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Concise Results
Standard Results
Full Results
peptidoglycan DD-transpeptidase MrdA [Escherichia coli str. K-12 substr. MG1655]
Protein Classification
penicillin-binding protein 2 ( domain architecture ID 11484953 )
penicillin-binding protein (PBP) 2 is a membrane-associated enzyme that is involved in the synthesis of cross-linked peptidoglycan
List of domain hits
Name
Accession
Description
Interval
E-value
PRK10795
PRK10795 penicillin-binding protein 2; Provisional
1-632
0e+00
penicillin-binding protein 2; Provisional
Pssm-ID: 236761 [Multi-domain]
Cd Length: 634
Bit Score: 1392.19
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 1 M KLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNG I PLA 80
Cdd:PRK10795 2 K KLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNG T PLA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 81 LNRTIYQ I EMMPEKVDN V QQTLDALRSVVDLTDDDIAAFRKERARS H RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 160
Cdd:PRK10795 82 LNRTIYQ L EMMPEKVDN L QQTLDALRSVVDLTDDDIAAFRKERARS R RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 161 Y K RRYYPYGSALTHVIGYVSKINDKDVERL NND GKLANYAATHDIGKLGIERYYEDVLHG Q TGYEEVEVNNRGRVIRQL K 240
Cdd:PRK10795 162 Y Q RRYYPYGSALTHVIGYVSKINDKDVERL DKE GKLANYAATHDIGKLGIERYYEDVLHG K TGYEEVEVNNRGRVIRQL H 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 241 E V PPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGG V LALVSTPSYDPNLFVDGISSKDYS A LLNDPN T PL V NR 320
Cdd:PRK10795 242 E Q PPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGG I LALVSTPSYDPNLFVDGISSKDYS G LLNDPN R PL I NR 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 321 ATQGVYPPASTVKPYVAVSALSAGVITRNT T LFDPGWWQLPGSEKRYRDWKKWGHGRLNVT R SLEESADTFFYQVAYDMG 400
Cdd:PRK10795 322 ATQGVYPPASTVKPYVAVSALSAGVITRNT S LFDPGWWQLPGSEKRYRDWKKWGHGRLNVT K SLEESADTFFYQVAYDMG 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 401 IDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALM I LINDGIVKV 480
Cdd:PRK10795 402 IDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALM T LINDGIVKV 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 481 PHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWE L AKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYN 560
Cdd:PRK10795 482 PHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWE I AKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYN 561
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128618 561 AHKIAERLRDHKLMTAFAPYNNPQVAVA M ILENGGAGPAVGT L MRQILDHIMLGDNNTDLPAENPAVAAAED 632
Cdd:PRK10795 562 AHKIAERLRDHKLMTAFAPYNNPQVAVA I ILENGGAGPAVGT I MRQILDHIMLGDNNTDLPAENPAVAAAED 633
Name
Accession
Description
Interval
E-value
PRK10795
PRK10795 penicillin-binding protein 2; Provisional
1-632
0e+00
penicillin-binding protein 2; Provisional
Pssm-ID: 236761 [Multi-domain]
Cd Length: 634
Bit Score: 1392.19
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 1 M KLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNG I PLA 80
Cdd:PRK10795 2 K KLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNG T PLA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 81 LNRTIYQ I EMMPEKVDN V QQTLDALRSVVDLTDDDIAAFRKERARS H RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 160
Cdd:PRK10795 82 LNRTIYQ L EMMPEKVDN L QQTLDALRSVVDLTDDDIAAFRKERARS R RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 161 Y K RRYYPYGSALTHVIGYVSKINDKDVERL NND GKLANYAATHDIGKLGIERYYEDVLHG Q TGYEEVEVNNRGRVIRQL K 240
Cdd:PRK10795 162 Y Q RRYYPYGSALTHVIGYVSKINDKDVERL DKE GKLANYAATHDIGKLGIERYYEDVLHG K TGYEEVEVNNRGRVIRQL H 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 241 E V PPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGG V LALVSTPSYDPNLFVDGISSKDYS A LLNDPN T PL V NR 320
Cdd:PRK10795 242 E Q PPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGG I LALVSTPSYDPNLFVDGISSKDYS G LLNDPN R PL I NR 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 321 ATQGVYPPASTVKPYVAVSALSAGVITRNT T LFDPGWWQLPGSEKRYRDWKKWGHGRLNVT R SLEESADTFFYQVAYDMG 400
Cdd:PRK10795 322 ATQGVYPPASTVKPYVAVSALSAGVITRNT S LFDPGWWQLPGSEKRYRDWKKWGHGRLNVT K SLEESADTFFYQVAYDMG 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 401 IDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALM I LINDGIVKV 480
Cdd:PRK10795 402 IDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALM T LINDGIVKV 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 481 PHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWE L AKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYN 560
Cdd:PRK10795 482 PHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWE I AKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYN 561
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128618 561 AHKIAERLRDHKLMTAFAPYNNPQVAVA M ILENGGAGPAVGT L MRQILDHIMLGDNNTDLPAENPAVAAAED 632
Cdd:PRK10795 562 AHKIAERLRDHKLMTAFAPYNNPQVAVA I ILENGGAGPAVGT I MRQILDHIMLGDNNTDLPAENPAVAAAED 633
pbp2_mrdA
TIGR03423 penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 ...
