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Conserved domains on  [gi|16128863|ref|NP_415416|]
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dimethyl sulfoxide reductase subunit C [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

dimethyl sulfoxide reductase anchor subunit family protein( domain architecture ID 10523163)

anaerobic dimethyl sulfoxide (DMSO) reductase anchor subunit is the membrane anchor component of a heterotrimeric enzyme that functions as a terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds; similar to Escherichia coli dimethyl sulfoxide (DMSO) reductase anchor subunit DmsC which anchors the DMSO reductase complex to the periplasmic side of the inner membrane

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DmsC pfam04976
DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of ...
1-277 4.88e-118

DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).


:

Pssm-ID: 398575  Cd Length: 275  Bit Score: 339.80  E-value: 4.88e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863     1 MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEaQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVG 80
Cdd:pfam04976   1 MNTGLHELPLVIFTVLAQSVVGAFIVFAFVLLFGKNQAL-RQYVHKSMFVLLALLGIGFIASIMHLGSPLRAFNSLNRVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863    81 ASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNsIDTVPTWYSIWTPMGFFLTMF 160
Cdd:pfam04976  80 ASMLSNEIAAGAIFFALAGLYWLVAILGKLPPALGHLWLIVTMALGIIFMYMMNMVYH-IDTVPTWNTGITTWGFYLTVL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863   161 MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCL 240
Cdd:pfam04976 159 LGGPTLGYALLYFARVDTGTFLFLPFLFVLALTLNAIVIIYQGFSLATIHSSVQQAAALVPDYATLIVLRYVLLFVALLL 238
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 16128863   241 WIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGL 277
Cdd:pfam04976 239 LLIPLYVTRVPNVPLLVLSVLLILAGEMIGRVLFYGL 275
 
Name Accession Description Interval E-value
DmsC pfam04976
DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of ...
1-277 4.88e-118

DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).


Pssm-ID: 398575  Cd Length: 275  Bit Score: 339.80  E-value: 4.88e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863     1 MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEaQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVG 80
Cdd:pfam04976   1 MNTGLHELPLVIFTVLAQSVVGAFIVFAFVLLFGKNQAL-RQYVHKSMFVLLALLGIGFIASIMHLGSPLRAFNSLNRVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863    81 ASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNsIDTVPTWYSIWTPMGFFLTMF 160
Cdd:pfam04976  80 ASMLSNEIAAGAIFFALAGLYWLVAILGKLPPALGHLWLIVTMALGIIFMYMMNMVYH-IDTVPTWNTGITTWGFYLTVL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863   161 MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCL 240
Cdd:pfam04976 159 LGGPTLGYALLYFARVDTGTFLFLPFLFVLALTLNAIVIIYQGFSLATIHSSVQQAAALVPDYATLIVLRYVLLFVALLL 238
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 16128863   241 WIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGL 277
Cdd:pfam04976 239 LLIPLYVTRVPNVPLLVLSVLLILAGEMIGRVLFYGL 275
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
7-285 1.88e-70

DMSO reductase anchor subunit DmsC [Energy production and conversion];


Pssm-ID: 442531  Cd Length: 282  Bit Score: 218.99  E-value: 1.88e-70
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863   7 EWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSN 86
Cdd:COG3302   4 EWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKRLLRALLLALVLLGVGLLASTFHLGHPLRAWRAFSNLRTSWLSR 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863  87 EIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYnSIDTVPTWYSIWTPMGFFLTMFMGGPLL 166
Cdd:COG3302  84 EIVAAVLFFALAGLYALLAWLGKLPGGLRKLLGLLAALLGLALVFAMAMIY-QIKTVPTWNTPLTPLNFLLTALALGALL 162
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863 167 GYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDY-GALMSWRIVLLAVALCLWIAPQ 245
Cdd:COG3302 163 AALLLALAGVDLRALKALALLALLALVLALAVLVAYLARLASIGSATQTAAALLTREfGHLLALRLVLLALGFVLPLLPL 242
                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 16128863 246 LKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAV 285
Cdd:COG3302 243 LRGSTAALALLALAFALVLAGELVGRWLFYALAVHVGMLY 282
 
Name Accession Description Interval E-value
DmsC pfam04976
DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of ...
1-277 4.88e-118

DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).


Pssm-ID: 398575  Cd Length: 275  Bit Score: 339.80  E-value: 4.88e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863     1 MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEaQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVG 80
Cdd:pfam04976   1 MNTGLHELPLVIFTVLAQSVVGAFIVFAFVLLFGKNQAL-RQYVHKSMFVLLALLGIGFIASIMHLGSPLRAFNSLNRVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863    81 ASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNsIDTVPTWYSIWTPMGFFLTMF 160
Cdd:pfam04976  80 ASMLSNEIAAGAIFFALAGLYWLVAILGKLPPALGHLWLIVTMALGIIFMYMMNMVYH-IDTVPTWNTGITTWGFYLTVL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863   161 MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCL 240
Cdd:pfam04976 159 LGGPTLGYALLYFARVDTGTFLFLPFLFVLALTLNAIVIIYQGFSLATIHSSVQQAAALVPDYATLIVLRYVLLFVALLL 238
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 16128863   241 WIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGL 277
Cdd:pfam04976 239 LLIPLYVTRVPNVPLLVLSVLLILAGEMIGRVLFYGL 275
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
7-285 1.88e-70

DMSO reductase anchor subunit DmsC [Energy production and conversion];


Pssm-ID: 442531  Cd Length: 282  Bit Score: 218.99  E-value: 1.88e-70
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863   7 EWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSN 86
Cdd:COG3302   4 EWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKRLLRALLLALVLLGVGLLASTFHLGHPLRAWRAFSNLRTSWLSR 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863  87 EIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYnSIDTVPTWYSIWTPMGFFLTMFMGGPLL 166
Cdd:COG3302  84 EIVAAVLFFALAGLYALLAWLGKLPGGLRKLLGLLAALLGLALVFAMAMIY-QIKTVPTWNTPLTPLNFLLTALALGALL 162
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128863 167 GYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDY-GALMSWRIVLLAVALCLWIAPQ 245
Cdd:COG3302 163 AALLLALAGVDLRALKALALLALLALVLALAVLVAYLARLASIGSATQTAAALLTREfGHLLALRLVLLALGFVLPLLPL 242
                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 16128863 246 LKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAV 285
Cdd:COG3302 243 LRGSTAALALLALAFALVLAGELVGRWLFYALAVHVGMLY 282
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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