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Conserved domains on  [gi|16128573|ref|NP_415122|]
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ferric enterobactin ABC transporter membrane subunit FebD [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Fe(3+)-siderophore ABC transporter permease( domain architecture ID 10793393)

Fe(3+)-siderophore ABC transporter permease is part of the binding-protein-dependent transport system for ferric enterobactin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
1-334 4.90e-174

Fe(3+)-siderophore ABC transporter permease;


:

Pssm-ID: 182464  Cd Length: 335  Bit Score: 485.75  E-value: 4.90e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573    1 MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGAL 80
Cdd:PRK10441   1 MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEALSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   81 MQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA 160
Cdd:PRK10441  81 MQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  161 VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLI 240
Cdd:PRK10441 161 VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  241 GLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAP 320
Cdd:PRK10441 241 GLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGELRVSVVSAFIGAP 320

                        330
                 ....*....|....
gi 16128573  321 VLIFLVRRKTRGGA 334
Cdd:PRK10441 321 VLIFLVRRKTRGGA 334
 
Name Accession Description Interval E-value
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
1-334 4.90e-174

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 485.75  E-value: 4.90e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573    1 MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGAL 80
Cdd:PRK10441   1 MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEALSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   81 MQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA 160
Cdd:PRK10441  81 MQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  161 VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLI 240
Cdd:PRK10441 161 VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  241 GLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAP 320
Cdd:PRK10441 241 GLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGELRVSVVSAFIGAP 320

                        330
                 ....*....|....
gi 16128573  321 VLIFLVRRKTRGGA 334
Cdd:PRK10441 321 VLIFLVRRKTRGGA 334
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 27-329 6.28e-81

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 248.06  E-value: 6.28e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  27 SLLIGAKSLPASVVLEAFSGTCQSA-DCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAI 105
Cdd:COG0609   1 SLSLGAVPISLSDVLRALLGPDGDPtADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 106 VLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGqLSPVRLTLAGVALAAVLEGLTSGI-ALLNPDVYDQLRFWQ 184
Cdd:COG0609  81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGG-LSPLRLVLAGVAVSALFSALTSLLlLLADPEQLRSIVFWL 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 185 AGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGL 264
Cdd:COG0609 160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16128573 265 MMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIV-PGELRVSVVSAFIGAPVLIFLVRRK 329
Cdd:COG0609 240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILaPAELPVGIVTALIGAPFFLYLLRRR 305
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 27-328 1.63e-71

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 224.33  E-value: 1.63e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573    27 SLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIV 106
Cdd:pfam01032   9 SLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISSGAALGAV 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   107 LGAALFGYSSAQEQLAMAFAGALVASLIVaFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALL-NPDVYDQLRFWQA 185
Cdd:pfam01032  89 LAILLGGSLSLFALPLAAFIGALLAALLV-YFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLlNPEALQSILFWLM 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   186 GSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLM 265
Cdd:pfam01032 168 GSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGPIGFVGLI 247

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128573   266 MPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIV-PGELRVSVVSAFIGAPVLIFLVRR 328
Cdd:pfam01032 248 VPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILsPYELPVGIVTALIGAPFFIYLLLR 311
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 81-326 7.54e-48

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 161.57  E-value: 7.54e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  81 MQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGgqLSPVRLTLAGVALAA 160
Cdd:cd06550  18 LQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG--LSPSKLILIGIVLSA 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 161 VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLI 240
Cdd:cd06550  96 FFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLL 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 241 GLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAP 320
Cdd:cd06550 176 LLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLLPSELPVGPVTALLGAP 255


                ....*.
gi 16128573 321 VLIFLV 326
Cdd:cd06550 256 YFLYLL 261
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 55-332 3.59e-34

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 127.66  E-value: 3.59e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573    55 IVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALfgySSAQEQLAMAFAGALVAsLI 134
Cdd:TIGR03869  48 IVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVL---GVAVLLPVAAFAGALLA-LA 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   135 VAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNP--DVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALL 212
Cdd:TIGR03869 124 ATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSAtgDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLA 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   213 LSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPAL 292
Cdd:TIGR03869 204 SGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVF 283