19-614
0e+00
penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Pssm-ID: 274573 [Multi-domain]
Cd Length: 592
Bit Score: 968.14
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 19 RRALV AFLGI L L L T GVL I A N L YN LQ IV R FTD Y Q T R S NE NRI K LVPI A P S RG I I Y DRNG IP LA L NR TIYQI E MM PEKVD NV 98
Cdd:TIGR03423 1 RRALV LGGLV L A L F GVL A A R L FY LQ VI R GEE Y A T L S ED NRI R LVPI P P P RG L I L DRNG VL LA D NR PSFSL E IV PEKVD DL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 99 QQ TLD A L RSVV DL TDD DIA A F R KE RA RS H RF TS IP V K TN LTE VQ VARFAVNQYR F PGVE VKGYKR RYYPYG SALT HV I GY 178
Cdd:TIGR03423 81 DA TLD R L AKLL DL DPE DIA R F L KE LK RS R RF EP IP L K SD LTE EE VARFAVNQYR L PGVE IEARLK RYYPYG ELAA HV L GY 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 179 V SK IN DK D V ERL NN dgkl ANYA ATHD IGK L GIE R YYED V L H G QT GY E EVEVN N RGRVIR Q L KE VPP QA G H D IY LT L D LK L 258
Cdd:TIGR03423 161 V GE IN EE D L ERL EP ---- ANYA GGDY IGK S GIE K YYED E L R G KP GY R EVEVN A RGRVIR T L SR VPP VP G K D LV LT I D AR L 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 259 QQ YI E TL L A G S R A AVVV T DPRTG GV LA L VSTPS Y DPNLFVDGISSKDY S ALLNDP NT PL V NRA T QGVYPP A ST V KP Y VA V 338
Cdd:TIGR03423 237 QQ AA E KA L G G R R G AVVV M DPRTG EI LA M VSTPS F DPNLFVDGISSKDY K ALLNDP DR PL L NRA I QGVYPP G ST F KP V VA L 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 339 S AL SA GVIT RN T TLFD PG WW QL P G se K R Y R D WK KW GHGR LNVTRSL EES A D TF FYQ V A YDM GID RLS E WMGK FG Y G HY TG 418
Cdd:TIGR03423 317 A AL EE GVIT PE T RIYC PG YF QL G G -- R R F R C WK RG GHGR VDLRKAI EES C D VY FYQ L A LRL GID KIA E YAKR FG F G QK TG 394
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 419 IDL AE E R SG NM P T REWK Q KRF KK PWY Q GDT IP V G IGQGY WTA TP I Q MSK A LMI L I N D G IVKV PHL LM S TAE - DG KQ V PWV 497
Cdd:TIGR03423 395 IDL PG E K SG LV P S REWK R KRF GQ PWY P GDT LN V S IGQGY VLV TP L Q LAV A TAA L A N G G KLYK PHL VK S IED p DG GV V RRT 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 498 Q P HEPPVGD I HSGYWELAKD GM YG V A N R P N GTA HKYFASA PYK I A A K S GTAQV FG LK AN E T Y N A HK I A ERLRDH K L MT AF 577
Cdd:TIGR03423 475 E P EVLRPLP I SPENLDVVRE GM RD V V N G P G GTA RRARLGL PYK M A G K T GTAQV VS LK QG E K Y D A EQ I P ERLRDH A L FV AF 554
570 580 590
....*....|....*....|....*....|....*...
gi 16128618 578 APY N NP QV AVA M I L E N GG A G PAV - GTLM R Q I L D HIM LG 614
Cdd:TIGR03423 555 APY D NP KI AVA V I V E H GG G G SSA a APIA R K I M D AYL LG 592
FtsI
COG0768 Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell ...
