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Conserved domains on  [gi|16128732|ref|NP_415285|]
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molybdate ABC transporter membrane subunit [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

molybdate ABC transporter permease( domain architecture ID 10793250)

molybdate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter for molybdenum, and is responsible for the translocation of the substrate across the membrane

Gene Symbol:  modB
Gene Ontology:  GO:0055052|GO:0015689|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  11421278|25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-228 3.64e-136

molybdate ABC transporter permease subunit;


:

Pssm-ID: 181841  Cd Length: 229  Bit Score: 381.19  E-value: 3.64e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    1 MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERL 80
Cdd:PRK09421   1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   81 YDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS 160
Cdd:PRK09421  81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16128732  161 LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAG 228
Cdd:PRK09421 161 LGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLG 228
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-228 3.64e-136

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 381.19  E-value: 3.64e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    1 MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERL 80
Cdd:PRK09421   1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   81 YDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS 160
Cdd:PRK09421  81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16128732  161 LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAG 228
Cdd:PRK09421 161 LGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLG 228
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 3-226 6.33e-91

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 266.53  E-value: 6.33e-91
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   3 LTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYD 82
Cdd:COG4149   1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  83 WFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLG 162
Cdd:COG4149  81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128732 163 EFGATITFVSNIPGETRTIPSAMYTLIQTpGGESGAARLCIISIALAMISLLISEWLARISRER 226
Cdd:COG4149 161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 12-221 2.85e-65

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 200.93  E-value: 2.85e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    12 LLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGeRLYDWFGITFAFS 91
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    92 WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFV 171
Cdd:TIGR02141  80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 16128732   172 SNIPGETRTIPSAMYTLIQtpGGESGAARLCIISIALAMISLLISEWLAR 221
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNK 207
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 12-190 1.11e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.31  E-value: 1.11e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  12 LLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGerlydwfgiTFAFS 91
Cdd:cd06261   2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG---------ILPGL 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  92 WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFV 171
Cdd:cd06261  73 GLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152

                       170
                ....*....|....*....
gi 16128732 172 SNIPGETRTIPSAMYTLIQ 190
Cdd:cd06261 153 GGEAPGPGTGLLLIFAILF 171
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 14-213 6.05e-11

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 59.48  E-value: 6.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   14 SLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVG---YLLLVSMGRRGFIGerlydwfgitFAF 90
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGlivYLLLSRSGPLGFLG----------LLY 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   91 SWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLpGIIVGTVLAFARSLGEFGATITF 170
Cdd:NF038017  71 TPTAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMV 149

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 16128732  171 VSNIPGETRTIPSAmyTLIQTPGGESGAArlciisIALAMISL 213
Cdd:NF038017 150 GGNIRGYTRVLTTA--IVLETSKGNFDLA------LALGIILL 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 80-221 2.90e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.61  E-value: 2.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    80 LYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFAR 159
Cdd:pfam00528  40 VVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128732   160 SLGEFgATITFVSNIPGETRTIPSAMYTLiQTPGGESGAARLCIISIALAMISLLISEWLAR 221
Cdd:pfam00528 120 ALGGA-VLLEFLGSWPGLGLLLIEAILGY-DYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-228 3.64e-136

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 381.19  E-value: 3.64e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    1 MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERL 80
Cdd:PRK09421   1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   81 YDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS 160
Cdd:PRK09421  81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16128732  161 LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAG 228
Cdd:PRK09421 161 LGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLG 228
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 3-226 6.33e-91

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 266.53  E-value: 6.33e-91
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   3 LTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYD 82
Cdd:COG4149   1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  83 WFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLG 162
Cdd:COG4149  81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128732 163 EFGATITFVSNIPGETRTIPSAMYTLIQTpGGESGAARLCIISIALAMISLLISEWLARISRER 226
Cdd:COG4149 161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 12-221 2.85e-65

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 200.93  E-value: 2.85e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    12 LLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGeRLYDWFGITFAFS 91
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    92 WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFV 171
Cdd:TIGR02141  80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 16128732   172 SNIPGETRTIPSAMYTLIQtpGGESGAARLCIISIALAMISLLISEWLAR 221
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNK 207
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 2-224 5.78e-52

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 168.78  E-value: 5.78e-52
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   2 ILTDPE-WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERL 80
Cdd:COG0555  46 VLTSPRvLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLL 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  81 YDwFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS 160
Cdd:COG0555 126 AP-LGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARA 204