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 16128573   293 LLFADIIGR-VIVPGELRVSVVSAFIGAPVLIFLVRRKTRG 332
Cdd:TIGR03869 284 LVWADTLARtVFAPRELPVGIITALIGAPVFAVLLYRSRSG 324
 
Name Accession Description Interval E-value
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
1-334 4.90e-174

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 485.75  E-value: 4.90e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573    1 MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGAL 80
Cdd:PRK10441   1 MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEALSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   81 MQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA 160
Cdd:PRK10441  81 MQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  161 VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLI 240
Cdd:PRK10441 161 VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  241 GLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAP 320
Cdd:PRK10441 241 GLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGELRVSVVSAFIGAP 320

                        330
                 ....*....|....
gi 16128573  321 VLIFLVRRKTRGGA 334
Cdd:PRK10441 321 VLIFLVRRKTRGGA 334
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 27-329 6.28e-81

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 248.06  E-value: 6.28e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  27 SLLIGAKSLPASVVLEAFSGTCQSA-DCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAI 105
Cdd:COG0609   1 SLSLGAVPISLSDVLRALLGPDGDPtADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 106 VLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGqLSPVRLTLAGVALAAVLEGLTSGI-ALLNPDVYDQLRFWQ 184
Cdd:COG0609  81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGG-LSPLRLVLAGVAVSALFSALTSLLlLLADPEQLRSIVFWL 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 185 AGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGL 264
Cdd:COG0609 160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16128573 265 MMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIV-PGELRVSVVSAFIGAPVLIFLVRRK 329
Cdd:COG0609 240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILaPAELPVGIVTALIGAPFFLYLLRRR 305
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 27-328 1.63e-71

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 224.33  E-value: 1.63e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573    27 SLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIV 106
Cdd:pfam01032   9 SLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISSGAALGAV 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   107 LGAALFGYSSAQEQLAMAFAGALVASLIVaFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALL-NPDVYDQLRFWQA 185
Cdd:pfam01032  89 LAILLGGSLSLFALPLAAFIGALLAALLV-YFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLlNPEALQSILFWLM 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   186 GSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLM 265
Cdd:pfam01032 168 GSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGPIGFVGLI 247

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128573   266 MPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIV-PGELRVSVVSAFIGAPVLIFLVRR 328
Cdd:pfam01032 248 VPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILsPYELPVGIVTALIGAPFFIYLLLR 311
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 81-326 7.54e-48

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 161.57  E-value: 7.54e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  81 MQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGgqLSPVRLTLAGVALAA 160
Cdd:cd06550  18 LQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG--LSPSKLILIGIVLSA 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 161 VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLI 240
Cdd:cd06550  96 FFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLL 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 241 GLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAP 320
Cdd:cd06550 176 LLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLLPSELPVGPVTALLGAP 255


                ....*.
gi 16128573 321 VLIFLV 326
Cdd:cd06550 256 YFLYLL 261
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
49-331 2.61e-46

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 166.17  E-value: 2.61e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   49 QSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGA 128
Cdd:PRK10577 386 SGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGA 465

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  129 LVASLIVAFTGSQGGgqLSPVRLTLAGVALAAVLEGLTS-GIALLNPDVYdQLRFWQAGSLDIRNLHTLKVVLIPVLIAG 207
Cdd:PRK10577 466 LAALALILLLARRGG--FAPERLLLTGIALSALFTALIQlLLASGDPRAA-QLLTWLSGSTYGVTWAQALPLLIVAVLLL 542

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  208 ATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLL 287
Cdd:PRK10577 543 ALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAAL 622

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 16128573  288 ATPALLLFADIIGRVIV-PGELRVSVVSAFIGAPVLIFLVRRKTR 331
Cdd:PRK10577 623 LGALLMVLADWLGRTLLfPYQIPAGLLAALIGAPYFLWLLRRSRR 667
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
1-328 4.09e-45