11-610
0e+00
Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell cycle control, cell division, chromosome partitioning, Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440531 [Multi-domain]
Cd Length: 568
Bit Score: 632.24
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 11 TA E SA LF V RR A L VA FL GI LLL TGV L IAN L YN LQ I V RFTD Y QTRSN ENRI KL VPI APS RG I IYDRNG IP LA L N RTI Y QIEM 90
Cdd:COG0768 4 KK E KR LF R RR L L LL FL LV LLL FLL L VGR L FY LQ V V EGDE Y AELAE ENRI RT VPI PAP RG L IYDRNG NV LA T N VPV Y SLYA 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 91 M PE K V DNVQQ T LDA L RSVVD L TDDDIAAFR K ERA R S hrft SIPV K T NL TEVQV AR fa VNQYRF PGV E V KGYKR RYYPYG S 170
Cdd:COG0768 84 D PE E V KDPEE T AEK L AKLLG L DPEELRKKL K KKS R F ---- PVYL K R NL SPEEA AR -- IRALKL PGV Y V EAEYK RYYPYG E 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 171 ALT HV I GYV SK IN DK D verlnndgklanyaath D IGK L G I E RY YED V L H G QT G YEE VEV NN RGRVIR Q L - K E V PP QA G H D 249
Cdd:COG0768 158 LAA HV L GYV GE IN GG D ----------------- G IGK S G L E KA YED L L R G TP G KRR VEV DA RGRVIR D L g E E K PP VP G K D 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 250 IY LT L D LK LQ QYI E TL L AGS ------- RA AVVV T DP R TG GV LA LV S T PS Y DPNLFV D G isskdysallnd P NT PL V NRA T 322
Cdd:COG0768 221 LV LT I D SD LQ KIA E EA L KKA veeykak SG AVVV M DP K TG EI LA MA S Y PS F DPNLFV G G ------------ P DE PL R NRA V 288
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 323 QG V Y P P A ST V KP YV A VS AL SA GVIT RN TT LFD PG WWQLP G se KRY RDW KKW GHG R L NV T RS L EE S ADTF FY QV A YDM GID 402
Cdd:COG0768 289 QG T Y E P G ST F KP FT A AA AL EE GVIT PD TT FDC PG YYRVG G -- RTI RDW DRG GHG T L TL T EA L AK S SNVG FY KL A LRL GID 366
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 403 R L SEWMG KFG Y G HY TGIDL AE E R SG NM P TR ewkqkrfk K P WY Q G D T IPVG IGQG y WTA TP I Q MSK A LMILI N D G IVKV PH 482
Cdd:COG0768 367 K L YDYLK KFG L G QK TGIDL PG E A SG LL P SP -------- K R WY P G E T ATMS IGQG - LSV TP L Q LAQ A YAAIA N G G VLVK PH 437
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 483 L LMSTAEDGKQ V PWVQ P HEP - P V gd I HSGYW E LAKD GM Y GV A N R P N GTA HKY f A SAP Y KI A A K S GTAQV FGLKANET Y NA 561
Cdd:COG0768 438 L VKEIVDPDGE V VKEE P EVL r R V -- I SPETA E TVRE GM E GV V N E P G GTA RRA - A IPG Y RV A G K T GTAQV VDIGNGGY Y KG 514
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 16128618 562 HK IA erlrdhk LMTA FAP YN NP QV AVA MIL EN G G -------- A G P AVGTL M RQI L DH 610
Cdd:COG0768 515 RH IA ------- SFVG FAP AD NP RY AVA VVV EN P G ggayggtv A A P VFREI M EAY L RL 564
Transpeptidase
pfam00905 Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss: ...
271-609
1.11e-88
Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family.