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128732 161 LGEFGATITFVSNIPGETRTIPSAMYTLIQTpGGESGAARLCIISIALAMISLLISEWLARISR 224
Cdd:COG0555 205 LGEFGAVIFIAGNLPMKTEILPLLIYLKLEE-GDYAGATAIALVLLLISFLLLLLINLLQRRSR 267
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 3-191 7.80e-38

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 131.37  E-value: 7.80e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732     3 LTDPEWQ-AVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLy 81
Cdd:TIGR01581  14 LTDPENIkALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYL- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    82 DWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSL 161
Cdd:TIGR01581  93 EAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARAL 172

                         170       180       190
                  ....*....|....*....|....*....|
gi 16128732   162 GEFGATITFVSNIPGETRTIPSAMYTLIQT 191
Cdd:TIGR01581 173 GEFGATLMFAGSIQGKTRTLPLAIYLNIQS 202
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 2-214 1.39e-35

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 126.70  E-value: 1.39e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732     2 ILTDPEWQ-AVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGeRL 80
Cdd:TIGR00969  52 NATDPIAVsAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLG-SW 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    81 YDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS 160
Cdd:TIGR00969 131 LASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARA 210

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 16128732   161 LGEFGATITFVSNIPGETRTIPSAMYTLIQ---TPGGESGAARLCIIS-IALAMISLL 214
Cdd:TIGR00969 211 LGEFGAVVVVSGNIPGKTLTLPLLIEERLEqydYPGAYVIAAVLLLVSlVTLFLINAL 268
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
8-224 8.27e-34

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 126.81  E-value: 8.27e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   8 WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGIT 87
Cdd:COG1178  53 WRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLE 132

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  88 FA--FSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFG 165
Cdd:COG1178 133 PPdiYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFG 212

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 16128732 166 AtitfVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISR 224
Cdd:COG1178 213 T----PLVLGGGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRR 267
cysT CHL00187
sulfate transport protein; Provisional
 2-191 3.90e-32

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 117.04  E-value: 3.90e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    2 ILTDPEWQ-AVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGeRL 80
Cdd:CHL00187  47 KATEPIALsAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIG-HL 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   81 YDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS 160
Cdd:CHL00187 126 LSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRA 205

                        170       180       190
                 ....*....|....*....|....*....|.
gi 16128732  161 LGEFGATITFVSNIPGETRTIPSAMYTLIQT 191
Cdd:CHL00187 206 IGEYGSIVIISSNIPFKDLVASVLIFQSLEQ 236
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 2-221 5.21e-32

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 117.43  E-value: 5.21e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732     2 ILTDPEWQAVL-LSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGeRL 80
Cdd:TIGR02139  42 IITEPRVLAAYkLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIG-SF 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    81 YDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS 160
Cdd:TIGR02139 121 LAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARA 200

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128732   161 LGEFGATITFVSNIPGETRTIPSAMYTLIQT---PGGESGAARLCIISIALAMISLLISEWLAR 221
Cdd:TIGR02139 201 VGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQydyAGATAIASVMLIISFVILLFINLLQWWALR 264
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 2-227 5.79e-29

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 109.05  E-value: 5.79e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   2 ILTDPEW-QAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGerl 80
Cdd:COG1177  53 LFSDPRLlDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSG--- 129

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  81 ydwfgitfafSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS 160
Cdd:COG1177 130 ----------GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLS 199

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16128732 161 LGEFGATItFVSniPGETRTIPSAMYTLIQTPGGESGAArLCIISIALAMISLLISEWLARISRERA 227
Cdd:COG1177 200 FDEFVITL-FLA--GPGVTTLPVYIYSMIRRGISPEINA-LSTLLILLSLLLLLLAERLRRRGERRR 262
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
2-190 6.33e-28

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 106.76  E-value: 6.33e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    2 ILTDPEWQAVL-LSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERL 80
Cdd:PRK10971  50 VITNPQVVAAYkVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWL 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   81 YDwFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS 160
Cdd:PRK10971 130 AK-FDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRS 208

                        170       180       190
                 ....*....|....*....|....*....|
gi 16128732  161 LGEFGATITFVSNIPGETRTIPSAMYTLIQ 190
Cdd:PRK10971 209 LGEFGAVIFIAGNIAWKTEVTSLMIFVRLQ 238
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 2-228 8.82e-25

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 98.68  E-value: 8.82e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   2 ILTDPE-WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERL 80
Cdd:COG1176  59 LFTDPLyLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLL 138

