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Conserved domains on  [gi|16128770|ref|NP_415323|]
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DUF1471 domain-containing protein YbiJ [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

DUF1471 domain-containing protein( domain architecture ID 10013471)

DUF1471 domain-containing protein similar to Escherichia coli protein YbiJ

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10259 PRK10259
hypothetical protein; Provisional
1-86 2.01e-31

hypothetical protein; Provisional


:

Pssm-ID: 137782  Cd Length: 86  Bit Score: 105.19  E-value: 2.01e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128770   1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSG 80
Cdd:PRK10259  1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSG 80

                ....*.
gi 16128770  81 TAVIYK 86
Cdd:PRK10259 81 TAVIYK 86
 
Name Accession Description Interval E-value
PRK10259 PRK10259
hypothetical protein; Provisional
1-86 2.01e-31

hypothetical protein; Provisional


Pssm-ID: 137782  Cd Length: 86  Bit Score: 105.19  E-value: 2.01e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128770   1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSG 80
Cdd:PRK10259  1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSG 80

                ....*.
gi 16128770  81 TAVIYK 86
Cdd:PRK10259 81 TAVIYK 86
stress_YhcN NF033776
peroxide/acid stress response protein YhcN;
1-86 2.52e-13

peroxide/acid stress response protein YhcN;


Pssm-ID: 411360  Cd Length: 87  Bit Score: 59.28  E-value: 2.52e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128770   1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADG-ASTLDALEAKLAEKAAAAGASGYSITSATNNNKLS 79
Cdd:NF033776  1 MKIKTTIAALSLLSVLSFGAFAAQSVNAEQAQNLQSMGTISVSGvGGSPMDIRQALSQKADEQGASAYRVIEARNGGNWH 80

                ....*..
gi 16128770  80 GTAVIYK 86
Cdd:NF033776 81 ATAELYK 87
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
34-85 1.47e-04

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 35.96  E-value: 1.47e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 16128770   34 MNKIGVVSADG-ASTLDALEAKLAEKAAAAGASGYSITSA--TNNNKLSGTAVIY 85
Cdd:pfam07338  1 LQPIGTVSVSGvFGSPSDAEAALSKKADAKGAKSYRIISAdePNGGNWHGTAELY 55
 
Name Accession Description Interval E-value
PRK10259 PRK10259
hypothetical protein; Provisional
1-86 2.01e-31

hypothetical protein; Provisional


Pssm-ID: 137782  Cd Length: 86  Bit Score: 105.19  E-value: 2.01e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128770   1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSG 80
Cdd:PRK10259  1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSG 80

                ....*.
gi 16128770  81 TAVIYK 86
Cdd:PRK10259 81 TAVIYK 86
stress_YhcN NF033776
peroxide/acid stress response protein YhcN;
1-86 2.52e-13

peroxide/acid stress response protein YhcN;


Pssm-ID: 411360  Cd Length: 87  Bit Score: 59.28  E-value: 2.52e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128770   1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADG-ASTLDALEAKLAEKAAAAGASGYSITSATNNNKLS 79
Cdd:NF033776  1 MKIKTTIAALSLLSVLSFGAFAAQSVNAEQAQNLQSMGTISVSGvGGSPMDIRQALSQKADEQGASAYRVIEARNGGNWH 80

                ....*..
gi 16128770  80 GTAVIYK 86
Cdd:NF033776 81 ATAELYK 87
PRK09929 PRK09929
hypothetical protein; Provisional
1-86 4.66e-05

hypothetical protein; Provisional


Pssm-ID: 182151  Cd Length: 91  Bit Score: 38.35  E-value: 4.66e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128770   1 MKTINTVVAAmALSTLSFGVFAAEPVTASQ----AQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNN 76
Cdd:PRK09929  1 MKIISKMLLG-ALAFAVTNVYAAELMTKAEfekvESQYEKIGTISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDN 79
                        90
                ....*....|
gi 16128770  77 KLSGTAVIYK 86
Cdd:PRK09929 80 KIHGTADIYK 89
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
34-85 1.47e-04

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 35.96  E-value: 1.47e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 16128770   34 MNKIGVVSADG-ASTLDALEAKLAEKAAAAGASGYSITSA--TNNNKLSGTAVIY 85
Cdd:pfam07338  1 LQPIGTVSVSGvFGSPSDAEAALSKKADAKGAKSYRIISAdePNGGNWHGTAELY 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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