Pssm-ID: 425939 [Multi-domain]
Cd Length: 296
Bit Score: 277.76
E-value: 1.11e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 271 AAV VV T DP R TG G VLA L V ST PSYDPN L F vdgisskdysallndp NT PL V NRA TQGV Y P P A ST V KP YV A VS AL SA GV ITRNT 350
Cdd:pfam00905 1 GSA VV L DP K TG E VLA M V GK PSYDPN G F ---------------- IG PL R NRA VTSR Y E P G ST F KP FT A LA AL DN GV LKPDE 64
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 351 T L FD PGWW Q LP G se K RYR DW KKWGH G RLNVTRS LE E S ADTFFYQV A YDM G I D R L SEWMG KFGYG HY TGI D L AE E RS G NMP 430
Cdd:pfam00905 65 T I FD WPGK Q QG G -- K SIG DW NQDQV G IGTLRQA LE Y S SNWYMQKL A QKL G A D K L RSYLK KFGYG NK TGI G L PG E NA G YLT 142
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 431 TR ewkqkrfkkp W YQ G D T IPV GIG qgy W T A TP I Q MSK A LMILI N D G IVKV PHL LM S T aedgkq VPW V Q P HEPPVGD I HSG 510
Cdd:pfam00905 143 PY ---------- W LE G A T ASF GIG --- L T I TP L Q QAQ A YAAIA N G G KLVP PHL VK S I ------ EDK V D P KVLNKLP I SKS 203
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 511 YW E LA KD GMYG V A N RPN GT AH ky F A SAP YK I A A K S GTAQV F G L K ANET Y NAHK iaerlrd HKLMTAF AP YN NP QV A V A MI 590
Cdd:pfam00905 204 TA E KV KD MLRL V V N DGT GT GT -- A A VPG YK V A G K T GTAQV A G P K GGGY Y DGAQ ------- IGWFVGY AP AD NP KY A F A VL 274
330 340
....*....|....*....|..
gi 16128618 591 LENGGA --- G PAVGTLMRQ IL D 609
Cdd:pfam00905 275 IDDPKR yyg G KVAAPIFKD IL E 296
Name
Accession
Description
Interval
E-value
PRK10795
PRK10795 penicillin-binding protein 2; Provisional
1-632
0e+00
penicillin-binding protein 2; Provisional
Pssm-ID: 236761 [Multi-domain]
Cd Length: 634
Bit Score: 1392.19
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 1 M KLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNG I PLA 80
Cdd:PRK10795 2 K KLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNG T PLA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 81 LNRTIYQ I EMMPEKVDN V QQTLDALRSVVDLTDDDIAAFRKERARS H RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 160
Cdd:PRK10795 82 LNRTIYQ L EMMPEKVDN L QQTLDALRSVVDLTDDDIAAFRKERARS R RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 161 Y K RRYYPYGSALTHVIGYVSKINDKDVERL NND GKLANYAATHDIGKLGIERYYEDVLHG Q TGYEEVEVNNRGRVIRQL K 240
Cdd:PRK10795 162 Y Q RRYYPYGSALTHVIGYVSKINDKDVERL DKE GKLANYAATHDIGKLGIERYYEDVLHG K TGYEEVEVNNRGRVIRQL H 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 241 E V PPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGG V LALVSTPSYDPNLFVDGISSKDYS A LLNDPN T PL V NR 320
Cdd:PRK10795 242 E Q PPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGG I LALVSTPSYDPNLFVDGISSKDYS G LLNDPN R PL I NR 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 321 ATQGVYPPASTVKPYVAVSALSAGVITRNT T LFDPGWWQLPGSEKRYRDWKKWGHGRLNVT R SLEESADTFFYQVAYDMG 400
Cdd:PRK10795 322 ATQGVYPPASTVKPYVAVSALSAGVITRNT S LFDPGWWQLPGSEKRYRDWKKWGHGRLNVT K SLEESADTFFYQVAYDMG 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 401 IDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALM I LINDGIVKV 480
Cdd:PRK10795 402 IDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALM T LINDGIVKV 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 481 PHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWE L AKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYN 560
Cdd:PRK10795 482 PHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWE I AKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYN 561
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128618 561 AHKIAERLRDHKLMTAFAPYNNPQVAVA M ILENGGAGPAVGT L MRQILDHIMLGDNNTDLPAENPAVAAAED 632
Cdd:PRK10795 562 AHKIAERLRDHKLMTAFAPYNNPQVAVA I ILENGGAGPAVGT I MRQILDHIMLGDNNTDLPAENPAVAAAED 633
pbp2_mrdA
TIGR03423 penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 ...