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  81 YdWFGIT-----FAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVL 155
Cdd:COG1176 139 L-ALGLIdeplrLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLL 217

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16128732 156 AFARSLGEFgATITFVSniPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAG 228
Cdd:COG1176 218 VFIPALGAF-VTPALLG--GGKVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-221 3.63e-24

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 99.85  E-value: 3.63e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   1 MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVL--PPVVVGYLLLVsmgrRGFIGE 78
Cdd:COG1178 330 VLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVpgIVLGLGLLLLF----NRPLPL 405

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  79 RLYDWFGITfafswrgaVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFA 158
Cdd:COG1178 406 LLYGTLAIL--------VLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFV 477

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16128732 159 RSLGEFGATITFVsniPGETRTIPSAMYTLIQTPGGESGAArLCIISIALAMISLLISEWLAR 221
Cdd:COG1178 478 TSMKELSATLLLR---PPGFETLAVLIYQLASSGRYGEAAA-LALLLVLVSLLPVLLLERLLG 536
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
3-206 2.10e-20

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 87.11  E-value: 2.10e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    3 LTDPEW-QAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLy 81
Cdd:PRK11602  57 LADPDMlHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL- 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   82 DWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSL 161
Cdd:PRK11602 136 DEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAI 215

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 16128732  162 GEFGATITFVSNIPGETRTIPSAMYTLIQ---TPGGESGAARLCIISI 206
Cdd:PRK11602 216 GEFGAVSVVSGSIRGETLSLPLQIELLEQdynTVGSFTAAALLTLMAI 263
TupA COG4662
ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and ...
 5-216 1.50e-16

ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and metabolism];


Pssm-ID: 443699 [Multi-domain]  Cd Length: 232  Bit Score: 75.53  E-value: 1.50e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   5 DPE-WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGErlYDW 83
Cdd:COG4662  19 DPElWEIVLLSLRVSLTATLIAALIGLPLGALLALKRFPGRRLVISLLNTLMGLPPVVVGLLVYLLLSRSGPLGF--LGL 96

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  84 FgitfaFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLpGIIVGTVLAFARSLGE 163
Cdd:COG4662  97 L-----FTPTAMIIAQTVLALPIVAALTRAAVEDLDRRLRETLRSLGASRLQALLTLLWEARF-GLLAAVLAGFGRAISE 170

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|...
gi 16128732 164 FGATITFVSNIPGETRTIPSAMytLIQTPGGESGAArlciisIALAMISLLIS 216
Cdd:COG4662 171 VGAVMMVGGNIKGYTRVMTTAI--ALETSKGEFALA------IALGIVLLAIA 215
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 12-190 1.11e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.31  E-value: 1.11e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  12 LLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGerlydwfgiTFAFS 91
Cdd:cd06261   2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG---------ILPGL 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  92 WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFV 171
Cdd:cd06261  73 GLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152

                       170
                ....*....|....*....
gi 16128732 172 SNIPGETRTIPSAMYTLIQ 190
Cdd:cd06261 153 GGEAPGPGTGLLLIFAILF 171
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 8-166 4.39e-13

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 67.78  E-value: 4.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732     8 WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGErlydWFGIT 87
Cdd:TIGR03262  53 LQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKG----LLGGF 128

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128732    88 FAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGA 166
Cdd:TIGR03262 129 SIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGV 207
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 88-228 1.26e-11

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 62.36  E-value: 1.26e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  88 FAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGE---- 163
Cdd:COG0581 110 LGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGEtapl 189

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16128732 164 ---FGATITFVSNIPGETRTIPSAMYTLIQTPGGES-----GAArlcIISIALAMISLLISEWLARISRERAG 228
Cdd:COG0581 190 lftAGVSPFLPLSLFDPFATLPVHIYNLASSPYPAAqelawAAA---LVLLLLVLLLNLLARLLRRRFRKKLK 259
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 14-213 6.05e-11

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 59.48  E-value: 6.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   14 SLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVG---YLLLVSMGRRGFIGerlydwfgitFAF 90
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGlivYLLLSRSGPLGFLG----------LLY 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   91 SWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLpGIIVGTVLAFARSLGEFGATITF 170
Cdd:NF038017  71 TPTAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMV 149

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 16128732  171 VSNIPGETRTIPSAmyTLIQTPGGESGAArlciisIALAMISL 213
Cdd:NF038017 150 GGNIRGYTRVLTTA--IVLETSKGNFDLA------LALGIILL 184
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 3-164 1.07e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 57.00  E-value: 1.07e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    3 LTDPEWQAVLL-SLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLY 81
Cdd:PRK09497  56 LLDPLYAEVLLhSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLL 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   82 dWFGITFA-----FSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLA 156
Cdd:PRK09497 136 -WLGVIDTpirimFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLV 214


