|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10782 |
PRK10782 |
D-methionine ABC transporter permease MetI; |
1-217 |
2.15e-135 |
|
D-methionine ABC transporter permease MetI;
Pssm-ID: 182726 Cd Length: 217 Bit Score: 378.31 E-value: 2.15e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 1 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782 1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16128191 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
|
|
| MetP |
COG2011 |
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
1-217 |
4.61e-90 |
|
ABC-type methionine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 441614 Cd Length: 220 Bit Score: 263.84 E-value: 4.61e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 1 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011 4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011 84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16128191 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
Cdd:COG2011 164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
14-177 |
5.75e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 67.30 E-value: 5.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 14 WETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiianaKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQ--- 90
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 170
Cdd:cd06261 75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154
|
....*..
gi 16128191 171 GLGQIGY 177
Cdd:cd06261 155 EAPGPGT 161
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
9-147 |
9.24e-11 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 59.48 E-value: 9.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLlyvtRPGQIIANAKLYRTVSAIVNIFRSIPfiiLLVWMIPFTrVIVGtsIG 88
Cdd:TIGR01097 56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LG 125
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 16128191 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
49-217 |
4.59e-09 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 53.84 E-value: 4.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 49 NAKLYRTVSAIVNIFRSIP-FIILLVWMIPFTRVIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
Cdd:pfam00528 13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAG 207
Cdd:pfam00528 91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170
|
170
....*....|
gi 16128191 208 DRIVRAVTRK 217
Cdd:pfam00528 171 DILQRLLDPR 180
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10782 |
PRK10782 |
D-methionine ABC transporter permease MetI; |
1-217 |
2.15e-135 |
|
D-methionine ABC transporter permease MetI;
Pssm-ID: 182726 Cd Length: 217 Bit Score: 378.31 E-value: 2.15e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 1 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782 1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16128191 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
|
|
| MetP |
COG2011 |
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
1-217 |
4.61e-90 |
|
ABC-type methionine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 441614 Cd Length: 220 Bit Score: 263.84 E-value: 4.61e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 1 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011 4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011 84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16128191 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
Cdd:COG2011 164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
|
|
| OpuBB |
COG1174 |
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
13-153 |
1.27e-16 |
|
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 75.09 E-value: 1.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 13 VWETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqiianaKLYRTVSAIVNIFRSIPFIILLVWMIPFTrvivgtSIGLQAA 92
Cdd:COG1174 20 LLEHLLLVLLALLIALLIAVPLGILITRRR--------RLAGLVLGVANILQTIPSLALLALLIPLL------GIGPAPA 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16128191 93 IVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALP----GLVNAATIT 153
Cdd:COG1174 86 IIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPvilaGIRTAAVQN 150
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
8-148 |
2.27e-15 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 71.64 E-value: 2.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVllyvtrpGQIIANAKLYRTVSAIVNIFRSIPFIILLVW---MIPFtrviVG 84
Cdd:COG0765 14 LLLEGLLVTLLLTVLAIVLGLVLGLLLAL-------ARLSPNPVLRWLATAYVEFFRGTPLLVQLFFiyfGLPL----LG 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128191 85 TSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEA----LPGLVN 148
Cdd:COG0765 83 IDLSpFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQAlriiLPPLGN 151
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
14-177 |
5.75e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 67.30 E-value: 5.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 14 WETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiianaKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQ--- 90
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 170
Cdd:cd06261 75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154
|
....*..
gi 16128191 171 GLGQIGY 177
Cdd:cd06261 155 EAPGPGT 161
|
|
| PstC |
COG0573 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
12-150 |
7.22e-14 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440338 [Multi-domain] Cd Length: 303 Bit Score: 68.96 E-value: 7.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 12 GVWETLAMTFVSGFFGFVIGLPVGVL--LYVTRpgqiIANAKLYRTVSAIVNIFRSIPFIIL----LVWMIPFTRVIV-- 83
Cdd:COG0573 74 GILPLIVGTLLVSLIALLIAVPLGLGiaIFLSE----YAPPRLRRILKPAIELLAGIPSVVYgfwgLFVLVPLLRDLFpw 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16128191 84 -GTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAA 150
Cdd:COG0573 150 pPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
9-158 |
6.27e-13 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 65.55 E-value: 6.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiianakLYRTVSAIVNIFRSIPFIILlvwmIPFTRVIVGtsIG 88