19-614
0e+00
penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Pssm-ID: 274573 [Multi-domain]
Cd Length: 592
Bit Score: 968.14
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 19 RRALV AFLGI L L L T GVL I A N L YN LQ IV R FTD Y Q T R S NE NRI K LVPI A P S RG I I Y DRNG IP LA L NR TIYQI E MM PEKVD NV 98
Cdd:TIGR03423 1 RRALV LGGLV L A L F GVL A A R L FY LQ VI R GEE Y A T L S ED NRI R LVPI P P P RG L I L DRNG VL LA D NR PSFSL E IV PEKVD DL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 99 QQ TLD A L RSVV DL TDD DIA A F R KE RA RS H RF TS IP V K TN LTE VQ VARFAVNQYR F PGVE VKGYKR RYYPYG SALT HV I GY 178
Cdd:TIGR03423 81 DA TLD R L AKLL DL DPE DIA R F L KE LK RS R RF EP IP L K SD LTE EE VARFAVNQYR L PGVE IEARLK RYYPYG ELAA HV L GY 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 179 V SK IN DK D V ERL NN dgkl ANYA ATHD IGK L GIE R YYED V L H G QT GY E EVEVN N RGRVIR Q L KE VPP QA G H D IY LT L D LK L 258
Cdd:TIGR03423 161 V GE IN EE D L ERL EP ---- ANYA GGDY IGK S GIE K YYED E L R G KP GY R EVEVN A RGRVIR T L SR VPP VP G K D LV LT I D AR L 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 259 QQ YI E TL L A G S R A AVVV T DPRTG GV LA L VSTPS Y DPNLFVDGISSKDY S ALLNDP NT PL V NRA T QGVYPP A ST V KP Y VA V 338
Cdd:TIGR03423 237 QQ AA E KA L G G R R G AVVV M DPRTG EI LA M VSTPS F DPNLFVDGISSKDY K ALLNDP DR PL L NRA I QGVYPP G ST F KP V VA L 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 339 S AL SA GVIT RN T TLFD PG WW QL P G se K R Y R D WK KW GHGR LNVTRSL EES A D TF FYQ V A YDM GID RLS E WMGK FG Y G HY TG 418
Cdd:TIGR03423 317 A AL EE GVIT PE T RIYC PG YF QL G G -- R R F R C WK RG GHGR VDLRKAI EES C D VY FYQ L A LRL GID KIA E YAKR FG F G QK TG 394
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 419 IDL AE E R SG NM P T REWK Q KRF KK PWY Q GDT IP V G IGQGY WTA TP I Q MSK A LMI L I N D G IVKV PHL LM S TAE - DG KQ V PWV 497
Cdd:TIGR03423 395 IDL PG E K SG LV P S REWK R KRF GQ PWY P GDT LN V S IGQGY VLV TP L Q LAV A TAA L A N G G KLYK PHL VK S IED p DG GV V RRT 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 498 Q P HEPPVGD I HSGYWELAKD GM YG V A N R P N GTA HKYFASA PYK I A A K S GTAQV FG LK AN E T Y N A HK I A ERLRDH K L MT AF 577
Cdd:TIGR03423 475 E P EVLRPLP I SPENLDVVRE GM RD V V N G P G GTA RRARLGL PYK M A G K T GTAQV VS LK QG E K Y D A EQ I P ERLRDH A L FV AF 554
570 580 590
....*....|....*....|....*....|....*...
gi 16128618 578 APY N NP QV AVA M I L E N GG A G PAV - GTLM R Q I L D HIM LG 614
Cdd:TIGR03423 555 APY D NP KI AVA V I V E H GG G G SSA a APIA R K I M D AYL LG 592
FtsI
COG0768 Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell ...