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 163.09  E-value: 4.09e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573    1 MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGAL 80
Cdd:PRK10577   3 RLMSRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLLLHYSRLPRLAIALLVGAALGLAGAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   81 MQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGsqGGGQLSPVRLTLAGVALAA 160
Cdd:PRK10577  83 LQQVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALASQLAAFAGGLLAAALVFALA--GGKRLSPLRLVLAGMVVSL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  161 VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLI 240
Cdd:PRK10577 161 YLGALTTLLLLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  241 GLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIVPG---ELRVSVVSAFI 317
Cdd:PRK10577 241 ALALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAGVggeLLPTGAVTALI 320

                        330
                 ....*....|.
gi 16128573  318 GAPVLIFLVRR 328
Cdd:PRK10577 321 GAPLLLWLLPR 331
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 27-333 6.63e-43

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 151.04  E-value: 6.63e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  27 SLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIV 106
Cdd:COG4779  40 ALTLGDYPLSPGDVLRALLGEGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTRNPLASPDIIGITAGASAGAV 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 107 LGAALFGYSSAQEQLAmAFAGALVASLIVAFTGSQGGgqLSPVRLTLAGVALAAVLEGLTSGIaLLNPDVYD--QLRFWQ 184
Cdd:COG4779 120 AAIVVLGGSGLAVALG-ALAGGLATALLVYLLAWRGG--VSGYRLILVGIGVSAMLTAVNSYL-LTRADLEDaqSAAVWL 195

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 185 AGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGL 264
Cdd:COG4779 196 TGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALAAVATAAAGPIAFVAL 275

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 265 MMPHMARWLVGAdHRWSLPVTLLATPALLLFADIIGR-VIVPGELRVSVVSAFIGAPVLIFLVRRKTRGG 333
Cdd:COG4779 276 AAPQIARRLTRS-PGPPLLPSALVGALLLLAADLVAQhLLAPVQLPVGVVTGALGGPYLLWLLIRENRRG 344
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
55-330 2.09e-41

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 146.76  E-value: 2.09e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   55 IVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLA-MAFAGALVASL 133
Cdd:PRK11228  46 LVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSPTPFAGYSLAfIAACGGGLSWL 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  134 IVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLL 213
Cdd:PRK11228 126 LVMTAGGGWRHTHDRNRLILAGIALSALCMALTRITLLLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLL 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  214 SRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALL 293
Cdd:PRK11228 206 ANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLM 285

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 16128573  294 LFADIIGRVIV-PGELRVSVVSAFIGAPVLIFLVRRKT 330
Cdd:PRK11228 286 LLADLLARALAfPGELPAGAVLALIGAPCFVWLARRRG 323
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
27-328 2.28e-39

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 141.34  E-value: 2.28e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   27 SLLIGAKSLPASVVLEAFSGtcQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIV 106
Cdd:PRK09777  20 SLRMGVIPLPWRALLTDWQA--GDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  107 LGAALFGYSSAQEQLAMAFAGALVASLIVAFTGsqggGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQLRFWQAG 186
Cdd:PRK09777  98 GALLLFPSLPVMWLPLLAFIGGMAGLILLKMLA----GTHQPMKLALTGVALSALWASLTDYLMLSRPQDINNALLWLTG 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  187 SLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLMM 266
Cdd:PRK09777 174 SLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLVV 253

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16128573  267 PHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIVPG-ELRVSVVSAFIGAPVLIFLVRR 328
Cdd:PRK09777 254 PHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPlELPAGVLTAIIGAPWFFWLLVR 316
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 55-333 2.14e-36

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 133.44  E-value: 2.14e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  55 IVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAM-AFAGALVASL 133
Cdd:COG4139  50 FVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGISNGAGVGLVLVVLLGGGLLPPWLLSLaAIAGALLVTL 129

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 134 IVAFTGSQGggqLSPVRLTLAGVALAAVLEGLTSGIALLNPDV-YDQLRFWQAGSL---DIRNLhTLKVVLIPVLIAgat 209
Cdd:COG4139 130 LLLAFARRR---LSNARLLLIGVALGIICSAIMTWAVYFSSSLdLRQLMYWMMGSFggvDWRQL-WLLLALLPVLLW--- 202

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573 210 ALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLAT 289
Cdd:COG4139 203 LCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAG 282