Cdd:COG0600 59 LWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL--------LRRLLDPLLVFLRPIPPLAL----APLLILWFG--IG 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128191 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALP----GLVNAATITLITLV 158
Cdd:COG0600 125 EASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPyiftGLRIALGLAWIGLV 198
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
6-148 |
6.29e-13 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 65.49 E-value: 6.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 6 MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLlyVTRPgqIIANAKLYRTVSAIVNIFRSIPfiiLLVWMIPFTRvIVGt 85
Cdd:COG3639 46 LPDLLSALLETLAIALLGTLLGAVLALPLAFL--AARN--LAPNPWVRLLARRLLNVLRAIP---ELVWALIFVA-AVG- 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16128191 86 sIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVN 148
Cdd:COG3639 117 -LGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
9-147 |
9.24e-11 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 59.48 E-value: 9.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLlyvtRPGQIIANAKLYRTVSAIVNIFRSIPfiiLLVWMIPFTrVIVGtsIG 88
Cdd:TIGR01097 56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LG 125
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 16128191 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
|
|
| PstA |
COG0581 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
16-154 |
1.45e-10 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440346 [Multi-domain] Cd Length: 259 Bit Score: 58.89 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 16 TLAMTFVSGFFGFVIGLPVGVLLYVTRPGqiianAKLYRTVSAIVNIFRSIPFII-----LLVWMIPFtrvivGTSIGLQ 90
Cdd:COG0581 46 TLLLVLLATLIAVPLGVLAAIYLAEYARG-----GRLARLIRFAIDVLAGVPSIVyglfgYALFVLTL-----GLGFSLL 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128191 91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITL 154
Cdd:COG0581 116 AGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAI 179
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
9-156 |
3.36e-09 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 55.12 E-value: 3.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLL-YVTRpgqiianaKLYRTVSAIVNIFRSIPFIILLVWMIpftrVIVGTSI 87
Cdd:COG1173 74 LLYGARISLLVGLLAVLIALVIGVLLGLLAgYFGG--------WVDAVLMRLVDVLLAFPSLLLAIALV----AVLGPGL 141
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 88 GLqaAIVPLTVGAAPFIARMVENALLEIPT-GLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLIT 156
Cdd:COG1173 142 LN--VILALGLTGWPGYARLVRAQVLSLRErEYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
49-217 |
4.59e-09 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 53.84 E-value: 4.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 49 NAKLYRTVSAIVNIFRSIP-FIILLVWMIPFTRVIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
Cdd:pfam00528 13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAG 207
Cdd:pfam00528 91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170
|
170
....*....|
gi 16128191 208 DRIVRAVTRK 217
Cdd:pfam00528 171 DILQRLLDPR 180
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
20-154 |
6.39e-09 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 54.58 E-value: 6.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 20 TFVSGFFGFVIGLPVGVL--LYVTrpgqIIANAKLYRTVSAIVNIFRSIPFIILLVW----MIPFTRVIVGTSIGLQAAI 93
Cdd:TIGR02138 68 TLITSLIALLIAVPVGIGiaIFLS----EIAPKRVRSVLKPVVELLAGIPSVVYGFWglfvLVPFLKPHFQPFLGSNLGL 143
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16128191 94 VPLTVGAA------------PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITL 154
Cdd:TIGR02138 144 IPLFGGPIltagivlaimilPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGL 216
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
9-155 |
6.70e-08 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 52.09 E-value: 6.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTR-PGQiianaKLYRTVSAIVniFRSIPFIILLVWMI---------PF 78
Cdd:COG1178 52 LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDfPGR-----RLLRWLLLLP--LALPPYVVALAWIAlfgpngllnTL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 79 TRVIVGTSI----GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITL 154
Cdd:COG1178 125 LRALFGLEPpdiyGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVF 204
|
.
gi 16128191 155 I 155
Cdd:COG1178 205 L 205
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
9-156 |
5.05e-07 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 48.95 E-value: 5.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiianaKLYRTVSAIVNIFRSIPFIILLVWMIPFTrVIVGTSIG 88
Cdd:COG1177 59 LLDALLNSLLIALLSTLLATVLGTPAALALARYRF-------RGRRLLLALLLLPLVVPGIVLGVALLLLF-SALGLSGG 130
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16128191 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLIT 156
Cdd:COG1177 131 LWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTL 198
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
9-159 |
7.80e-07 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 49.00 E-value: 7.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqiianAKLYRTVSAIVNIFRSIPFIIL-LVWMIPFTRVIVGTSI 87
Cdd:COG1178 336 LLRALLNSLLLALLAALLAVLLALLLAYLVRRRR-------GRLARLLDRLAMLPYAVPGIVLgLGLLLLFNRPLPLLLY 408
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16128191 88 GLQAAIV-PLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1178 409 GTLAILVlAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMK 481
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
102-159 |
1.11e-06 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 47.83 E-value: 1.11e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 16128191 102 PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1176 167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALG 224
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
68-160 |
1.29e-06 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 47.78 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 68 FIILLVWMIPFTRVIVGT-----SIGL----QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVL 138
Cdd:COG0395 114 LLILATLMIPGQVLLIPLyllfrQLGLlntyWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIV 193
|
90 100
....*....|....*....|..