11-610
0e+00
Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell cycle control, cell division, chromosome partitioning, Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440531 [Multi-domain]
Cd Length: 568
Bit Score: 632.24
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 11 TA E SA LF V RR A L VA FL GI LLL TGV L IAN L YN LQ I V RFTD Y QTRSN ENRI KL VPI APS RG I IYDRNG IP LA L N RTI Y QIEM 90
Cdd:COG0768 4 KK E KR LF R RR L L LL FL LV LLL FLL L VGR L FY LQ V V EGDE Y AELAE ENRI RT VPI PAP RG L IYDRNG NV LA T N VPV Y SLYA 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 91 M PE K V DNVQQ T LDA L RSVVD L TDDDIAAFR K ERA R S hrft SIPV K T NL TEVQV AR fa VNQYRF PGV E V KGYKR RYYPYG S 170
Cdd:COG0768 84 D PE E V KDPEE T AEK L AKLLG L DPEELRKKL K KKS R F ---- PVYL K R NL SPEEA AR -- IRALKL PGV Y V EAEYK RYYPYG E 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 171 ALT HV I GYV SK IN DK D verlnndgklanyaath D IGK L G I E RY YED V L H G QT G YEE VEV NN RGRVIR Q L - K E V PP QA G H D 249
Cdd:COG0768 158 LAA HV L GYV GE IN GG D ----------------- G IGK S G L E KA YED L L R G TP G KRR VEV DA RGRVIR D L g E E K PP VP G K D 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 250 IY LT L D LK LQ QYI E TL L AGS ------- RA AVVV T DP R TG GV LA LV S T PS Y DPNLFV D G isskdysallnd P NT PL V NRA T 322
Cdd:COG0768 221 LV LT I D SD LQ KIA E EA L KKA veeykak SG AVVV M DP K TG EI LA MA S Y PS F DPNLFV G G ------------ P DE PL R NRA V 288
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 323 QG V Y P P A ST V KP YV A VS AL SA GVIT RN TT LFD PG WWQLP G se KRY RDW KKW GHG R L NV T RS L EE S ADTF FY QV A YDM GID 402
Cdd:COG0768 289 QG T Y E P G ST F KP FT A AA AL EE GVIT PD TT FDC PG YYRVG G -- RTI RDW DRG GHG T L TL T EA L AK S SNVG FY KL A LRL GID 366
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 403 R L SEWMG KFG Y G HY TGIDL AE E R SG NM P TR ewkqkrfk K P WY Q G D T IPVG IGQG y WTA TP I Q MSK A LMILI N D G IVKV PH 482
Cdd:COG0768 367 K L YDYLK KFG L G QK TGIDL PG E A SG LL P SP -------- K R WY P G E T ATMS IGQG - LSV TP L Q LAQ A YAAIA N G G VLVK PH 437
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 483 L LMSTAEDGKQ V PWVQ P HEP - P V gd I HSGYW E LAKD GM Y GV A N R P N GTA HKY f A SAP Y KI A A K S GTAQV FGLKANET Y NA 561
Cdd:COG0768 438 L VKEIVDPDGE V VKEE P EVL r R V -- I SPETA E TVRE GM E GV V N E P G GTA RRA - A IPG Y RV A G K T GTAQV VDIGNGGY Y KG 514
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 16128618 562 HK IA erlrdhk LMTA FAP YN NP QV AVA MIL EN G G -------- A G P AVGTL M RQI L DH 610
Cdd:COG0768 515 RH IA ------- SFVG FAP AD NP RY AVA VVV EN P G ggayggtv A A P VFREI M EAY L RL 564
Transpeptidase
pfam00905 Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss: ...
271-609
1.11e-88
Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family.
Pssm-ID: 425939 [Multi-domain]
Cd Length: 296
Bit Score: 277.76
E-value: 1.11e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 271 AAV VV T DP R TG G VLA L V ST PSYDPN L F vdgisskdysallndp NT PL V NRA TQGV Y P P A ST V KP YV A VS AL SA GV ITRNT 350
Cdd:pfam00905 1 GSA VV L DP K TG E VLA M V GK PSYDPN G F ---------------- IG PL R NRA VTSR Y E P G ST F KP FT A LA AL DN GV LKPDE 64
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 351 T L FD PGWW Q LP G se K RYR DW KKWGH G RLNVTRS LE E S ADTFFYQV A YDM G I D R L SEWMG KFGYG HY TGI D L AE E RS G NMP 430
Cdd:pfam00905 65 T I FD WPGK Q QG G -- K SIG DW NQDQV G IGTLRQA LE Y S SNWYMQKL A QKL G A D K L RSYLK KFGYG NK TGI G L PG E NA G YLT 142
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 431 TR ewkqkrfkkp W YQ G D T IPV GIG qgy W T A TP I Q MSK A LMILI N D G IVKV PHL LM S T aedgkq VPW V Q P HEPPVGD I HSG 510
Cdd:pfam00905 143 PY ---------- W LE G A T ASF GIG --- L T I TP L Q QAQ A YAAIA N G G KLVP PHL VK S I ------ EDK V D P KVLNKLP I SKS 203
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 511 YW E LA KD GMYG V A N RPN GT AH ky F A SAP YK I A A K S GTAQV F G L K ANET Y NAHK iaerlrd HKLMTAF AP YN NP QV A V A MI 590
Cdd:pfam00905 204 TA E KV KD MLRL V V N DGT GT GT -- A A VPG YK V A G K T GTAQV A G P K GGGY Y DGAQ ------- IGWFVGY AP AD NP KY A F A VL 274
330 340
....*....|....*....|..
gi 16128618 591 LENGGA --- G PAVGTLMRQ IL D 609
Cdd:pfam00905 275 IDDPKR yyg G KVAAPIFKD IL E 296
PBP_dimer
pfam03717 Penicillin-binding Protein dimerization domain; This domain is found at the N terminus of ...