                 ....*...
gi 16128732  157 FARSLGEF 164
Cdd:PRK09497 215 LLPAMGMF 222
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 80-221 2.90e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.61  E-value: 2.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    80 LYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFAR 159
Cdd:pfam00528  40 VVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128732   160 SLGEFgATITFVSNIPGETRTIPSAMYTLiQTPGGESGAARLCIISIALAMISLLISEWLAR 221
Cdd:pfam00528 120 ALGGA-VLLEFLGSWPGLGLLLIEAILGY-DYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 75-185 7.53e-09

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 54.71  E-value: 7.53e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  75 FIGERLYDWFG-ITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGT 153
Cdd:COG0573 138 VLVPLLRDLFPwPPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 16128732 154 VLAFARSLGE-------FGATITFVSNIPGETRTIPSAM 185
Cdd:COG0573 218 ILGLGRALGEtmavlmvAGNAPQIPFSLFDPGRTLTALI 256
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 86-189 7.94e-09

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 54.55  E-value: 7.94e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    86 ITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFG 165
Cdd:TIGR00974 122 LGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETA 201

                          90       100       110
                  ....*....|....*....|....*....|.
gi 16128732   166 ATI-------TFVSNIPGETRTIPSAMYTLI 189
Cdd:TIGR00974 202 PLLftaggsaFTPPNLFDPFATLPVLIYNLA 232
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 5-225 9.62e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 54.22  E-value: 9.62e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    5 DPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVsmgrrgfigerLYDWF 84
Cdd:PRK09500  53 DSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLV-----------LFMLL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   85 GITFAFswrGAVLAAAV-MSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGE 163
Cdd:PRK09500 122 GIQLGF---WSLLFAHItFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDD 198

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128732  164 FGATiTFVSNIPGEtrTIPSAMYTLIQTpGGESGAARLCIISIALAMISLLISEWLARISRE 225
Cdd:PRK09500 199 VVVS-SFVTGPSYE--ILPLKIYSMVKV-GVSPEVNALATILLVLSLVLVILSQLLARDKTK 256
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 8-191 1.40e-08

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 53.56  E-value: 1.40e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   8 WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVG---YLLLVSMGrrgfigerLYDwf 84
Cdd:COG0395  73 GRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLiplYLLFRQLG--------LLN-- 142

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  85 gitfafSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEF 164
Cdd:COG0395 143 ------TYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDF 216

                       170       180
                ....*....|....*....|....*..
gi 16128732 165 GATITFVSNipGETRTIPSAMYTLIQT 191
Cdd:COG0395 217 LWPLILLTS--PDLRTLPVGLASFQGQ 241
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 83-161 1.61e-08

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 53.23  E-value: 1.61e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128732  83 WFGITFAfswrGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSL 161
Cdd:COG0600 120 WFGIGEA----SKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 84-218 2.27e-08

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 53.42  E-value: 2.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    84 FGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGE 163
Cdd:TIGR02138 143 LIPLFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGE 222

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128732   164 -------------------FGATITFVSNIPGEtrtIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEW 218
Cdd:TIGR02138 223 tmavtmvignvfpisplslFDPGTTITSLIANQ---FGEASGGSVHTSALFALGLVLFVITLLVNILARYIVRR 293
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 2-165 3.54e-08

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 52.70  E-value: 3.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    2 ILTDPEWQAVLL-SLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERL 80
Cdd:PRK15050  65 VLGSPDFRGALLtTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIAL 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   81 YDWFG-----ITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVL 155
Cdd:PRK15050 145 QRLFGleappLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSL 224

                        170
                 ....*....|
gi 16128732  156 AFARSLGEFG 165
Cdd:PRK15050 225 CLLLTLNEFG 234
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 94-164 2.06e-07

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 50.48  E-value: 2.06e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128732   94 GAVLAAAVMSF-PLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEF 164
Cdd:PRK10683 185 LAVYIGIVYAYlPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEF 256
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-226 2.39e-07

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 50.13  E-value: 2.39e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   2 ILTDPE-WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRcTFPGKALLDSVLHLPLVLPPVVVGYL--------------L 66
Cdd:COG1175  68 LFTDPRfWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIwkwlfnpdygllnaL 146

