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Conserved domains on  [gi|16128675|ref|NP_415228|]
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DUF2517 domain-containing protein YbfA [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

YbfA family protein( domain architecture ID 10566615)

YbfA family protein is a DUF2517 domain-containing protein similar to Escherichia coli protein YbfA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2517 pfam10725
Protein of unknown function (DUF2517); This family is conserved in Proteobacteria. Several ...
 4-64 1.17e-27

Protein of unknown function (DUF2517); This family is conserved in Proteobacteria. Several members are annotated as being protein YbfA. The function is not known.


:

Pssm-ID: 431458  Cd Length: 61  Bit Score: 94.05  E-value: 1.17e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16128675    4 YREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKAT 64
Cdd:pfam10725  1 YRPYSLHRILLRRTGVVLVGILALPVMLFRRDRARFYSYLHRVWLKTSDKPVWLEQSEMAA 61
 
Name Accession Description Interval E-value
DUF2517 pfam10725
Protein of unknown function (DUF2517); This family is conserved in Proteobacteria. Several ...
 4-64 1.17e-27

Protein of unknown function (DUF2517); This family is conserved in Proteobacteria. Several members are annotated as being protein YbfA. The function is not known.


Pssm-ID: 431458  Cd Length: 61  Bit Score: 94.05  E-value: 1.17e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16128675    4 YREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKAT 64
Cdd:pfam10725  1 YRPYSLHRILLRRTGVVLVGILALPVMLFRRDRARFYSYLHRVWLKTSDKPVWLEQSEMAA 61
 
Name Accession Description Interval E-value
DUF2517 pfam10725
Protein of unknown function (DUF2517); This family is conserved in Proteobacteria. Several ...
 4-64 1.17e-27

Protein of unknown function (DUF2517); This family is conserved in Proteobacteria. Several members are annotated as being protein YbfA. The function is not known.


Pssm-ID: 431458  Cd Length: 61  Bit Score: 94.05  E-value: 1.17e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16128675    4 YREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKAT 64
Cdd:pfam10725  1 YRPYSLHRILLRRTGVVLVGILALPVMLFRRDRARFYSYLHRVWLKTSDKPVWLEQSEMAA 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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