63-238
2.36e-52
Penicillin-binding Protein dimerization domain; This domain is found at the N terminus of Class B High Molecular Weight Penicillin-Binding Proteins. Its function has not been precisely defined, but is strongly implicated in PBP polymerization. The domain forms a largely disordered 'sugar tongs' structure.
Pssm-ID: 427460 [Multi-domain]
Cd Length: 178
Bit Score: 177.90
E-value: 2.36e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 63 PI APS RG I IYDRNG IP LA L N RTI Y QIEMM P E K VDNVQQTLD A ------ L RSVV DL T D D D IAAFRKERARSHRFTSIPV K T 136
Cdd:pfam03717 1 PI PAP RG E IYDRNG VV LA T N KPV Y SLTIT P S K LKKADALKT A lklakl L SNYE DL D D E D LTERFLKMNSYKSYYPVVI K K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 137 NL T E VQ VAR FAV N QYRF PGV EVKGYKR RYYPYG SALT H VI GYV SK I NDKDV E RLNND G klan Y AATHDI GK L G I E RY YE D 216
Cdd:pfam03717 81 NL S E EE VAR IEE N LLEL PGV SIETDPV RYYPYG ELAA H LL GYV GE I TEEEL E KYLDK G ---- Y SRGDLV GK S G L E KQ YE S 156
170 180
....*....|....*....|..
gi 16128618 217 VL H G QT G YEE VEV NNR GRVIR Q 238
Cdd:pfam03717 157 VL R G KD G VRQ VEV DAL GRVIR E 178
PRK15105
PRK15105 peptidoglycan synthase FtsI; Provisional
13-608
9.55e-39
peptidoglycan synthase FtsI; Provisional
Pssm-ID: 185060 [Multi-domain]
Cd Length: 578
Bit Score: 150.74
E-value: 9.55e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 13 E S A L F V -- R R AL VAFLGI L L L TGV L IANLY n LQ IVR f T D YQT R SNEN R - IKLVPIAP SRG I I Y DR N G I PLA LNRTIYQ I E 89
Cdd:PRK15105 14 E Q A N F I sw R F AL LCGCIL L A L VFL L GRVAW - LQ VIN - P D MLV R EGDM R s LRVQEVST SRG M I T DR S G R PLA VSVPVKA I W 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 90 MM P EK V - D NVQQTL D ---- AL RSVVDLTD D DIA A f R KERARSH RF TSIPVKT N lte VQV A RF a VNQYRF PG VEVKGYK RR 164
Cdd:PRK15105 92 AD P KE V h D AGGISV D drwk AL ADALNIPL D QLS A - R INANPKG RF IYLARQV N --- PDM A DY - IKKLKL PG IHLREES RR 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 165 YYP Y G SALT H V IG y VSKINDKDV E rlnndgklanyaathdigkl G I E RYYEDV L H GQ T G YEE V EVNNR GRVI RQLKEVPP 244
Cdd:PRK15105 167 YYP S G EVTA H L IG - FTNVDSQGI E -------------------- G V E KSFDKW L T GQ P G ERI V RKDRY GRVI EDISSTDS 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 245 QA G H DIY L TL D LK LQ QYIETL L -------- A G S RA AV V V t D PR TG G VLA LVST PSY D PN lfvdgisskdys A L LND P NTP 316
Cdd:PRK15105 226 QA A H NLA L SI D ER LQ ALVYRE L nnavafnk A E S GS AV L V - D VN TG E VLA MANS PSY N PN ------------ N L SGT P KDA 292
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 317 LV NRA TQG V YP P A STVKP Y V AVS AL SA GV ITR N TT L f DPGWWQLP G S E ---- K RY RD wkkwghgr L NV T RS L EE S ADTFF 392
Cdd:PRK15105 293 MR NRA ITD V FE P G STVKP M V VMT AL QR GV VKE N SV L - NTVPYRIN G H E ikdv A RY SE -------- L TL T GV L QK S SNVGV 363
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 393 YQV A YD M GIDR L SEWMGK FG Y G HY T GID L AE ERSG NM P T rewkqkrf K KP W YQGDTIPVGI G Q G Y w TA TP I Q MSKALMIL 472
Cdd:PRK15105 364 SKL A LA M PSSA L VDTYSR FG L G KA T NLG L VG ERSG LY P Q -------- K QR W SDIERATFSF G Y G L - MV TP L Q LARVYATI 434
