transcription termination (ROF); This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.


Pssm-ID: 429276  Cd Length: 80  Bit Score: 111.53  E-value: 4.85e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111097    7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK-NVEYLVVEAAGETRELRLDKITSFS----HPEIGTVVV 81
Cdd:pfam07073  1 PISCDDYDYIEIACLYRYPLKLTLKDGETIEGKALDTLTRAdKEEYLVIETEGEEQELRLDQLVSISvltpNPHFGRVVF 80
 
Name Accession Description Interval E-value
PRK11625 PRK11625
Rho-binding antiterminator; Provisional
1-84 5.66e-55

Rho-binding antiterminator; Provisional


Pssm-ID: 183241  Cd Length: 84  Bit Score: 164.50  E-value: 5.66e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111097   1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVV 80
Cdd:PRK11625  1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDLVSRKNVEYLVVEAAGETRELRLDKIASFSHPEIGTVV 80

                ....
gi 90111097  81 VSES 84
Cdd:PRK11625 81 VSES 84
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
2-84 7.86e-40

Transcriptional antiterminator Rof (Rho-off) [Transcription];


Pssm-ID: 443625  Cd Length: 87  Bit Score: 126.19  E-value: 7.86e-40
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111097  2 NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIG---- 77
Cdd:COG4568  1 NEEYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTLTRKKVEYLVLETDGETRELRLDHIASFSALELGphfs 80

               ....*..
gi 90111097 78 TVVVSES 84
Cdd:COG4568 81 TVVFSPS 87
ROF pfam07073
Modulator of Rho-dependent transcription termination (ROF); This family consists of several ...
7-81 4.85e-34

Modulator of Rho-dependent transcription termination (ROF); This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.


Pssm-ID: 429276  Cd Length: 80  Bit Score: 111.53  E-value: 4.85e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111097    7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK-NVEYLVVEAAGETRELRLDKITSFS----HPEIGTVVV 81
Cdd:pfam07073  1 PISCDDYDYIEIACLYRYPLKLTLKDGETIEGKALDTLTRAdKEEYLVIETEGEEQELRLDQLVSISvltpNPHFGRVVF 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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