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  67 LVSMG--RRGFIGERLYDWFGITFAFSWRGAVLAAavmsfpLMVRAirlALEGVDVKLEQAARTLGAGRWRVFFTITLPL 144
Cdd:COG1175 147 LGALGlePINWLGDPSLALPAVIIVTVWKGTGFNM------LIFLA---GLQSIPRELYEAARIDGASPWQRFRRITLPL 217

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732 145 TLPGIIVGTVLAFARSLGEFGATITFVSNIPG-ETRTIPSAMYTLIQTpGGESGAArlCIISIALAMISLLISEWLARIS 223
Cdd:COG1175 218 LRPTILFVLVLSTIGALQVFDLVYVLTGGGPGnSTTTLVLYIYQTAFQ-QFDFGYA--SAIAVVLFLIILVLTLLQLRLL 294


                ...
gi 16128732 224 RER 226
Cdd:COG1175 295 RRR 297
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 3-224 6.58e-07

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 49.03  E-value: 6.58e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732   3 LTDPE-WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCtfpGKALLDSVLHLPLVLPPVVVGYLL----LVSMGRRGFI- 76
Cdd:COG4132  56 LTSPFyLQAFWNSIWLSLASALIGAVIGLLLAYALRRG---GPGWLRRAVLAFSGVASNFAGVPLafafIATLGRNGLVt 132

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  77 ------GERLYDWFGItfaFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGII 150
Cdd:COG4132 133 lllkqlGIDLYDGFNL---YSFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLL 209

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128732 151 VGTVLAFARSLGEFG---ATITFVSNIpgetrtIPSAMYTLIQ--TPGGESGAARLCIISIALAMISLLISEWLARISR 224
Cdd:COG4132 210 GTFLLLFANAFGAYAtayALTGGNYNL------VPIRIGALISgdVLLDPNLGAALALGMIVIMALVMALYQWLQRRSR 282
pstA PRK11268
phosphate ABC transporter permease PstA;
90-163 1.15e-06

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 48.14  E-value: 1.15e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16128732   90 FSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGE 163
Cdd:PRK11268 151 FSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGE 224
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 115-226 2.26e-05

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 44.46  E-value: 2.26e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  115 LEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFgATITFVSNiPGETrTIPSAMYTLIQTPGG 194
Cdd:PRK10592 163 LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDL-VIASFVSG-PGAT-TLPMLVFSSVRMGVN 239

                         90       100       110
                 ....*....|....*....|....*....|..
gi 16128732  195 ESGAARLCIISIALAMISLLISEWLARISRER 226
Cdd:PRK10592 240 PEINALATLILGVVGIVGFIAWYLMARAEKQR 271
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 88-152 3.94e-05

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 43.12  E-value: 3.94e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16128732  88 FAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVG 152
Cdd:COG1174  78 LGIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAG 142
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 84-168 4.23e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 43.71  E-value: 4.23e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732  84 FGITFAFSW------RGAVLAA-AVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLA 156
Cdd:COG4135 411 FGLQVLLLRlgldgtWLAVIWAhLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVG 490

                        90
                ....*....|..
gi 16128732 157 FARSLGEFGATI 168
Cdd:COG4135 491 FAVSVAQYLPTL 502
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 8-149 1.75e-04

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 42.13  E-value: 1.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    8 WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGeRLYDWFGIT 87
Cdd:PRK09433  43 WHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLA-QLLQALGLE 121

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16128732   88 FAFS---WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPL---TLPGI 149
Cdd:PRK09433 122 WPFSiygLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYlrrQLPPV 189
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 8-221 7.41e-04

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 40.29  E-value: 7.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732     8 WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGErLYDWFGIT 87
Cdd:TIGR01253  46 QHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLAT-LANLFGLE 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128732    88 FAFS---WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEF 164
Cdd:TIGR01253 125 WQFHiygLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASF 204

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 16128732   165 gATITFVSNIPGETrTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLAR 221
Cdd:TIGR01253 205 -ATVLSLGGGPQAT-TIELAIYQAILFDFDLAKAALFALLQFVCCLGLFLLSQRFSK 259
pstC PRK11275
phosphate ABC transporter permease PstC;
100-171 1.20e-03

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 39.29  E-value: 1.20e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16128732  100 AVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGAtITFV 171
Cdd:PRK11275 178 AIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMA-VTFI 248
malG PRK10998
maltose ABC transporter permease MalG;
94-164 1.67e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 38.54  E-value: 1.67e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16128732   94 GAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEF 164
Cdd:PRK10998 160 GGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEV 230
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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