gi 16128191 139 LPEALPGLvnaATITLITLVGY 160
Cdd:COG0395 194 LPLSKPAL---ATVAIFTFIGA 212
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
101-155 |
1.50e-06 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 47.69 E-value: 1.50e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 16128191 101 APFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLI 155
Cdd:PRK15050 173 TPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
|
|
| glnP |
PRK09494 |
glutamine ABC transporter permease protein; Reviewed |
15-143 |
2.53e-06 |
|
glutamine ABC transporter permease protein; Reviewed
Pssm-ID: 181907 [Multi-domain] Cd Length: 219 Bit Score: 46.59 E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 15 ETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqIIANAKLYRTVSAIVNIFRSIPfIILLVWMIPFTRVIVGTSI---GLQA 91
Cdd:PRK09494 17 EGAKMTLWISVLGLAGGLVIGLLAGFAR---AYGGWIANHIALVFIELIRGTP-IVVQVMFIYFALPMAFNDLridPFTA 92
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 16128191 92 AIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEAL 143
Cdd:PRK09494 93 AVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLAL 144
|
|
| PRK10952 |
PRK10952 |
proline/glycine betaine ABC transporter permease ProW; |
16-155 |
4.77e-06 |
|
proline/glycine betaine ABC transporter permease ProW;
Pssm-ID: 236805 Cd Length: 355 Bit Score: 46.24 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 16 TLAMTFVSGFFGFVIGLPVGVLLyvtrpgqiianAKLYRTVSAIVNIFRSIPFIILLVWMIPftrVIVGTSIGLQAAIVP 95
Cdd:PRK10952 149 TLALVLTALLFCIVIGLPLGIWL-----------ARSPRAAKIIRPLLDAMQTTPAFVYLVP---IVMLFGIGNVPGVVV 214
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 96 LTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLI 155
Cdd:PRK10952 215 TIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLM 274
|
|
| PRK15107 |
PRK15107 |
glutamate/aspartate ABC transporter permease GltK; |
4-147 |
6.59e-06 |
|
glutamate/aspartate ABC transporter permease GltK;
Pssm-ID: 185062 [Multi-domain] Cd Length: 224 Bit Score: 45.21 E-value: 6.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 4 PMMWLLVRGVWETLAMTFVSgffgFVIGLPVGVLLYVTRPGQIIANAKLYRtvsAIVNIFRSIPFIILLVW---MIP-FT 79
Cdd:PRK15107 11 PSLPYLLDGLVITLKITVTA----VVIGILWGTILAVMRLSSFKPVAWFAK---AYVNVFRSIPLVMVLLWfylIVPgFL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128191 80 RVIVG----TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:PRK15107 84 QNVLGlspkTDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMV 155
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
8-159 |
3.62e-05 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 43.52 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqiiaNAKLYRTVSAIVNIFRSIP---FIILLVW---------- 74
Cdd:COG0601 90 LIAERLPVTLELALLALLLALLIGIPLGILAALRR------GSWLDRLITVLALLGISIPsfwLGLLLILlfavklgwlp 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 75 ---MIPFTRVIVGtsiGLQAAIVP---LTVGAAPFIARMVENALLEIptgL----IEASRAMGATPMQIVRKVLLPEALP 144
Cdd:COG0601 164 vsgRVSPWEDFLD---ALRHLILPaltLALGSLAGIARLTRSSMLEV---LgqdyVRTARAKGLSERRVLLRHALRNALI 237
|
170
....*....|....*
gi 16128191 145 GLVNAATITLITLVG 159
Cdd:COG0601 238 PVVTVLGLQLGGLLG 252
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
74-159 |
3.72e-04 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 40.51 E-value: 3.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 74 WMIPFTRVIVGTSIGLQAAivpLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATIT 153
Cdd:PRK10971 128 WLAKFDIKVTYTWLGIAVA---MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALS 204
|
....*.
gi 16128191 154 LITLVG 159
Cdd:PRK10971 205 FTRSLG 210
|
|
| HEQRo_perm_3TM |
TIGR01726 |
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ... |
6-74 |
1.89e-03 |
|
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130787 [Multi-domain] Cd Length: 99 Bit Score: 36.36 E-value: 1.89e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128191 6 MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVtrpgqiiANAKLYRTVSAIVNIFRSIPFIILLVW 74
Cdd:TIGR01726 2 LPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLS-------GNRPLRWIATVYVELFRGTPLLVQLFF 63
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
85-153 |
4.01e-03 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 37.30 E-value: 4.01e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16128191 85 TSIGLQAAIVPLTVGAA------PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATIT 153
Cdd:CHL00187 127 SHLGIQIVFTKLGVLLAmifvsfPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
59-152 |
8.34e-03 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 36.18 E-value: 8.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128191 59 IVNIFRSIPFIILLVWMIPftrvIVGTsiGLQAAIVPLTVGAAPFIARMVENALLEIPT-GLIEASRAMGATPMQIVRKV 137
Cdd:PRK10417 105 VADMFMTFPTSILAFFMVG----VLGT--GLTNVIIAIALSHWAWYARMVRSLVISLRQrEFVLAARLSGAGHVRVFIDH 178
|
90
....*....|....*
gi 16128191 138 LLPEALPGLVNAATI 152
Cdd:PRK10417 179 LLPAVIPQLLVLATL 193
|
|
| |
