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Conserved domains on  [gi|16128482|ref|NP_415031|]
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PF15631 family protein YbbC [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

YbbC/YhhH family protein( domain architecture ID 10634926)

YbbC/YhhH family protein similar to Escherichia coli uncharacterized protein YbbC that is part of the rhsD-ybbC operon, is repressed by H-NS, and induced by LeuO

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Imm-NTF2-2 pfam15631
NTF2 fold immunity protein; A predicted immunity protein of the NTF2 fold. Proteins containing ...
 55-122 3.57e-26

NTF2 fold immunity protein; A predicted immunity protein of the NTF2 fold. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the Tox-NucA family. This domain is also fused to ankyrin repeats and the pfam14025.


:

Pssm-ID: 406142  Cd Length: 72  Bit Score: 92.86  E-value: 3.57e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128482    55 MAIQLAEIYVRYRYGERIAEEEKPYLITELPDS-WVVEGAKLPYEVA---GGVFIIEINKKNGCVLNFLHSK 122
Cdd:pfam15631   1 TAIKIAEIILAYIYGRKQIYEEKPYVITLLDDSyWVVEGTLPPGWLHtakGGVFYIEIDKNDGKVLNVYHGK 72
 
Name Accession Description Interval E-value
Imm-NTF2-2 pfam15631
NTF2 fold immunity protein; A predicted immunity protein of the NTF2 fold. Proteins containing ...
 55-122 3.57e-26

NTF2 fold immunity protein; A predicted immunity protein of the NTF2 fold. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the Tox-NucA family. This domain is also fused to ankyrin repeats and the pfam14025.


Pssm-ID: 406142  Cd Length: 72  Bit Score: 92.86  E-value: 3.57e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128482    55 MAIQLAEIYVRYRYGERIAEEEKPYLITELPDS-WVVEGAKLPYEVA---GGVFIIEINKKNGCVLNFLHSK 122
Cdd:pfam15631   1 TAIKIAEIILAYIYGRKQIYEEKPYVITLLDDSyWVVEGTLPPGWLHtakGGVFYIEIDKNDGKVLNVYHGK 72
 
Name Accession Description Interval E-value
Imm-NTF2-2 pfam15631
NTF2 fold immunity protein; A predicted immunity protein of the NTF2 fold. Proteins containing ...
 55-122 3.57e-26

NTF2 fold immunity protein; A predicted immunity protein of the NTF2 fold. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the Tox-NucA family. This domain is also fused to ankyrin repeats and the pfam14025.


Pssm-ID: 406142  Cd Length: 72  Bit Score: 92.86  E-value: 3.57e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128482    55 MAIQLAEIYVRYRYGERIAEEEKPYLITELPDS-WVVEGAKLPYEVA---GGVFIIEINKKNGCVLNFLHSK 122
Cdd:pfam15631   1 TAIKIAEIILAYIYGRKQIYEEKPYVITLLDDSyWVVEGTLPPGWLHtakGGVFYIEIDKNDGKVLNVYHGK 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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