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 473 IND GI VK v P hl L MS T AE D gkqvpwvqphe PPV GDIHSGYWELAKD --- G M YG VA n R P N G TAH K Y f A SAP Y K IA A K S GTA Q 549
Cdd:PRK15105 435 GSY GI YR - P -- L SI T KV D ----------- PPV PGERVFPESIVRT vvh M M ES VA - L P G G GGV K A - A IKG Y R IA I K T GTA K 498
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128618 550 VF G LKAN et Y NAHK IA erlrdhkl M TA - F AP YNN P QV A VAMILEN ------- GGA -- G P AV G TL M RQI L 608
Cdd:PRK15105 499 KV G PDGR -- Y INKY IA -------- Y TA g V AP ASQ P RF A LVVVIND pqagkyy GGA vs A P VF G AI M GGV L 557
MrcB
COG0744 Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
235-632
1.60e-21
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440507 [Multi-domain]
Cd Length: 630
Bit Score: 98.84
E-value: 1.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 235 V I R Q L K E ----- VPPQA G HD IY L TLD L KLQ QYI E TLLA --------- G SR AA V VV T DP R TG G VLA L V STPS Y DPNL F vdg 300
Cdd:COG0744 277 V R R E L E E llged DLYRG G LK IY T TLD P KLQ KAA E KAVK nvlpegkpg G LQ AA L VV V DP K TG E VLA M V GGRD Y GKSQ F --- 353
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 301 isskdysallndpntplv NRATQ GVYP P A ST V KP Y V AVS AL SA G v I T RN TT L ------ F DP G W W QLPGSEK RY rdwkkwg 374
Cdd:COG0744 354 ------------------ NRATQ AKRQ P G ST F KP F V YAA AL EQ G - Y T PA TT V ddepvt F PG G G W SPKNYDG RY ------- 407
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 375 H G RLNVTRS L EE S AD T FFYQV A YDM G I D RLSEWMGKF G yghytgidlaeersgnmptrewkqkr FKK P WYQGDTIPV G IG 454
Cdd:COG0744 408 R G PVTLREA L AN S LN T PAVRL A QEV G L D KVVDTARRL G -------------------------- ITS P LDPNPSLAL G TS 461
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 455 qgyw TAT P IQ M SK A LMILI N D G IVKV PH LLMS - T AE DGK QVPWVQ P HEPP V GDIHSG Y we L AK D GMYG V ANR pn GT AHK - 532
Cdd:COG0744 462 ---- EVS P LE M AS A YATFA N G G VYVE PH AITK v T DA DGK VLYEAK P KCEQ V ISPEVA Y -- L MT D MLQD V VTS -- GT GRA a 533
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 533 YFASA P yk I A A K S GT AQVF glkanetynahkiaerl RD hklm TA F AP Y n N PQ VAV A ---------- M ILEN GG AG PA vg T 602
Cdd:COG0744 534 RLPGR P -- V A G K T GT TNDN ----------------- RD ---- AW F VG Y - T PQ LVT A vwvgnddnsp M GYVT GG SL PA -- P 587
410 420 430
....*....|....*....|....*....|
gi 16128618 603 LM R QILDHIML G DNNT D L P AENPA V AAA E D 632
Cdd:COG0744 588 IW R DFMEAALE G LPVE D F P KPSGV V RID E P 617
PbpC
COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
234-354
2.53e-06
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443980 [Multi-domain]
Cd Length: 773
Bit Score: 50.60
E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128618 234 R VI RQL kevp P QAGH d I YL TLD LK LQ QYI E T L LAG -- S R -------- AAV V V T D P RTG G VLA L V - S TPSY D PNLF -- VD G 300
Cdd:COG4953 263 R LL RQL ---- P GGTR - I RT TLD AG LQ RRL E R L VRR yv R R lkqngihn AAV L V V D N RTG E VLA Y V g S ADFF D ASRQ gq VD M 337
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 16128618 301 ISSK dysallndpntplvn R A tqgvyp P A ST V KP YVAVS AL SA G V I TRN T T L F D 354
Cdd:COG4953 338 VRAL --------------- R S ------ P G ST L KP FLYGL AL DQ G L I HPE T L L A D 370
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