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*
gi 16128573 290 PALLLFADIIGRVIVP-GELRVSVVSAFIGAPVLIFLVRRKTRGG 333
Cdd:COG4139 283 AALLLLADIIARLALSsAELPIGVVTATLGAPVFIWLLLRRRKIR 327
btuC PRK09535
cobalamin ABC transporter permease BtuC;
6-329 3.03e-34

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 128.71  E-value: 3.03e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573    6 AVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLT 85
Cdd:PRK09535  41 ALLNAVAVPVGVAVTTHGVPVLSVGLSLPAPDLEYASPFSFAVPETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFF 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   86 RNPLADPGLLGVNAGASF----AIVLGAAL-FGYSsaqeqlAMAFAGALVASLIVAFTGSQGGGqlSPV-RLTLAGVALA 159
Cdd:PRK09535 121 RNPMADPSIIGVSSGAAVgavaAIVLPLAVpFGLQ------AAAFAGALVAAFGVYAIATENGR--TPVaTLLLAGVAVQ 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  160 AVLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQL 239
Cdd:PRK09535 193 TFLGAVISYLLLHSGESLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKR 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  240 IGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRViVPGELRVSVVSAFIGA 319
Cdd:PRK09535 273 LLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLVATDTVARS-GPAEVPVGIVTAALGA 351

                        330
                 ....*....|
gi 16128573  320 PVLIFLVRRK 329
Cdd:PRK09535 352 PFFLYLLRTR 361
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 54-331 3.23e-34

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 127.76  E-value: 3.23e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   54 TIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAM-AFAGALVAS 132
Cdd:PRK03784  52 LFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPPWALSLcAIAGALLIT 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  133 LIVAFTGSQGggQLSPVRLTLAGVALaavleGLTSGiALLNPDVY-------DQLRFWQAGSL---DIRnLHTLKVVLIP 202
Cdd:PRK03784 132 LILLRFARRH--RLSTSRLLLAGVAL-----GIICS-ALMTWAVYfstsldlRQLMYWMMGGFggvDWR-QSWLMLALLP 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  203 VLIAGATAlllSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSL 282
Cdd:PRK03784 203 VLIWLCCQ---GRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL 279

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 16128573  283 PVTLLATPALLLFADIIGRVIVP-GELRVSVVSAFIGAPVLIFLVRRKTR 331
Cdd:PRK03784 280 PGCALAGASLLLLADIVARLALAsAELPIGVVTATLGAPVFIWLLLRSHR 329
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 55-332 3.59e-34

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 127.66  E-value: 3.59e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573    55 IVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALfgySSAQEQLAMAFAGALVAsLI 134
Cdd:TIGR03869  48 IVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVL---GVAVLLPVAAFAGALLA-LA 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   135 VAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNP--DVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALL 212
Cdd:TIGR03869 124 ATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSAtgDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLA 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   213 LSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPAL 292
Cdd:TIGR03869 204 SGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVF 283

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 16128573   293 LLFADIIGR-VIVPGELRVSVVSAFIGAPVLIFLVRRKTRG 332
Cdd:TIGR03869 284 LVWADTLARtVFAPRELPVGIITALIGAPVFAVLLYRSRSG 324
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
27-332 1.76e-25

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 104.41  E-value: 1.76e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573   27 SLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIV 106
Cdd:PRK10440  26 GLRSGAVTLETSQVFAALMGDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  107 LGAALFGYSSAQEQLAmAFAGALVASLIVAFTGSQGGGQlsPVRLTLAGVALAAVLEGLTSGIaLLNPDVYDQLR--FWQ 184
Cdd:PRK10440 106 VAMVLFGQDLTAIALA-AMAGGIVTSLLVWLLAWRNGID--TFRLIIIGIGVRAMLVAFNTWL-LLKASLETALTagLWN 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128573  185 AGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGL 264
Cdd:PRK10440 182 AGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLTAAATALAGPISFIAL 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128573  265 MMPHMARWLVGADhRWSLPVTLLATPALLLFADIIG-RVIVPGELRVSVVSAFIGAPVLIFLVRRKTRG 332
Cdd:PRK10440 262 VAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAqQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRK 329
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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